Array 1 22835-19814 **** Predicted by CRISPRDetect 2.4 *** >NZ_RIZI01000187.1 Acidithiobacillus sulfuriphilus strain CJ-2 Contig187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22834 29 100.0 32 ............................. CGATATGAAGATTATCTACAACGGATGAAAAC 22773 29 100.0 32 ............................. GCCAGGGGCGGCGGAACCTGGACCCATGCCCC 22712 29 100.0 32 ............................. TCTCCCCCCGCTGCAAACTCTGGTTGTGCTCG 22651 29 100.0 33 ............................. CGGAATGAATCCGCCAGAAACCCGCTCGTGGAA 22589 29 100.0 32 ............................. TGAATGGGACAATACTTAGTCAAGATGAAACA 22528 29 100.0 32 ............................. AAATAATCCTTCCAGCGCATTTCTTCGTTTAC 22467 29 100.0 33 ............................. CGGGTCACGATCACGCCCGACATGGTGGGCCAG 22405 29 100.0 32 ............................. CTAGAATGCTCGCGACTGGTGAGTCCATACAG 22344 29 100.0 32 ............................. CCTTACGGCCACGGCGTATCTTACTATATGGA 22283 29 100.0 32 ............................. TGGTGCTGGCATACGGAGAGGTTACCGGGCAC 22222 29 100.0 32 ............................. GGTAGGGGCTCCCAGGATTCCCCCGCCAACCG 22161 29 100.0 32 ............................. CGCCCATACGCACCTGTGACCGCTGCTATGCG 22100 29 100.0 32 ............................. TGCTCAGGGTCGGATGCAGGCGATTGACTCGC 22039 29 100.0 32 ............................. GAGCTCGACATGAACATCCACGGATACGAGTT 21978 29 100.0 32 ............................. GCGGATATTTTCGTCGGCCCGGACCTGGGCCA 21917 29 100.0 32 ............................. TAAGCAAGGAGATTGCCATGGACATCACGCTA 21856 29 100.0 33 ............................. TCTGGCGAAATCCTATCTCGATGTGCTGGAGGC 21794 29 100.0 32 ............................. GTGAATTAGTTAATGTAGAAATTTATCGAGGC 21733 29 100.0 32 ............................. CCATCGCGACAGGCGGTACGATGGCGGAGTCA 21672 29 100.0 32 ............................. CAAACGGTACGTGTAGCCAAAACGACAAATTA 21611 29 100.0 32 ............................. TTATCGAACTTGCTTCGATTAGAGTATCAATA 21550 29 100.0 32 ............................. ATTATACGCGGCACATAAACAATACCCAAAGC 21489 29 100.0 32 ............................. TCAAGGCCCAAAATCCCTACTGCGTTACAACG 21428 29 100.0 32 ............................. CCTCCGGTCTATTGGGCGGACTACACGTCCAG 21367 29 100.0 32 ............................. TGACCATCAGCGTTGCTCTCTACGCGCATCCC 21306 29 100.0 32 ............................. TCGCGTGGACAAAGCTGTGACCAACCCCACCC 21245 29 100.0 32 ............................. GAGATTTGCCATGGACATCACACTGACGACCT 21184 29 100.0 32 ............................. CCACGATAGCCACCGCGGACGTGCCAGGGCAG 21123 29 100.0 32 ............................. CGGTCCCAGTTTTACGTCATTCGCCGGCTGCT 21062 29 100.0 32 ............................. CCCCCAAACCACTAGCCGCGCTTGGCGATACT 21001 29 100.0 32 ............................. CGACAGGTTCGTTGAGCACGGAGGAGGCCATC 20940 29 100.0 32 ............................. AATTGCGCGACATAATACGCGATGCGCTCGTA 20879 29 100.0 32 ............................. GACACGAAAATGGAAATGGAAATGGAAATGGA 20818 29 100.0 32 ............................. GAGGCATTTTGCACTGGTAGCGCGTTACCGCT 20757 29 100.0 32 ............................. AATATTACCGGTTTTTTCGTTGGCTTTTATCA 20696 29 100.0 32 ............................. CAATCAGTGATGGCCCGGATGCGCCTTACCCA 20635 29 100.0 32 ............................. ACGGCCCATTTGTTGACTCCATTGATGGTGCC 20574 29 100.0 32 ............................. TTACCGGTCACAAGCATCGTATCCGTGCATAC 20513 29 100.0 32 ............................. ACGAAACAGAGGCCGTGACGCCCGTCAGTTGA 20452 29 100.0 32 ............................. ACTGGAGGCGGAGGACACGCCCGAAGACGTGA 20391 29 100.0 32 ............................. AGTTCTCCGCTATCGCAAAGCAAATCTCGAAA 20330 29 100.0 32 ............................. CCATAGGCCCTGTTCGCCTGGCGCCGCGTAAG 20269 29 100.0 32 ............................. TCTTGATGTGTACTGATTAATGGATAACGCGC 20208 29 100.0 32 ............................. TCAATTCGGAAAGGCTTTTTTTGTGCTCGATA 20147 29 100.0 32 ............................. GGAAATAATAACGACCTGGAATATCATCCGCA 20086 29 100.0 32 ............................. CAGCTTGTGCTTTTAGTTTTACCGATCCTATA 20025 29 100.0 32 ............................. GCCCAGACCAAAAGAAGAAAAACAAACCAGAA 19964 29 100.0 32 ............................. AAACGGCCTGCTCATACGACAAGACAGGATTG 19903 29 100.0 32 ............................. CTCAAGGCGGACTGCATCGCCGGGAAGTGGGG 19842 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 50 29 100.0 32 GCGTTCCCCACACCCGTGGGGATGAACCG # Left flank : GCGGGTGAGATCGCTCCTCCGACGCCGCCTGAAGAGGCGGTTCCCCCCGCGATCCCAAACCCGAAAAGCCTGGGCGATGCTGGTCATCGTGCTTGAGAATGCCCCTCCCAGGCTGCGCGGCCGGCTTGCCGTATGGTTGCTGGAAATACGGGCCGGAGTCTATGTCGGAAATTATTCCGCCAAAGTGCGCGGTTACATCTGGAGTCAGGTCGAAGCCGGAATAGAGGATGGCAATGCGGTGATGGCGTGGCGAACCAATAACGAGGCGGGTTTCGACTTCGTGACCCTTGGGGCGAATCGCCGTACCCCGGTGGAAATGGATGGGGCCAAACTGGTCTCCTTCTTGCCCGCCGATGAGGGTACCGCTCTTTAATAGCTTGGGAGGAAGTCTCACAACAGGGCAGGCGAAGGGGTCGATTCGCCGCCTGCACCAGGCCGAAAATGTTGGTAGAATTCCGGCCACATGAAAACCTATGGTATTTCAAAGAGAAGGAAGAAGT # Right flank : GCCAGCGTTGGGCCGAAGTCCGCATAGTGGCTGCGTACCAGATCCAGAATCTCCTGGCGCATGGCTTGTGAAAAAGCGTTATTAGGCCGCTGCCCGCGGCGACGGGACACCAGCCCCGACGGCCCTTCCACCTGCCAGCGCTGCACGAGCCGCTTGATCTGGCGGATGCTCACCCCCAGCCGGGATGCCGCCTCCCGCTGCCGGATTTGCCGCTGTACCACCTGCTGGATGACCAGCGCCCGATCCACCTCCCGCCGACTCATCTTCACGAACTCCTCTGCCACCGTGCCCCCGATCCAGAAAAGGGGACATTTTAGAATGGGACAAAGGGGACATTACTGCTTTGGGCTAACACGGCGCGCCTGTGCCTTGACAACAGGTCCCGCCCTCGCTAATCTCTCGCCCCTCAAGTAAAAACCAGAAGCCGGAGTGTCGTGATGAAGACCTATTCCGCCAAGTCCCATGAAGTGCAGGGGGACTGGTACGTGGTGGATGCCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACACCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16685-19372 **** Predicted by CRISPRDetect 2.4 *** >NZ_RIZI01000166.1 Acidithiobacillus sulfuriphilus strain CJ-2 Contig166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 16685 37 100.0 34 ..................................... TGACAATCCCGCTGACTCTGGCGGTCCTACCAAT 16756 37 100.0 34 ..................................... AGTTCTGTGGACCGCACCTTGTCCATGGATGATT 16827 37 100.0 34 ..................................... CCAGCAGCAGGCCCCAATATCTACCACCAGGCAC 16898 37 100.0 35 ..................................... ATTTTTATCCCCATACTCGACACTTTTCTGGATAG 16970 37 100.0 35 ..................................... GTTGTCCCCAAAGTCGGTAGCGCGGGAACATTTAC 17042 37 100.0 35 ..................................... GATAATCTTGATGATCTCCCCCAAGTCTGGAGCCA 17114 37 100.0 36 ..................................... AATTCCAACGCTTCCATCGTCTTGCAAAATCCCACC 17187 37 100.0 38 ..................................... AAGGAGATATCGCCGCCATTGGCCCCATAAATGAACCT 17262 37 100.0 34 ..................................... GCCAAACTGGTTGGTGTTGTACGGGGTGCCGCGC 17333 37 100.0 34 ..................................... GTGGGCCGCTCGGTGTATCAGCGGGCGCTGTATC 17404 37 100.0 34 ..................................... CAGGAGGTGACAAATGAAATGGTTTTTAGCAATC 17475 37 100.0 34 ..................................... TGCATGTAGAGCAGCACTTCCTGCGGCCCCACGA 17546 37 100.0 34 ..................................... GATCCCCATACCACGTCCCGGAAGACGGGCGTTC 17617 37 100.0 35 ..................................... GCTGATAGATGTGCCTGACGAGATACTCACGGGAA 17689 37 100.0 33 ..................................... CAACAAACTGACTGCGGATGGCGACCTGATCGT 17759 37 100.0 34 ..................................... GATGGAGAGGCCCGGTACGTAGTAATCGAGGGTG 17830 37 100.0 34 ..................................... TGGATGAGCAGGCGCTTGCGGAATATCAGCCAAC 17901 37 100.0 34 ..................................... TGTATGTCCGGTAAATATCTGCCCGTCTCCGAGG 17972 37 100.0 35 ..................................... TTGGACAACCCACGGGTAGTAATCCGCTGCGGTCG 18044 37 100.0 36 ..................................... TGGACGCTGAATGACGAGGACGCCGGGCGATCCAGA 18117 37 100.0 35 ..................................... TCCATCTCAGCCAACTGGATAAACTTGGCCTTCGT 18189 37 100.0 35 ..................................... CTCATGCGGCCGCGCCACTATGCGCCGGAGCGGCC 18261 37 100.0 35 ..................................... TCGAATCGTTTTACGCATGGGTATCTCCTGTGCCG 18333 37 100.0 34 ..................................... TGGAGCAGTGCACCGGCATCCCGCTGATTTTCGA 18404 37 97.3 35 ...........T......................... TTGGCTCTCAAGGTCGCTTCCAAGCGCCTGGTCAA 18476 37 100.0 35 ..................................... TGGGGTAAATAATATTACCCCATTAAACGTATCCG 18548 37 100.0 35 ..................................... ACGCCATCACCGAGATCGACAAGGCCATGCTTCAG 18620 37 100.0 35 ..................................... CTGGGCGCTCACCTGGAGGTGTGTGTAACGCTCCG 18692 37 100.0 35 ..................................... TGGCTCATCTGGTACTGCCCCTACTTCGTCTACCG 18764 37 100.0 35 ..................................... GCCGTCAACATCGAGCACAGCCTGCACATTGTCGA 18836 37 100.0 35 ..................................... AACTTGCGCGTCACCGGCACCGGCATCAGCCACCG 18908 37 100.0 34 ..................................... TGAGAGTTCCACCGGAGATGAATACGGCGCATCA 18979 37 100.0 33 ..................................... ACCGACCAAGTGTATGTGCCCGCGGTGGCGCTG 19049 37 100.0 37 ..................................... TCTACGAAGTCGCATCGCCTTCCGCATTGTCGGGAGC 19123 37 100.0 34 ..................................... TGCGCATCGTTGTAGTAGGTCCAGTCGCCGACCA 19194 37 100.0 34 ..................................... GCGGCTGGATGAGGACCGCTGGCAGTGTTAGTTT 19265 37 100.0 34 ..................................... CTTCTACGTCTGGTGGCTCTCCCTCTTGTCCTCC 19336 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 38 37 99.9 35 GTATCGCCCGGCTCATAAACCGGGCGCGGATTGAAAC # Left flank : CTACCCTATCTGGCTCGTTGAGGACCGAATCATGCTTATCATCGTCACGTATGATGTCTCCACCGAAACCGCCGCCGGTCGCAAGCGGCTGCGCCGCGTGGCCAAAGCCTGTGAGCGCGTTGGCCAAAGGGTGCAAAAGTCCGTGTTCGAATGCCAGATCAATGCCATGCAGTATGAAGCTTTCGAGCGCGAATTGCTGGCAGAAATTGATGAAAAGGAGGATAATCTGCGCTTCTATCGCATCTCCGAACCCACCGAACTCCGTATCAAGCAATATGGCACCTTCCGATCCATCGATTTCACGGCCCCCCTCGTGGTTTGACGCGCGAACCCGGTTCTCCGCCCTTATGCCTGCCATTTCGCGCAACGTCCAACATATTGTTTCTATGACATTTTTTAGATATATTCCCTACGGTGAACCAGGGTCTCGAACACTTCCTACCCAGGTTCGCGTAATGAGGAAAAAAATTTCTTTCACAACAGAGAGTTGTATGCACGCG # Right flank : CAATACTCTGTGAATTTTCCCCTCGCTCGCGGGGATAGGGTTTACCGGGAGGTCGGGGACCCCGGAGGTTTGGGTACGCCGTCGGCCACTGTAGCGGCAAGGGTTTGCCCTTGCTCCAGACGATAGATCCAGGCCAGCAGCTCGGCGACGGCGAGGTAGAGTTGCGGGGGAATCTGGGCATCCAGATCTACCTGCATCAGCAAATTCACCAATTCTTTGGATTCGTGGACATAAACCCCCGCCTCTTTCGCCCTGGCGATGATCTGCTCGGCCACGAAACCTTGGCCCTTGGCCACCACCTGGGGTGCCCCTGCCCCTTCGCCATAGCGGAGGGCCACAGCCGCCTTGGGGCGCGGCGTTGGGGCTTCAGTCATGGCCGAAGTCCGGAGAGATGTCGCATTGGGTGACGTGCAACCCCGCTGCTGCCAATGCGGACTCCAGGGCTGAGCGGCCGGCGTTGAGGGCGGCATTCTCCGTGCCCCAGACCTGTACCGCCAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCGCCCGGCTCATAAACCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.70,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //