Array 1 5108-4420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOH010000021.1 Vibrio cholerae strain C5G.R Scaffold21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5107 28 100.0 32 ............................ AGTAAGGTGGTTATCATGGCAAAGCATCACGT 5047 28 100.0 32 ............................ TGTAAATACAAGCGAATCGCAACCCGTCAATA 4987 28 100.0 32 ............................ AGTACAAAGAGAAAGGCCGTCAGTGGTTCCGA 4927 28 100.0 32 ............................ TGTATAGTAAGTTGTGTAAGCACATTGTTCGT 4867 28 100.0 32 ............................ ATTAGCAGGCGCAATTGTGACTGAACTGATTC 4807 28 100.0 32 ............................ ATACTCAAAAAGTCGGTCTTTCTGCATCAATG 4747 28 100.0 32 ............................ ATCCCGTACGTGGAAGCGCGCAAAGCGGGATG 4687 28 100.0 32 ............................ TTTTGAATGCTCATAACCGAGCACAATTGCAC 4627 28 100.0 32 ............................ GGCAATAAAGACAGCGAGTAGGTTTGAAAAAA 4567 28 100.0 32 ............................ TCTTCTCAATCGTCCACTGACTTATCTCAAAC 4507 28 100.0 32 ............................ TATTCAAAAGCTGACCGTGTATTTCGCTTTTA 4447 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGATATTCAACACGGCAGATTTGGTTTCACAAAAGGCAGCATTATCGCTGTGAGCTTGCTTTCTTTGTCGCGGACTCTTAACCGTGGCCAACTTAACCTTGATCGTTTTGATATTTGACAGGTCACTTCACAGCTTTTGGCGTTGGACGTGTGCATGTTCGATGCATTTGCGTAAAATGCTTTTCAAGTAAAGGTGTTAAAAATCATTGTTAAACAATGGGCTACGAAACTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGATTGAGTTTTGTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAGTTACCCATCATTTTTCGTTGAGTTTTAAGTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAGAGTCTTATA # Right flank : TACTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGTCGCGGTGGTTACGGCTGTTGCGTTTGAGTTTAGTGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGTTTCATGGAGGAAACATGACACATCATGAGTTATTAGATAAAGCACTTTATAGCAGTGCAACAATTCATCAACCTCATTCTTTAAAGGCGTATCTATCAGCTAAAAACCTCTATGATCACCTTGGGCAACCCCCAAATATATGGGCTCAAACAAGCCATTTAATCAACCAAAGTGAACTTAAGGTGTCATGCGTTTACTCCGACACTGTTCAATCCCCTAAGTTTTCAGAACTTCGTATAGAAAGAATATTGCGGCGAGGCATCTATCCAGCAGCCTATCAGGCGATAGTACAATGGCATGAAAACAAGGGGTTTAATGACATATTTTCTCACTATGTATCGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2398-1109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOH010000023.1 Vibrio cholerae strain C5G.R Scaffold23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2397 28 100.0 32 ............................ AAGTCATTACATGTAAGCCTTTTTATACTCGT 2337 28 100.0 32 ............................ ATAAATGACGAGACCATCCTCTTGCTCCTTAA 2277 28 100.0 32 ............................ GCGCACACTCATTTGATGGGTGTTTGGAAAGC 2217 28 100.0 32 ............................ ACAACCAATGCGCGGCGAGTGTCGAGCAAGCA 2157 28 100.0 32 ............................ AGTTTGATGTGCAGTTCGGCGTGGAGACGGAA 2097 28 100.0 32 ............................ ATCAACATAATATTCAGGATTATTTTTATATA 2037 28 100.0 32 ............................ ACCTCGCGGAATGAGTCAGGCCAAACCTACTG 1977 28 100.0 32 ............................ AACAGGTCAAAACAGAACGTCTATCACCGCCA 1917 28 100.0 32 ............................ TGAAGTTGGTTTTGTGATTGAATCTTTAGTGA 1857 28 100.0 32 ............................ TTTTTAACTCCTAGCGGCCTTTGTTCTGATAC 1797 28 100.0 32 ............................ TGAAACACCCAAAAACTATGACTCAGTAAAAT 1737 28 100.0 32 ............................ GGATGATGTATTGATGATGATTGCTATTGCTG 1677 28 100.0 32 ............................ AAAACATGACCGCCAAAAAACGACAGTAGAAG 1617 28 100.0 32 ............................ ACCAAATGAGCAAGCCACATCATAATCAAGCA 1557 28 100.0 32 ............................ GGATGATGTATTGATGATGATTGCTATTGCTG 1497 28 100.0 32 ............................ TGTTTAACCGCGAACCCATCACAGTAACTAGG 1437 28 100.0 32 ............................ AGTTAGGCCGCAAGTGATCAATGGTGCAACCT 1377 28 100.0 33 ............................ GATCTTGTAAAGATGGCGGTAGTAGATAGGTTC 1316 28 100.0 32 ............................ TTCTTGTTGCATTTTTACCGCTTGCATTAGCT 1256 28 100.0 32 ............................ ATCAGCTTATGCTGCTCTGTGATCACTAATTT 1196 28 100.0 32 ............................ TTGCGGCATGGCTTTCGGCTTTGGTTGATCAC 1136 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCGCTGTATGTTTCAGCGTGATTGCCTCATTGAGTTGTAGCACCAACATGTTGTAAGTGGGTTTGTCGGAGAGGGTTTCCACATTGGCTGATTTTTAGGATGAAAGCCTGTATTGGTCAGTTCATAGGTAAAAGTTGAGCCAGTTCTAATTCAATGAAAGTCGAAGTTTGGTCAATGATTTCAGTGGGTTATTCTTGAGTTGGTTCAAATGTAAAGTGTTGAAGCTTAAGCATACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTACTATGCGTTGGTTTTTGTGATTACGGCGTTACGCGGTAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGGGGTTACGGTTGTTGTGTTTGAGTTTAGTTGTTGTGCGTTGTCAGCCCCTTAGGCGGGCGTTATGTACTTCTCTGAAATCCTTCCTGAAAATCAAACTTGTGCACAGTGTTATTATGCGTTACTCTTTGTGTATGGATGCACAATGAGACAGTGCAAGTTGTAATGGCATTAGAATTTAAAGATAAGTGGTTAGAGCAGTTTTATGAGGATGATAAACGACATCGTTTAATTCCAAACAGTATAGAAAATGCTCTATTTCGAAAGCTGGAAATCTTAGATGCAACTCAAGCTGAGTCAGACTTAAGAATTCCACCGGGCAATCGATTTGAACATCTTGAGGGAAATCTTAAAGGTTGGTGTTCAATTCGAGTGAATAAACAATATCGTTTGATTTTTCAGTGGGTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2602-2749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOH010000032.1 Vibrio cholerae strain C5G.R Scaffold32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2602 28 100.0 32 ............................ TAGCCCGTTATACTTTTTTGCAATGCGTTCCC 2662 28 100.0 32 ............................ GTACCCGGCTCTGCCGCTGCTGCTATCACTTC 2722 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGGTAAGTGCGATCATTTTGGGGAAGCATGAGTTATTTGACAACAAAGGTACAGGGAGAACACCTCTGAACGTTTTAATCGAAGTATTAGCGGATAAAAATGTACCTATATTTTATGGTTTTGATAGTTGTCATACGCATCCGATGTTCGTCACACCATTAGGTGTGCGAGGTACAATCGATTTCGACAATCATACCTTTAAGCTAGAAGATCGTTGGGTAAAAGCAAAATAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCTGTGGTTACGGTTGTTGTGATTGAGTTTAGTGGTAGTGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 953-2362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOH010000036.1 Vibrio cholerae strain C5G.R Scaffold36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 953 28 100.0 32 ............................ TCCGACTGGATGATTGAGGCGGTCGGGAATAT 1013 28 100.0 32 ............................ ACCAGAGTGCAGAAGGTTAATGAGGTGGCACA 1073 28 100.0 32 ............................ AAGCAAGACTTCATCAACATGGGCGGCAAAGA 1133 28 100.0 32 ............................ GCGCACACTCATTTGATGGGTGTTTGGAAAGC 1193 28 100.0 32 ............................ ACAACCAATGCGCGGCGAGTGTCGAGCAAGCA 1253 28 100.0 32 ............................ ATCAACATAATATTCAGGATTATTTTTATATA 1313 28 100.0 33 ............................ CAGTAATGGTAAAACCGATTTCAGGTTCAATCT 1374 28 100.0 32 ............................ TGAAGTTGGTTTTGTGATTGAATCTTTAGTGA 1434 28 100.0 32 ............................ TGAAACACCCAAAAACTATGACTCAGTAAAAT 1494 28 100.0 32 ............................ TCACAACCCAAACGCAAGGGATAGATCATGAG 1554 28 100.0 32 ............................ AAATCCAGATAGCCTGCCAAAGTCAATGGAAA 1614 28 100.0 32 ............................ ATGAAGGCCACGACCACGCATAGGTGATAAAC 1674 28 100.0 32 ............................ AATTAGCCGCCTTTGAGCGGCTTTTTTTTGCT 1734 28 100.0 32 ............................ GGATGATGTATTGATGATGATTGCTATTGCTG 1794 28 100.0 32 ............................ AAAACATGACCGCCAAAAAACGACAGTAGAAG 1854 28 100.0 32 ............................ ACCAAATGAGCAAGCCACATCATAATCAAGCA 1914 28 100.0 32 ............................ GGATGATGTATTGATGATGATTGCTATTGCTG 1974 28 100.0 32 ............................ TGTTTAACCGCGAACCCATCACAGTAACTAGG 2034 28 100.0 32 ............................ AGTTAGGCCGCAAGTGATCAATGGTGCAACCT 2094 28 100.0 33 ............................ GATCTTGTAAAGATGGCGGTAGTAGATAGGTTC 2155 28 100.0 32 ............................ TTCTTGTTGCATTTTTACCGCTTGCATTAGCT 2215 28 100.0 32 ............................ ATCAGCTTATGCTGCTCTGTGATCACTAATTT 2275 28 100.0 32 ............................ TTGCGGCATGGCTTTCGGCTTTGGTTGATCAC 2335 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCGCAGGAATGACTTTTGCGTTTGTTCTGAAATCTATGAATGTTGGGCTTGCTTACGCCATTTGGTCGGGCGCAGGCATTGCATTAGTATGTGTAGCGTCTGTCTTGATTTGGCAACAAAAATTCGACATATATGCCTTGGCTGGTGTGATGCTCATTGCATTAGGCACTGGATTAATCACATTAAAATCTAGTGTAGCACTCCAATAAATAGACTTAGCATATGGGCAATGTTACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTACTATGCGTTGGTTTTTGTGATTACGGCGTTACGCGGTAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1593-1085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOH010000045.1 Vibrio cholerae strain C5G.R Scaffold45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1592 28 100.0 32 ............................ CGCCATAGTTCACCGTGATTGTACCAGCCACC 1532 28 100.0 32 ............................ TGAAACCCAATATTCAGCTTGGTTGGCACCAA 1472 28 100.0 32 ............................ GTAAAGCTTATGATCGAGCATAAAAACAAACT 1412 28 100.0 32 ............................ ACACGTGGGCGCTCAAGCTCTTTCAGCTGTTC 1352 28 100.0 32 ............................ GTTCACGCGATCTTTTCATGGGTACGCCAATT 1292 28 100.0 32 ............................ ATGCTTGATAGTCCGACGACAAGCTTACCTGT 1232 28 100.0 32 ............................ AAAATCTGGCGCTCAGGCTGGAATTTCGGAAG 1172 28 100.0 32 ............................ GTGACGGCCTTTTTCACGATGTTCTCCTAGCT 1112 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAAAAA # Left flank : ATGGTTTGGCTAATTATTTCAATGGTTTATTTTTGAGTTGTTTCAAATGTAAAGTGTTGAAGCTTAAGCATAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTGCTTGAGTTTGGTTGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTGCTGCTAAAGTTTCAT # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATACAAAACAATGAGGTACTCTCTGTGAAATATATTTATAGCCTCTTAATTTTGATCATTATGAGTTCAAAATCTTGGGCAGGTTGCGATGAAGTAAGCTCGCAATGCCTAGTGATTGATAGTGATAAAGAAAGTTTTGAGTCGTGTGAAATTGCAATATGCGCAAATATGAGCGAATACCTAGTAAATGTAACATTGGAAAATGGTGGTAGGATTTTTATGCGCGACGATAGCCAGATACAGGTAATTAATGTAAATGGTAGTAAAGGTGTAACCAGTTCACCTCCGACCGACAAGAGTAATCTGACTTGTTATGCAATTGCCGACATGAGCGTAACATACTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94776-95823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOH010000009.1 Vibrio cholerae strain C5G.R Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94776 28 100.0 32 ............................ AGTAAGGTGGTTATCATGGCAAAGCATCACGT 94836 28 100.0 32 ............................ TAGCGTGGCGGGAGAGTTTGGCGGGCGCTTTG 94896 28 100.0 32 ............................ ATTGCTGCGGCCAGCATGTAGACAAAAGCAAG 94956 28 100.0 32 ............................ AAACAACGGAATCCCTAAACTGCATAACGTCT 95016 28 100.0 32 ............................ TTACGACATTTGCACTTTGAGTAGGCCGCGAC 95076 28 100.0 32 ............................ GCCAACCGTTATTGACGCGCTGCCTTCAATGC 95136 28 100.0 32 ............................ GTTGAGGACGCCAACAACTTCAACCTAGTGAT 95196 28 100.0 32 ............................ ATGACCGTATCGCCGCCTATCGTTTTCATTCT 95256 28 100.0 32 ............................ TTTAAATGACGCCGTGTGCGCATGACTCTTTA 95316 28 100.0 32 ............................ ACGAAGCGAAATCGACTTCAAGTCGCCAATAA 95376 28 100.0 32 ............................ TTATGTCCCGATACGTGAGAAACCAAACACTG 95436 28 100.0 32 ............................ GTTCTCGTCTAGCGCCTTATCTTTTGTTGTTG 95496 28 100.0 32 ............................ TCGCTCACAGTTTTAAAACAAAGTTTCGCCGC 95556 28 100.0 32 ............................ AGCCCGCCCCAACACCAAGAACCGTTGGTTTG 95616 28 100.0 32 ............................ ATGACACAAGGCCAGTTCGATGCGTTCACCTC 95676 28 100.0 32 ............................ TTTGGGCGTGACGTTGTATTCCCATGCTTTTA 95736 28 100.0 32 ............................ TTTGCGCTTGAACCATTCCAGCGACTCTTTTG 95796 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAATATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATCTGCTTTCCCCATCACATGGGTTGTCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCCGTACCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAACATCACGCCCGCTTCCATATGGTGGGTGTAAGGAAATTGGTCGAAGAGAGCAAAGCGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTACAGAATGCGCTCATAACCTTGCACCATTTTACAAGTGTCGATATCCATGCCTGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAACGGTAGCTTTGCAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTGCCTTCCATCGCCTGAGTAAACTCTTCTGCCGACATGCGAATGATCTGCACGTTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //