Array 1 171140-173243 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMY01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171140 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171201 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171262 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171323 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171384 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171445 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171506 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171567 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171628 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171689 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171750 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171811 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171872 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171933 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 171994 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172055 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172116 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172177 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172238 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 172299 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172360 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172421 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172483 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172544 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172605 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172666 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172727 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172789 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172850 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172911 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172972 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173033 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173094 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173155 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173216 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189751-191488 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMY01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189751 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189812 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189873 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189934 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189995 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190056 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190117 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190178 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190239 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190300 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190361 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190422 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190483 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190544 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 190605 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 190666 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 190727 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 190788 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 190849 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 190910 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 190971 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191032 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191093 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191154 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191215 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191276 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191337 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191398 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191459 29 93.1 0 A...........T................ | A [191485] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //