Array 1 27-654 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXQ01000205.1 Pseudomonas aeruginosa strain HUM-250 NODE_113_length_9541_cov_15.9128_ID_225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27 28 100.0 32 ............................ TGGCCGAAGAGCTGCACGAGCAGTTCCCACGC 87 28 100.0 32 ............................ AAACAAAACGGCGACCGCTTAGGGTCGCCATC 147 28 100.0 32 ............................ TAGTTCTCCGCCGTCCGGCTGTTTGAGTGGCT 207 28 100.0 32 ............................ TGACCAATTACGAGACCGTCCGCGACGGCAAG 267 28 100.0 32 ............................ TTTTCCTGGCCGCCGCCACCTGCCGCCGAAAC 327 28 100.0 32 ............................ GGCAGATGAGCAGGAGGGTGACGAAGATAACG 387 28 100.0 32 ............................ AGATTGACAGGCGCCGATTGTAGCCGATAGCC 447 28 100.0 32 ............................ GTGGAGCGGTTGAACGCAGCCAACCGCGCCTT 507 28 100.0 32 ............................ TCAACTAAATGGGTCGTACGTGGATTGGTGCG 567 28 100.0 32 ............................ ACGCGATTGAACATTTCTGCCCAACGGGCAAC 627 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGATGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9450-9182 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXQ01000205.1 Pseudomonas aeruginosa strain HUM-250 NODE_113_length_9541_cov_15.9128_ID_225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9449 28 100.0 32 ............................ TGTTGTCGGATGATCTCGGCCAGCCACTCCGC 9389 28 100.0 32 ............................ ATCTACTGCCGGCAGGAACTCAGCCGGTTCTA 9329 28 100.0 32 ............................ CTGAGGCACTACCCGAAATGGTTCCGCAACAG 9269 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCCTAGGGCGA 9209 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 93.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TATCAACCCCAGGGCCTACTAACTAGGCAGCGGTACTAAAACTGGGGGCAGGTCAAGAAAGCCCCAGCCATGCCGCACTCAACGGCGTTGT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCTCGAAGGTCTTCCGCCG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 58478-58210 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXQ01000187.1 Pseudomonas aeruginosa strain HUM-250 NODE_37_length_58503_cov_14.3178_ID_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58477 28 100.0 32 ............................ TTATCCATCGCTGCGCGCCCACACGCCCAGGG 58417 28 100.0 32 ............................ AGGTCTAAAAGTGCTAGCAAATTTTCCCGCGG 58357 28 100.0 32 ............................ TGAAAGACCGCGAAATCAAGTCGCGCTACGAC 58297 28 100.0 32 ............................ AGAGAGTCGAGTTCCAGCACCTGGCCCTTGGA 58237 28 92.9 0 .C.........................G | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CAAATGGTTATAGGTTTTCGGAGCT # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTGTCTCTCCGGCAACTCCGCACACCTGTCAGCCATGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCTCCGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 552-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXQ01000149.1 Pseudomonas aeruginosa strain HUM-250 NODE_58_length_37875_cov_13.5939_ID_115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 551 28 100.0 32 ............................ TTCCCGGTGGCCGTCTCGACGATGTGGAAGAA 491 28 100.0 32 ............................ TATGTAGTCGCGATAAGAGAATCCACATGTCC 431 28 100.0 32 ............................ ATGCGGTCTCGTCTGCTGTGCGATCAGCAGGT 371 28 100.0 32 ............................ AGCACGATCCTGGGCGGTGCGCTGGGCACTCC 311 28 100.0 32 ............................ ATCTTCCCTGGCCAGCCAAACACCGTCACAGC 251 28 100.0 32 ............................ TTTCTCCCGGCCATAGGGCCGAATGAAATTGA 191 28 100.0 32 ............................ GCCGACATGTTCCGCTCCGGCCTCTTCCCCCC 131 28 100.0 32 ............................ TCATGGCGATCGCCAAGGCCTACGGGTCTTCG 71 28 71.4 0 .................T.C..GCCCCC | G [47] ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGTCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCTCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTA # Right flank : CCGATTTCAGTACCACGTCAAACTTAGTAGAGTCCGTTTTCCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19308-18800 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXQ01000082.1 Pseudomonas aeruginosa strain HUM-250 NODE_83_length_19630_cov_20.2286_ID_165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19307 28 100.0 32 ............................ GGTCACGACGTCGCGATTCGTCCCGCCGCCAT 19247 28 100.0 32 ............................ TACGATCTTGTTTGCCGTCCAGGGTGCAACCC 19187 28 100.0 32 ............................ AGAACCGAATAGCCATGAGGCTGGCCAGAGGA 19127 28 100.0 32 ............................ TTGTGGAACTGTGGTATCGCCGCTGGGTGCAG 19067 28 100.0 32 ............................ AAGCAAGGACGTGCAGCATCTCATCGACGCTG 19007 28 100.0 32 ............................ AATCTCACACCGAACCCGTCGGCAACTACGTT 18947 28 100.0 32 ............................ AGCCGCGGCTGGTGGGACGGGTCCAGGTCCAG 18887 28 100.0 32 ............................ ATTCCAGGCGGACCCAGACTTCATCCGGTTGC 18827 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGCGAAGCTCACCGCCCGTTCCGCCCATCACGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGGCGGCTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCT # Right flank : TCGCAAGCGATATCGACCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATATCCCGGATACGCGGCGGATAACCGCAAGCGGTTATCCGCCCTACGGAACCGGGCTTCGGCCTGCGGAGGTCTGGCAGGCACGCAGTCATGCTCACTCGCCAAGTGGTGGGGCGGCGAACCCGCCCCGTCAGGTGGCCGAGCGGAATCGTTGCGCAGGGGGACGAGCGGCAGGAAGCCGCGAGAGCCGCCCCGGTCCACGAAGGACCGTGGCGGCGTGCCACCGGGAGCAACGATGTAGCGAGGGCACCCCAGTCGCGCAGCGGCTGGGGCCGGATGCAGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGGACTCGCCTGGGAAGACGAAACAAGAAGTCGAGGCAGGTACAGCAACCAGCTAGACCACCAAATCTGAAGCCCGCTCAGGCTCTAAGCGACATCCTCCCCCAAGTTGCCAACTGCCGTGTAGGCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4839-4269 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXQ01000241.1 Pseudomonas aeruginosa strain HUM-250 NODE_131_length_4866_cov_16.8453_ID_261, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4838 28 100.0 32 ............................ GGTCATAGGGTAGGGGGAAGCTTTTCTCCCCC 4778 28 100.0 33 ............................ GCGCTCGATGTTCGCCCCGCGAGACCGCTCCCA 4717 28 100.0 32 ............................ ACCGACTACCGGGGCCGGATCATCACCGGAAC 4657 28 100.0 32 ............................ GATCACCGGAGCACCCTCTGGCTGCGCCGGGG 4597 28 100.0 32 ............................ GGGATGCAGCCCAGGCGGTGGAGCAAGCGCGG 4537 28 100.0 32 ............................ TCCCCCTGCTCCGGCTCCAACTCCAGCTCCAC 4477 28 100.0 32 ............................ TCTGGCGAACTGCGCGGCCTGCACCTGCTCGA 4417 28 100.0 32 ............................ TAGAGCCATAGGGGGCCTCGTTATCGGGGTGA 4357 28 100.0 32 ............................ TGAGGCAAAGGCAGCGTGAGGATGATGTGAAG 4297 28 82.1 0 ......................G.CTTC | C [4272] ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTCAAATGGTTATAGGTTTTCGCGGCT # Right flank : CACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGCCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGCGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 977-169 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXQ01000282.1 Pseudomonas aeruginosa strain HUM-250 NODE_169_length_1019_cov_22.0322_ID_337, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 976 28 100.0 32 ............................ GAGACTGGGACGTCGTACTGCTGACCCTGAGC 916 28 100.0 32 ............................ ACCATGGCCAGCACAGGGAACGCCGCGCAGAA 856 28 100.0 32 ............................ TTCACGGCGCCGCAGTCTGGGCATTGAAGGGC 796 28 100.0 32 ............................ AGAAGTTTGGCCCGATGCTCGAGGATTTCATC 736 28 100.0 32 ............................ GACGTAGTACAGGTCCAACAGGCGGCGATACG 676 28 100.0 32 ............................ ATGCGTGCCGCGGCTGAAATCATTGCGCGAGG 616 28 100.0 32 ............................ TGAACGGTTTGAAGTTTCAACGGCATGCCGTC 556 28 100.0 32 ............................ AGATTCGCACTCGGGAGGCGGAGGCTTGCACA 496 28 100.0 32 ............................ AGTAGGTCGCGTTCGGCGGCGAGGCGTTGAGC 436 28 100.0 32 ............................ AAGCTGGCGCCGATGACGGCTACTGCCGCCAC 376 28 100.0 32 ............................ ACCGTCATGCTCTGGCGCATCGATGCCGGCGA 316 28 100.0 32 ............................ TTGTCTTCGGATGCGAAGTGGGCATTCGTCAC 256 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 196 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.5 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCT # Right flank : AGCCGGCTGCGTATCCCAGTGATGATGGGGGTTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATGAAAGTTAAAGAATCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //