Array 1 1221786-1222851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEI010000001.1 Ralstonia solanacearum strain CCRMRs304 CCRMRs304, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1221786 29 100.0 32 ............................. GAAGTATTCGACGGTGCAGCCTCGGTACTCCT 1221847 29 96.6 32 ............................A AGAGGGGCCTCCACCGGGGTCACTACTACGGC 1221908 29 100.0 32 ............................. TTGCTTTGAATGCCCGAGCCGCACAGTTCGCC 1221969 29 100.0 32 ............................. ATGTGTGGATTTTTTTTCGGTCGAGCTTGGCG 1222030 29 100.0 32 ............................. CGTTGCCGTGCTGACACGGTTCTTGTGCGAAC 1222091 29 100.0 32 ............................. GCATCGGGCCAAGGGTGTCCCATCCGCGAACT 1222152 29 100.0 32 ............................. CTCAACGAAATGGCGAATCTCCGCATCTCGTG 1222213 29 100.0 32 ............................. AGCCCAGCATCGCTGGGCTTTTTCCTTTTGGT 1222274 29 100.0 32 ............................. TCACGTGCAGCCTCCATGTGGATTTCTTCGAT 1222335 29 100.0 32 ............................. ATTTTGAGTGCTGCCTCCACCGAGGCACCTCA 1222396 29 100.0 32 ............................. CGTGGACTTGAATCCCAACTGGCGCAAATGAA 1222457 29 100.0 32 ............................. AACGTGACGTGGCCGCGCGAGTGCGAAAAGTT 1222518 29 100.0 32 ............................. CCGTAGTAGTGATCCCGCCCTCGAAAGAGGGG 1222579 29 100.0 32 ............................. CAATTCTTCTCTTCCATAGGACTCACACATCA 1222640 29 100.0 32 ............................. GGACGCCCCCTGGGCGAACAAGCGGGAAAGCT 1222701 29 100.0 32 ............................. GCGTACCTGTTCAGGGAGCCGACGACTAGCAC 1222762 29 100.0 32 ............................. GCCGTCGTGATCCGCAGGTTCGTATGCCGAAA 1222823 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGCAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : GCAACAGCTAGACGGCGCCAGCGGCACCGTTACGAGTTCCCTGATGGGCGGGGATGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCGCTGCATCAACAACTCACCGTTGATCGTGCCGCGACCCCCGCATGTGCGGAATAAGCCTTCAGTCAGCCCCAGTTCCTCGATCATCTGTAGGAAGATGAAGAAAGCCACCGATTAATGCCTTCAACTATCTCATTTGGGTAGTCTTTATATTTGCTGAAGCTGTCAGGAAAATCTAAAATAAATGTCCACCGGGCTGTTACGATCGCCCGTTGGGGAGCAGACACAGATAGACATTTCCTGACATCAAGAAAAGGCATCCGGCTCACATGGAAAAAGGGGCGGCGCAATACTTTGCCTATTGGGGCAAGGCACGCATGCAGGAAGGTACCAGTCAGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1232442-1234057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEI010000001.1 Ralstonia solanacearum strain CCRMRs304 CCRMRs304, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1232442 29 100.0 32 ............................. CGGGGCAAGAATGGAAGAGCATGGAAACTCGG 1232503 29 100.0 32 ............................. CCCCACTGACAGATGAGCAGAAGGACAAGATT 1232564 29 96.6 32 ............................T GAATCCAGCGTATGCGTTGCGGCAGGGCGGCC 1232625 29 100.0 32 ............................. CCGACAGATCTACTGATTCTTCGATTAGCTTC 1232686 29 96.6 32 ............................T CTTGAGCAGCGCCGATGTGCTACCGGGTGCCG 1232747 29 100.0 32 ............................. GCGCTTGGTGCGAAGTTGCTCCCGGACATGGT 1232808 29 100.0 32 ............................. CAAGCCCGATGTGAGCCATGTGCGCCCTTTAT 1232869 29 100.0 32 ............................. TCCATTCCAACGTGCAACTTGTCGCCGTCGCG 1232930 29 100.0 32 ............................. CGGGCCGAGCTATGCTGCCGGCCCGCTATGAT 1232991 29 100.0 32 ............................. TCGAGATTTGCTCCTGTGTGTTGGATGGTCTG 1233052 29 100.0 32 ............................. CCGATCTCCCGGGCGACAACATCCTGATGCCG 1233113 29 100.0 32 ............................. GCTCAGATCGAGTTCACGCGTTTGGCGCAGAC 1233174 29 100.0 32 ............................. GTGCAGTTCCACGACGCAGTTGCCGATGCCGC 1233235 29 100.0 32 ............................. CCGCCCGCAACTGGCTTGGCTACTAATCGGAG 1233296 29 100.0 32 ............................. GCTACCTGCAGGCCGATGTCCGCGTGCGCTAC 1233357 29 100.0 32 ............................. ATGAGTCAGCAACTCGCCGATTGCTCGCAATT 1233418 29 100.0 32 ............................. TTGAGAGTCACTGAACGTGTACGGCGTGAATG 1233479 29 100.0 32 ............................. CCCTACATGGACCTGCGTGCGCCGATGTTCAG 1233540 29 100.0 32 ............................. CTCGTACACTGGGGATCGAACCCTATCATCGC 1233601 29 100.0 32 ............................. GATTTGCGGCCGGACTGGCGCGAGATTTGGCC 1233662 29 100.0 32 ............................. CCTAGCGTCATGGGCAGCGAGCTATACGGCAA 1233723 29 100.0 32 ............................. CTATTCCAGCTCCGTGAACACGGCCACGCGCA 1233784 29 100.0 32 ............................. CCAGACGACGGAATGATTGCAGCTTGCTTAGC 1233845 29 100.0 32 ............................. CAGTGTTTGGCAATCGAGCGCCTCACGCGCGG 1233906 29 100.0 32 ............................. ATGAGTGGGTTACCCGTCGCGGCGGCTTTTAT 1233967 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 1234028 29 86.2 0 ...........A.A..........CG... | C [1234033] ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.5 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCTATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTATACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCCAGTGGCCATCCAGTCGATGTCACGACCCGGATGCCGCTACACGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGGCGCAGCGCGTCCGGGCCGCTGGCGGCGACGCGACGTCGCCGCAGGGCTGGATCAGTCCGCCAGCGCAGCGCGCGCAGCGCCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //