Array 1 5500-2471 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRIF01000033.1 Prevotella copri strain AM22-19 AM22-19.Scaf33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5499 37 100.0 38 ..................................... ACTTTAATCTTTGTAGCTCTAGTATGATAAGTCACACC 5424 37 100.0 37 ..................................... CTGACAGTACAGTTACTGTCTGCGCTGCCTGACCTGT 5350 37 100.0 35 ..................................... ATTTTATAATAAGTTTGTAACTAATATAAGAAACT 5278 37 100.0 37 ..................................... CAACTGAACTGCGCTCATAGCACTGTGCTTTACAGTA 5204 37 100.0 34 ..................................... TAGCTGGTGCACCTGGAGCCTGTTGAGCTGGAGG 5133 37 100.0 37 ..................................... TTTTATAATAAGTTTGGAATTAATAAAACAAACTAGT 5059 37 100.0 37 ..................................... TTTACGCGCATAACACGATGAGCACCAGCAGAATACT 4985 37 100.0 36 ..................................... GAGCATTGCTTTCAACATTAACACGAACTTGAGCGG 4912 37 100.0 35 ..................................... ATCCATATTAACGTAAACTCTTGCGAGTTGTAGTC 4840 37 100.0 38 ..................................... AGCACTACGCTCAGTCTGCTCAATATCAACTTTAGCAC 4765 37 100.0 39 ..................................... AAAACTAACTTGAAGTCTGTAGGAAGGCTGTCAGGATAA 4689 37 100.0 37 ..................................... AGACTTAGTATAAAGCCTTGTCTCGTACTTGCACATA 4615 37 100.0 36 ..................................... TAATAAGTGTTTAAATTAATAAAACTAGCATAAGCT 4542 37 100.0 37 ..................................... TTCTGAACTGTCAAATTAAGATTCATTGATTTCATAA 4468 37 100.0 35 ..................................... TTCTTAATGATGCCAAGCAGAACACGAGTTTACAA 4396 37 100.0 35 ..................................... TTCTTAATGATGCCAAGCAGAACACGAGTGTACAA 4324 37 100.0 34 ..................................... ACAGTATAGTCCTTTGTTTTATCGAACTTCTCAT 4253 37 100.0 37 ..................................... TTTCTCTGCTTTTTTGTTTTTACCTGTATGGTAATTT 4179 37 100.0 37 ..................................... TATGTGTTCCGTCATTGATAGCTTTTTCCTTGCCGTC 4105 37 97.3 37 .....C............................... TTTCTCTGCTTTTTTGTTTTTACCTGTATGGTAATTT 4031 37 100.0 37 ..................................... TATGTGTTCCGTCATTGATAGCTTTTTCCTTGCCGTC 3957 37 100.0 36 ..................................... CAATGTGCACAAGATTGTTCAAATGGGTAATACCAT 3884 37 100.0 35 ..................................... CAGTCATCTGGGTTTTCAAGAGTAAGCTTTACACA 3812 37 100.0 35 ..................................... TTCTTGCACCATCAACTCCATCAATTAACACGTTA 3740 37 100.0 35 ..................................... TTCTTGCACCATCAACACCATCAATTAACACGTTA 3668 37 100.0 37 ..................................... CAGGCAAAGAAGCACATTGTGGCACCACTCTTATGTG 3594 37 100.0 34 ..................................... GAACTACATTGATAGTTGCACCATTTGCTGCACT 3523 37 100.0 35 ..................................... AATTAGCCACTCTAGCAAGACCTCAACCAACACGC 3451 37 100.0 34 ..................................... CTATTCCAAAGAAGAACAGCATTGATACAATACA 3380 37 100.0 37 ..................................... TATGGAGCTCGTCGTTGGGTGTGGAGAACGCAACAAA 3306 37 100.0 36 ..................................... AAATTCACCCTTTGAGTTAAAGGTGGCAATGTCGTC 3233 37 100.0 37 ..................................... TTATCTGGGAATGCCACCAACAAGTTGTCGATGGACA 3159 37 100.0 37 ..................................... ATCAACACCATCTATGAGTACATTAGCCATCACAGCC 3085 37 94.6 36 .....A.........................A..... TTGACATCGCCATTTTTACCAACTGAAATTGCTGAC 3012 37 89.2 37 ....TA......TG....................... TCAATGACCATGAATTCATAGTCATTACCGTTGAATG 2938 37 91.9 34 .....A......TG....................... AGCCCTTCGATGGTGATACCTGATGCTGACAGCA 2867 37 83.8 36 .....A......TG....T.....C.......G.... CTATTGTTGCCTTGCTCATGCATGATGAGCATATGG 2794 37 81.1 35 ....AA......TG....T.....C.......G.... CCTATTACGAAACCATTTCCACTTTCTTGACGTTC 2722 37 94.6 35 .....A..................C............ TCATCAGGAGCGTAGCTAATTACTCTTGTACCATT 2650 37 83.8 36 .....A.G....TG..........C.........A.. AGACGCATGTTCTCACTACCATTTGCAGCCTTTACC 2577 37 91.9 35 ....TA............................T.. AACACATCACCCTTCTTCCAAGCGAACTTAGACCA 2505 35 78.4 0 .....C.......G..G.T...--.........T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 42 37 97.3 36 GTACGTGACCATCTTCCACTACAATAAGGATTAAGAC # Left flank : TCTCCATATGTTTATGGTTTTGATTTACGGGTGCAAAGATAAATCGGGATTTTGAATTTGTATTTCACTGGGTCAATTTTCTCGGATTTTGTTGGTTAGAGGTTGATTTTTACACCTTTTATATGGGATATGGATTATTCGTTCATCACTTTTCTTGTTGTCGTTAGAATCTTTAATGGAGGGGAGTAATGGATATGTAGGATTCATGGTTAATGGTAGGAGATAGCCTTCTTTTTCTGAAGTTTGTTAGTGCTGAATGGTGGGGTGGTGGGTGGTCTTGTCGTTTGCCTTTAGGTTTCTGTCTCCCTATTTGGTTAACAGAGTTAAATTTTGGGGATAAAAATGGCTAAATATTTAAGAATAATTGGCTTGCATATCTCGAAAAAAAGTCGTACCTTTGCACTCGCTAAGAAATAGTTAATTTTCGGTTAAGGAAAGTGAATATTTGTTTAGTGAAGTTCTTTAACTTATTGATAATCAGTAAAGTCTTATAAGGTCGA # Right flank : TATTTGTTTGTGAGTTGTTCATAGATTATTTTGTTTCATAGGTAGGGTTAATCGTTGCATGAAAAAATCCCATATCAAGGTTGGTGCCCTTGGTATGGGATTGATATTAATATTCTTAAGCAGGAGCTTCTTTTTTCTTACTTCTGGTAGGAATCATAGAGTTCCTTGGTCTTGTCTTCACCCAGGAAACCGGACAGCTTTTTCCAGATTCCACTCTTGTCAAATGGCTTGGCAAGTTCCTTCACTTCCTTCTTGGATGGATCCTGTAGCAAGCGGGTTGAGGTATTGTAGAGGGCGTTGCTGTCGGATTCGTTGAGCTGTGATGCCTTGAAGTCTTTCAGCCATTTTTCCACCTTCTGGAAGCATACCTTGAAGTCCTTGATACTATAGTTTACGCCATCTCCTGCGAGTTTATCAAGGGTGGTGCCAAGACCAGCAGCATGTTCCTTTTCTTTAGCTTCCTGGGCAGCCTGTGCTGCTTGTTGCTTTTTCTCTTCTTC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGTGACCATCTTCCACTACAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [40-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 12009-10805 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRIF01000033.1 Prevotella copri strain AM22-19 AM22-19.Scaf33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 12008 37 100.0 34 ..................................... AATGGGAGCAAGGCTTATTCAGCCCTGCAATCCC 11937 37 100.0 36 ..................................... GTTCAACTTATTTATTTCACAATTATCCTCTTTGTG 11864 37 100.0 35 ..................................... AGACTGACCTCTTACTTTGAGGAACTCAGCAACTG 11792 37 100.0 36 ..................................... GCAGTAACTGGGTCAGTAGCCATCATCATAAACGCA 11719 37 100.0 37 ..................................... AAGTTTTACACACTTACTCTCAGATACTACGTCACTA 11645 37 100.0 36 ..................................... ATAGCGTTCACAAAGTGAACAAACTGACTCATTGTG 11572 37 100.0 37 ..................................... TCACAAATATTCATTGCTAAATAATTATTCATAATAA 11498 37 100.0 35 ..................................... TTACGGAGTTTAGTTCTACGACACTTATCAGCAGA 11426 37 100.0 37 ..................................... ATTGATGGCATTACATGGATTAAGGCACCATTTGCTG 11352 37 100.0 35 ..................................... ACTTGTAACCGGCTAAGCTAGGTTTAATCAAGTTA 11280 37 100.0 35 ..................................... AACTATAATGTTTGGAGTTGTATTCCCAATATATT 11208 37 100.0 37 ..................................... CTCATGCATGATAAGCATGTGATTGCCATCCTGCATT 11134 37 100.0 37 ..................................... AACAGTCTCAATGAAATTGTTGTTTGAACTCTGTGAA 11060 37 100.0 35 ..................................... CTTTATTGCGTGCTTTAATAGTTTTTTCAAGAACA 10988 37 100.0 37 ..................................... ACTTTCTTGAGTTCAGCACTCACTGTTTCAAAACTTT 10914 37 100.0 36 ..................................... AAATAAACGATACTTTGACATAATTATATATAATTA 10841 37 89.2 0 .......G.........................TTC. | ========== ====== ====== ====== ===================================== ===================================== ================== 17 37 99.4 36 GTACTAGACTATTGTCCATTACAACAAGGATTAAGAC # Left flank : CACTCACTCAATTTTCCCTTTTGCTACTTTCTTTTGCTTTATATTGTTTTGTAATGAATGGATTCAATGATGTCGCTAACAACTTAACCATAGCGGCTTTGGTTTTTCTGGGTGCAAAGGTAGGGGAACATAGTGAAATGATATTTCACTGGCTCATTTTCCTCAATTTTAGTTAGTTGTGGGTGCTTGCTATACCTTATTATATATGTGGTGAGATAGTTTTTGGTAGATAGATTTGTTGATTTATGGTTTTACGGTTGTGTTGTTTATTCTTATGTCGTAGAGTGCTTTTGGGATACCTTTGTGCTTATTGTTAATAGAATAAAATTCTGATGCATAAAATACCAAAAAAATTAAGAATAATTGGCTTGCATATCTCAAAAAAAAGTAGTACCTTTGCACCCACTAAGGAAATAGTTAATTTCCTGTTAATGAAAATAAATATTTGTTTAGCTTAGTTCTTTAACTTATTGATAATCAGTGTTGTCTTATTAGGTCGA # Right flank : TGCCGTATAGTTCCTATGTTTCTTGATGTTGCTGTTTTTTCTACTAAATACATTGATGAATTGATATAACCCATAAATAGAAATGCAGACAGTAACAAAAGATTAACGCTTCAATGTGTTGGAATTTCAAAGGAAGTTGTATCTTTCAGGCGTAAAATGTAAGATAGCGCTAGAGGACAAAGCTACGTTTCTACTTTGTTCACCAACGTTTTCAATGTTAGTTGGATATTTACAATAATTGAGATTGTGTAGCAGTGCCTTGATTAATGGGGGAAGTTTTAGGTATGCTAACTTTTGAGCAGTCTCTCCTTAAGGAATACCTAAATGTGGTATTCCCTAGGAGTAGACCTTATCAGTTCTTAGATAGTTAAGGATAGGACGAAAATGCTTTATTTGACATTTTTTTATTTGAAAAATCATGGAGTCTTTTGCCGATGATGCAGTCTCAGTTTTGTTTTCCTACCTTTAGCGGATGTGATACATTGTGTGGATTTTCTATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAGACTATTGTCCATTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //