Array 1 4562-3064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEUR010000259.1 Streptomyces sp. S12 S9_S1_L001_R1_001_(paired)_contig_197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 4561 33 90.9 28 C.............................A.A CCGACTCCGGGGTCGCTCCCATGTCGCC A [4558] 4499 33 97.0 28 ..............................G.. CCGTCAGCAGCGACCCGACCTTGTCCGC 4438 33 87.9 28 .............................CGAT CGACAGCGGAGACTTCCGCCCAGTCACA 4377 33 93.9 28 .............................T..T CCGCGGCCTCGAACGGCAGATCGCCGAC 4316 33 90.9 28 .............................CT.G ACGACGCGGAGCCGACAAGGTTCGAGAC 4255 33 90.9 28 ..............................ACT CCTCGGTCGAGCCGGCCTTCCAGTTGTG 4194 33 90.9 28 .............................CG.G CCGCGATCTCGGGGTAGTCGCTCATGCC 4133 33 93.9 28 .............................CA.. CCCGCACCGAACTGCTGCGCACCACCGA 4072 33 100.0 28 ................................. CCGAGAAGACGCGGACGGTGCCGCCGTT 4011 33 90.9 28 ..............................TCT GCCAGCGCCTCTCCGGCCTCCGCAAGGA 3950 33 90.9 28 ..............................TCT CCGGGGACATCGTGTACCGGCGCCGCAC 3889 33 93.9 28 ..............................T.A GCGAGCAGGTGGTGCGACATGGGGCGTA 3828 33 97.0 28 .............................C... AGGCAACTGGGGCGACCGAGCTGACGCG 3767 33 90.9 28 .............................GT.A GCGCGCTGTTCGCGGCGGTCGTGTCGGC 3706 33 100.0 28 ................................. GGGCCGGCTCCCGGTCCTTGGTGAGGGT 3645 33 93.9 28 .............................CG.. GCCTGGACCAGGCCGTGGCCGTGGCCGT 3584 32 87.9 28 .................-...........T.AT GCTTAGTCCGAGCGTCAACATTTCGAAC 3524 33 93.9 28 ....................T...........T GCCCCGAGTTCGTGATGGCGACGATCGA 3463 33 93.9 28 .............................GT.. ACCACCACCCGCACGACGCGCCGGGCCG 3402 33 90.9 28 .............................GTT. CAGATCACCCCGGCCACGGCGATCACCG 3341 33 90.9 28 ..............G...............TC. CGGGGCCGATCGCGAAGGCCCTCGGCAT 3280 33 87.9 28 .......................C.....G.CG AGCCGCGCCCCGCCGGGCCGCTGATCCT 3219 33 90.9 28 .............................C.CG CGGGGCTCTACACGGTGATGACCTGGCT 3158 33 90.9 28 ........................G....CA.. TCGCGCCGATCATCCGCGACCTGTCCCC GC [3139] 3095 32 75.8 0 .....T..T.....T..........-...GTCA | ========== ====== ====== ====== ================================= ============================ ================== 25 33 91.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGACGC # Left flank : CGTCCCGCAGCCGGCGGGACGACTTCGGCCGCTTCTTGCGGGCGTAGTAAGCCGACTCGGACCAGCCGGGCACCCGGCATACGGGCCCGACCCCGAAGCCGCTGTCTTTCAGGCTGTCGATCACCTGGTCGGCCTCGTCCGGGGACGGTCGAGCTCCTGGGCAAAAAGCGCACTCGCCGCTTTGAGGATCTCGTTCGCTCGTCTCAACTCCGCTACTTCTTTGCGGAGTTGCTTCAGCTCTTCCCGCTCGACGCTGGTCAGCCGGTCATCGCGTTCACCGCTGTCCGCCTCAGCCTGGCGGACCCAGCCGCGCAGGGCCTCCTTGTGGATGCCCAGATCCTTCGCGACATGTGCGATCGGACGGCCGGTGGTGCGGACCTCGCGCACGGCCCGCTCGCGGAGCTCGTCCGGGTACTTACGTGGTGCTGGCACTGCTCGTGGTTCTCCTTCGGGCCAGGATCATAAGCCTGGCTTCAGGGACTCCACGAAACCGGGGGCAG # Right flank : CGTGGCTGTGTGTGGTGTCTGTTCCGTTGGTGGGGTGGCCCAGTCGAGTCCGAGGGCGGCGAGTGCGGCCAGCTTGTCCGCGGTGAGCTTGGTCCGGCGGCTCTTGTGGTTGGACAGGAACACTCCGAGTTTGACGACGTGTTCCACGCCGTCGACCACCACGGTCTCCTCGTGCCCCCTGGAGGGCGTCAGGGAGCCCGTGCGGGCCTTGTACTGAGCCAGTGCCGCAATGCCCCGTTCAAAGGCCGCTGAACGGCCCCCAGACGGTCGTCTGCCCGGCGCCGCGTCTCTAGTTCCCGCTTGTGCCGGTGCGGTCTGCTCGGCAGGCTTTACACCCAGCCGGGCGAGCCGGTCGCGCTGCCCTTGGCTCAGGAGCGGCCAGTCCTGCCGCTGGGTGGCCAGCCACCGGCCGACGTCCATGCCGTGCACGACCGTCCCCGGCTTCACCGACGCGAGATCGACACCGTCGTCCACCAGGTTCTTCAGCGTGGCGTAGTGGC # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10665-9053 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEUR010000048.1 Streptomyces sp. S12 S9_S1_L001_R1_001_(paired)_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================== ================== 10664 33 93.9 28 .............................G..A TCGACCCGAGCACGGGCGAGATCGGCGA 10603 33 93.9 28 ...............................CC CCATTACCTTCTCAGTCCTTCTGGCCGC 10542 33 90.9 28 ..............................ACA CCTTGCCGATCCCCAGGAAGACGAGGAA 10481 33 90.9 28 ..................T...........C.T CGACCGAGGAGGCCCGCGAGCTCCTGCA 10420 33 87.9 28 .........................G...GTC. ACGCGGACCTGATCGCGCAGGCGCAGGC 10359 33 100.0 28 ................................. CCGTCGTCCTCAAGCACAGCGCGAACTG 10298 33 97.0 28 ...............................A. GTCACGAGCAGCCTGGAAGGCGCCTGGG 10237 32 87.9 28 .....................-...G...G..A GGGGGCCCTACACGTGCGCGCGCGAGAG 10177 33 87.9 28 .............................TCCC TGGCGAGCACGCTGGCCCGGCGTATCCC 10116 33 90.9 29 .....T.........................TT GGGCGCGTGCCGACTGGGGGGGCGTCCGT 10054 33 87.9 28 .........................C....ATC CGGCATGTTCCCCGGGATCAGGGGCGTG 9993 33 90.9 28 .............................GAC. ACTACGGCGTCAGCGACAGCGAGATCGC 9932 33 93.9 28 ...............................CA CGAAGCGGCTGACGACGAAGGGGTACGT 9871 33 93.9 28 .............................AA.. ACTTCGGCATCCGCGGCTTCGTCCGGGC 9810 33 93.9 28 ..............................C.T GCTTCCGGATCCCCTGCTCGGAGCCCGA 9749 33 97.0 28 .............................T... GTGAGCGGAGACACGCAGAGCCCGGGGA 9688 32 84.8 28 ........G..-.................GT.T ACTCGTACCCGACAGCCAGCCTGTAGGG 9628 33 87.9 82 ...........T.................GT.A CGGGGGTGAGAAATGTCGACAGGGCCGGGGTCCTCCCCGCCGGTGTTCCGGAGATCGACAAAGTCCTGGCCCGCGGGGATGT 9513 33 100.0 28 ................................. ACTCGTACGGGGAGAGACCGAGGACGGC 9452 33 93.9 28 .............................AA.. TCGAGCAGCTGGTACTCGGCAAGTACCC T [9443] 9390 33 93.9 28 ................T.............C.. TGTTGCACTGGAGCGAGCAGTCGTCGTA 9329 33 90.9 28 ..............................CCA TGCCCGGCAGGTTGCCGAAGGCCATCGC 9268 33 93.9 25 ...........T..................A.. CCAGAGCGGAAACGACGGCCCTCCG CCG [9237] 9207 33 100.0 24 ................................. GTTCTGGTGGATCTCCAGGTCGCG TCCG [9175] 9146 33 87.9 28 .......T.....................T.CC AGAGGTGCGCGGCGCCGGGCTCGTGCTC 9085 33 90.9 0 .............................TTC. | ========== ====== ====== ====== ================================= ================================================================================== ================== 26 33 92.4 30 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGGG # Left flank : CATTTGGCGCAATTAGGAAGACCTCGTATCGAAGGGAATTAGACTGTGAGAGAACCTTGGGTACGCCGCGGTTACGACCAGATGCGCCTATGGATGCGGATGCCATTCGGCGCCACCAATCGGGCATGGCTGCACGGCGAGCTGGGCGATCGTATTCGTCCGGAATGGAATAACACGGTGCGCCCCGGGCGGTGGGAGATAGCGAAGCCGCACCTGAGGACGCTCACGACGGCTCTCGCCAACCGGTTCGGAGAGGCTCACGTCTACCTTGAGTTCTCTACGACGGAGCGATGCGACCGCAAGTGCCAGACAGCAGCCGGTGACGACTGCACCTGCTCCTGCCGCGGTGAACATCATGGCGGCGGAACCTACTGGATGGAATGGCAACTCGTTGGAGAGGACACTCTCATCGGTCCGGTCGGTCGCGTGGAACGGCACTACATCGTGAGGCGCGACGACATCGGTTTGTAGGCCGGCGTTGCACCGCGACGTTCGCCCTG # Right flank : ACGGGCACCGGCTGGTCATGTGGCGCACGTGCTCCCTGCCGACGGGGGTGTCCGGTCACGCCCCGCCTGACGCCTGTTCCGTCGGTGGGGTGGCCCAGTCGAGTCCGAGGGCGGCGAGTGCGGCCAGCTTGTCCGCGGTGAGCTTGGTCCGGCGGCTCTTGTGGTTGGACAGAAACACCCCCAGTTTCACGACGTGTTCCACGCCGTCGACCACCACGGTCTCCTCATGCCCCCTGGAGGGCGTCAGAGAGCCTGTGCGGGCCTTGTACTGCGCCAGCGCCGCAACACCCCGCTCAAAGGCCACTGAACGACCCCCAGACGGGCGTCTGCCCGCCACCGCGTCTCTAGTTCCCGCCTGTGCCGGTGCGGTCTGCTCGGCAGGCTTTACACCCAGCCGGGCGAGCCGGTCGCGCTGCCCTTGGCTCAGGAGCGGCCAGTCCTGCCGCTGGGTGGCCAGCCACCGGCCGACGTCCATGCCGTGCACGACCGTCCCCGGCTTC # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //