Array 1 44483-45374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACZU010000003.1 Clostridioides difficile strain lsh26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 44483 29 100.0 36 ............................. TATATCCAAGTGCATCCGCTGCGTCTTTAGCTGTTT 44548 29 100.0 37 ............................. GAATCAAAATGCAACAGAATTTTGGCAAGAAGTAATA 44614 29 100.0 38 ............................. ATTAACCGATTCGGCAAAAGTATATCAGATAACACAAA 44681 29 100.0 37 ............................. TTTATATCCGTTTTTATTTCTGTATTACTAAGACACC 44747 29 100.0 36 ............................. AAAGAATTAACAATTATAGTAAGTAAAGGTTATCCA 44812 29 100.0 36 ............................. ATAGGCAAAATGTAGACTTAGCAGTACAAATCCATT 44877 29 100.0 37 ............................. CAAATACACAATTCCAGCTGCAAGACCTGCAACCGCA 44943 29 100.0 37 ............................. TCGTTTGCTAGGAAGTTTATCATATTAAAATTGTGTA 45009 29 100.0 37 ............................. AATTGTAATATCTTTGTATACATCTTCATAGAAAACA 45075 29 100.0 36 ............................. AGCGTTTTGTTTACACTTAATAGAAAAAACAGTTCG 45140 29 100.0 36 ............................. GATATTCCTTCTGTTGATATAGATTTTTCGCCACTT 45205 29 100.0 37 ............................. TTGTAGAAAGGTTTCTTATGGGTTGAAAGAGGCTTTT 45271 29 93.1 46 .......................A....G CATAGTCTATTGAACATTTATTAAGAGATAACTTTCGTTTTATATA 45346 29 79.3 0 ...........G...TA.T.A..T..... | ========== ====== ====== ====== ============================= ============================================== ================== 14 29 98.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : GACAGTCAGTTTTTTGTTTATCTGAATAATATTTTACTTAAATTATTAGAGGTCTTTTTGTATATTTCTTCTAAAACATAAGAATATCTATTCATAGTTAGTTTTAAATCTGTATGACAAAATCTTTCAGAAACTATTTTCATATTAGTTCCTACCAAATGTAACAAACTAGCACCTGTATATCTTAAATTATGTATTTTCATTTGTCATTAGGTATTTTTAATACATTATATAACTATGGTTTTATTATGTGAAATCTAAGTTATAAATACTATTGATGATAGAGTAATTGTATACAAAAATATATAATATATTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAAATATGTTTAAGCATTGAAATGTAAGGTATTGATAGTGATTGATAAACATTATCATTTGCACTACTGTTCGCTCACTGCAAATTTAAGAGAATTGCATATGTGTGAGTATTGGAAATTCTAAGTTTATTTTAGG # Right flank : TATTTCAATATTGGACAACGGAAGTTTTTTCAGTGAGTAAAGATTGAATCACTTTATATTTATCTTAATTATGTAATAATATAATCATTATCTTATTTCTATTTGTAATTTTTTTAAGTATGTATTGTCCAGTTGTAATTTGTTTTTATTATTTTAAACTTTCAATTCCAAAATTATCTAATATAATTGAATTAACTTACTTTCTTTTTTTATTTTACCTCCTTGTTCTCTAATTAATTTATACATTTTATTTATATTTAAGAATACATACTCTAATTTGATTACATAAAATAAAATGTTTTTCTACTATAAATTAAACTCTTTAAAAAATATGACTCAACTACTTTAATTTTTATTCTGATGATACATTAATTCTAGACATAATAAAACTCTCCTAGCTAGATGATTTTACATGTTTTAACTATTTCCTAAAAAAGTATAGTTTGATAAAAAGAGCATTTTTATATAAGTACCATATTTTTATTGTGGAAGATAATTAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 92235-93056 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACZU010000003.1 Clostridioides difficile strain lsh26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 92235 29 100.0 37 ............................. ACGAACATACAACATATAAAATATAGATGTTATCATT 92301 29 100.0 38 ............................. ATAGGCAAAATGTAGACTTAGCAGTACAAATCCATTTC 92368 29 100.0 36 ............................. TGTATAGAATTAAGAATTTTTTAAATACTAATTATA 92433 29 100.0 38 ............................. TTCCAAGTGAGTATGTATGAAGAAATAACTTTTTTAAC 92500 29 100.0 37 ............................. GAAGCTGGCAAAACCGAGGTCGGGAAATCGGCAACAT 92566 29 100.0 37 ............................. ACATATGCTTTTAATTCAACTGTTGAAGATGAAATTA 92632 29 100.0 37 ............................. AAATATATATCAGTTAAGCAGAGAAAATACTGGTCTT 92698 29 100.0 36 ............................. GCAATCATTCCGACTAAGTATAATATTGCAAAGTTA 92763 29 100.0 37 ............................. CTTGTACATGTGTCTCATATTAAATTTAGAGTTTATA 92829 29 100.0 37 ............................. ATTTATTTTTCGCTGAATGTGACTATCAACCATTCTC 92895 29 100.0 37 ............................. GTTGTATTACCTCTGTAATTATTTTTTCCAAAATTAC 92961 29 93.1 37 .C..............T............ TGTCCTAACCTAACAATATATTGGTTACCTCCACCTA 93027 29 86.2 0 ...............A......AT.T... | G [93048] ========== ====== ====== ====== ============================= ====================================== ================== 13 29 98.4 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CTACAATTTATAGAGTGGAGTTCATACAAAAGATAATCCTCCCAACGTATAGAAGGGAGGTGAATATGTATGGATAATTTTTTACAAGGTATATTAGCAAGTTTAGTTGCTAGTTTAATAGTTTACTTAACTAGTAAGTTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAGAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCCTGTTTTTATTATACCACAAATTGGTGCAGATATTCAAAAATAATATTTTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAATAAAATAGGGCTTAAGCATTGAAATATAAGGCGTTGAAGATGTATGATAAGTATTATCATTTGCACCACTGCTCGCTCACTGCAAATTTTAGAGTGTTGCATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : GAAGTTACAATGAGTACAAGAATGTTTCTATTTATTGTAACTTTTTTTATTACAAACTTAAATTTATAGTATATTATAAAAATCATTATAAAAAGATGATTTAATAAAAAAATATAATTAAAAAAATGATTAATAATCTATAAAAATGGAAAAAGCATCCAATATCCTACAAAAATATATTTTTTTATTACAATTACAAGTTTTTATTGCATCTATTTAGCAAAAGTATTATTATGCAAGTAAGATAATTATCAAAGACAATTCTAAATAGTCTGATTTAAAAGTACAATTAAAGGATATAAATAGGAATAATTTATAAATATTACAGAAGATTTATAACTAAAATTACGAATGTAAGTTTGTTATATGGGGTAGTTGTGTGGATGAATCAAATAAATTAATATTAGAATTGAATAATATTTTCTGTGAATTAGAGAGTATTAATAAATATAAGTTTAATGAATATAAAGAAATTGTTAAAAACTTACACAACAAAAAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 74138-73388 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACZU010000002.1 Clostridioides difficile strain lsh26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 74137 29 100.0 37 ............................. TATTAAGGGGTACTTTTAAGCTAGTATTTCTATGCTT 74071 29 100.0 37 ............................. CAAAAAGTCGCCAAAATAGCAGCATTAAATAAATTTC 74005 29 100.0 37 ............................. TACAAAACTTATGCTAACTTTAGAAAATATAACTCAT 73939 29 100.0 36 ............................. GCTTATCAACTATTGTTCCTGTTGGGGCTGCCATAG 73874 29 100.0 36 ............................. CAATCTGATAAATCATTCTTGTATATTGATTTTAAC 73809 29 100.0 36 ............................. CAGCGAAACCGAAAACCTTGTCTTTTAGCCAACCGC 73744 29 100.0 35 ............................. ATATGAGGATTTTCTCTAAATGAATGGTGGTTAAG 73680 29 96.6 37 .............C............... CAGTTGACACAATGAGTAAAAGCGAAGCAGAGCAAGC 73614 29 100.0 38 ............................. AATATTCTTCTTCTATCTGTATCTAATCTTAGACCATC 73547 29 100.0 37 ............................. GTAGATTATAAAATGTTGAAATAATAAGGAGGTGTGG 73481 29 100.0 36 ............................. ATTAGTGTGCTAAAAAACACATTAAATTATGATAGA 73416 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.7 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : ACTATTATTATATAACTAACATCTAAGTGACATTTAAGAAAAATATGAGATTACTGATATTTTACTGATATAAAACTGAATGTTATTTAAAGAGAGCCTTGATTATATTTTTAGAAGCTTTTTATGCATATTATCTAAAATATGAGAATATCTATTCATAGTTATTTTTATATCAGTATGACCTAATTTTTTAGAGAGAATTTTTATATTAAATCCAGTTAGAAGAAGACTTATTAGAATATCCAATGTAGTAAGCACTAGCAGATATTCTTAAATTGATAAATTACTCCATTTTAATTTTATAGGTTAAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGCGTTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAAAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACTCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAGTAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAGAATAAAACTTAATGACAAGATACTAGATATAAAAATAATTACCTTATAAATAGATTGAAATTTGTGAATATTCATACTATAATTTAGATATAAGGAGATGCTCTTATAAACTTAAAGGGTTTGTACTACTTGTACTATCAGTATTGATAATATTAAAGAATATATACCATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATGTAAAACAACACAAATATCAAAATTTAATATTGATAGAGGTATAAACATTATAAAAATAATTGAAAATAAAAAAATATTTAATCCAACTACAATATAAATTAGAACTACACTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 141422-141197 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACZU010000002.1 Clostridioides difficile strain lsh26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 141421 28 100.0 38 ............................ TTTCGAACGCATCAGTGCTGCTGCTTGTATATTAGTCA 141355 28 100.0 38 ............................ TAGTCCTCCAAATTTATTTAAGACATCCACGAATTTGT 141289 28 100.0 37 ............................ GCAACAAGAACAGTTGATTTTACCTTTTCTAGCCAAC 141224 28 82.1 0 ......T.........G....T.CA... | ========== ====== ====== ====== ============================ ====================================== ================== 4 28 95.5 38 GTTTTAGATTAACTATATGGAATGTAAA # Left flank : ATTATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTATTAAGCATAATAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAGTAAATTATTTCCTTACTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGTTCGATTTTTGTAATAAAATATGGCTTAACAATTGGAATACAAGGCATTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGGTGTGTATGTGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAATAGAAAAAAGAAAGCACTTACTTAAATAGTAGGTGCTTTTGTTATTCTTTGCTAGATAAAGTAACAAGTTCATTAGGTGTACATTCAAGAACAAGACAAAGCTTTTCGAATAAATCTAATTTTATAGAACTTGTTTCATTGTTAGCTAATTTCATCATGTTAGGATAAGCTATACCTACTTCTTTAGCTAACCAATATCTAGTTCGACCTTTGGATTCAAGTAATTTATCAATGTTAAAATACATTTTTTCACCTCTTAAGTATATTATACAACAATTATATAATGTTTGCAATATATAATATGCAAATAATATAATTATATAATGTTGACATTATATAATGTGTACGATATAATATACTTAAGGAATAAAAAATAAGAGCCACTCGCCCCTACCAAGTTTGAGTAACTCTTATTGACATATACTACATGTGCATTAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTAAGGAGTGTATTTTTATGAACA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 248336-247718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACZU010000002.1 Clostridioides difficile strain lsh26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 248335 29 100.0 34 ............................. TTTAATCCAGGTACGGCAATACTTAAAAGTGATT 248272 29 100.0 37 ............................. CCTCATATTTTTCTATTTTAATTTTTTCCATAGAATC 248206 29 100.0 37 ............................. CCCAAATTATCTTTCATAGTTGTAGCAACTTCCATTA 248140 29 100.0 37 ............................. AGCGAAAATGCTTATGACTTAAAAATACCTCCACAAG 248074 29 100.0 36 ............................. CTTGTAGAACAAATCTTCGCAGAGAGGACGATTAAG 248009 29 100.0 37 ............................. TTCAAATACGCAGAAGAAGAAATTATAAGTTTAAATG 247943 29 100.0 37 ............................. AAAAATAAAAAAAGAGGATTATTAGATACTAATTCTA 247877 29 100.0 37 ............................. ACTATTTTGTCAATGTAAAATAATTGATATAAACTAT 247811 29 100.0 36 ............................. AGTGATAGATTAATAGATGATATTTGTAGTACATTC 247746 29 82.8 0 ................G...GC.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 98.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : TATCATGTGGTTTATAAGATTGAGTAAATTCTATTGTATTAAATAATTTATTTTAGTTTAGTTTTGAGGGGGATTAATACAATGTGTAAAAGTTTGCTTAATGAATATAATTTAAAAACTGATAAAGAGAGAAAAGATTTTATAAAGTTTGTTATACTATCATATAAGTTGGAACAGAATGATAAAGAGAAGTTTTATGAATATGCAGAGATATTGAGAGAAATGCTTAGAGAGCAAGAAGAGAGAGAAAATAAGTAAATAAATAGATAAAGCACTTGAATATTCTACTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATAAAAATATAGAAATTTTGCAGTGTTCGATTTTTTGAACAAAATAGGGCTTAAGCATTGAAATGTAAGGTATTGAGAGCATATGATAAGTGTTATCAATTGCACTACTGGTCGCTCACTGCAAATTTAATAGAGTTATATATGTGTGAGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAAAATACTAAAAACACTTACTTGAATGGTAGGTGTTTTTTTAATTGAAGTAGGTGATTATAATGTAAAAAGTAACAAATAGGTAAAATATGTAAGAATTATGTGTTATAATAATTTTAGCAAGGAAATTAAAATTGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATTCCAATGTAGGAAGGAGGTGAATTTATATGTTAATTAACTTTTTATTGAGTATAGTAGCTGGTCTTGTATCAGCTTTCATATATGACAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCTATTATTATAGCATAAATTAGAAAAAATATGCAAATAAAGAAAAATGCTTATTAAATTTAATAGGCATTTTTTTATTTTAATACTAAATGAGGAAGTGAATATATGGTAAGAAGACTGCGGTGTAATAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 251054-250763 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACZU010000002.1 Clostridioides difficile strain lsh26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 251053 29 86.2 36 GC.....................T....A GCCATACCTGCGTAATATATCGCATCAGCCACTTCT 250988 29 96.6 36 G............................ ACACGTTGTGTTGATTGTTTTAACTCATCCATATTG 250923 29 96.6 37 ...............T............. AATTAAATAGCTTTTACATTGGCAATACATTCACCCA 250857 29 100.0 38 ............................. CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 250790 28 86.2 0 ....................-..TC...A | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 93.1 37 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : AAGAGGAAATAGAGAAAAAATCCTCAGAGGAGAACAAAGTAAACGTGGAAACGAAAAAACAAACATTAACTGGTAAAGAGCTAAAGAAAAAAGTTGATTCTATAATTTTAGCAGAGTATAAAGGAAATTATTACACAAATGATGTATTAGATACAGATGGTAGCTATGTACTTAGTTTACAAGTTCAAAATGCAAGTTTTGACAATGAAAGCAGTTGTAAGGCATTTACTAAAGACTTAATTAACAAGTTGAAAGAATTTAGAATAGACTCAGCAGAGATATATTTTGTAGGTTCAAGCGGTCAAACAACATATCAAATTAACATAGATGATTTCTTGAAAGTTCAAGATAATATTGATAGTATAGACAATATGGAGTTTTTCTCTTTTAAAGATTTTAAAAATTAGAAACAAAATAGAGACATTTGCTTAAACAACATGTGTCTCTATTCTACCAAATTATGTTATAATAGTACTTAAGAAATATAATTTTATAGCATG # Right flank : CTAAATAAACAAAGGAAGCACTTGCTTTTTGGTAGGTGCTTTTGTTTTGCTCAAAATATTTTAAATTAATAGACTAAGTTCTTATTTTTAGATAGAATTATATTTGAGTAAAGAATTTAATAGGGGAGAGTATATTATGTGGGGAAAATTTAAAAAATTAAGTTTGTTGAAGAAAATTTTAGTAATATTTTTAATATACCTTATTGTATTTACAGTATCAATGATGATTCATCAAGCGATACGAGATTCAAAAAATAGAAATGAAGTAGATGAAGGAAATATTACAAAAGAAAATATAATTAGTGAAAGAGAAAAAGAAGATATTTATAAACAAGAGATGCAAGCAAAAGTAGACTCTATTATACCAGAAGACTTAAAAGATAAAACAACATATTATGTTAACATATTAAACCCAACAAAAGGTGAGGGATATATAGTTAGTATTCAAGTGGAAAATTCTAGGTTTAATGATGAAAATGAGTGTAGAAACTTTACTAAAG # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.77%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 287655-286704 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACZU010000002.1 Clostridioides difficile strain lsh26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 287654 29 100.0 37 ............................. TTTTAAAAAATTTTTATACACCGTTCGCTATTTCTTT 287588 29 100.0 36 ............................. CTGACAAAACTTTATATAAGAGGACTTATTTAATTG 287523 29 100.0 35 ............................. TATAATATCGGTTTTATAGTTGGGTCTATTGCTAG 287459 29 100.0 36 ............................. GTAAGTTCTGTTATTACATGCTGTTGTGCTTGATAT 287394 29 100.0 37 ............................. TATCTTCAAGATGATACATTTTCAGAAGGATGTATTG 287328 29 100.0 37 ............................. TGATTATTATATTATCACAGGAAGGGACAAAATTTTT 287262 29 100.0 36 ............................. CATGATTTAAAACAAATAGAAAAACAGTTAAAAATC 287197 29 100.0 38 ............................. CTATAATACTTTTCTGAAAAACATTCTTTACAAATAGC 287130 29 100.0 36 ............................. TATCAAAGAATATGGATAGTTTTATTTCTTCACTGC 287065 29 100.0 38 ............................. TCTGCTGGAATATTAAAGTTTAGTTTTTGAAGTGTAAA 286998 29 100.0 36 ............................. ATAGGTCCTGCGCTAACTGTTTTAACTCCAAGCATA 286933 29 100.0 37 ............................. TTAAGTAAGTAGAGTATAAACTATACTAAGAGGTCTT 286867 29 100.0 38 ............................. TCTAGTCAAGAGAAAATGTTCAAAATAGCGAAAGTTTT 286800 29 100.0 37 ............................. AGAGAACTTAAAGACAAGCTTCTAAAACAGGCAAAAG 286734 29 86.2 0 A..............A.......T....A | AG [286711] ========== ====== ====== ====== ============================= ====================================== ================== 15 29 99.1 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTGTATGTATGGATAATTTTTTACAAAATGTACTAGAAAGACTATTTGTTAGTTTAATAGTTTGTCTAGTTAGCAATTTACTTAAAAAACGTAAAAAACCACTCAAAGCTGGCACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTTCAAATTACGAACTCCACTCTACTTCCAAATAGATTGTAGTTCTTCTTGCCTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTTAATAAAATAAGGCTTAAGCATTGAAATATAAGGTGTTGAAGATGTATGATAAGTGTTATCATTTGCACTACTGCTCGCTCACTGCAAATTTAAGAGAGTTGCATATGTGTGAGTATTGGAAATGCTCAGTTTATTTTGGG # Right flank : AGTTACAATGAGTAGAAGAAGATTTCTATTTATTGTAACTTTTTTTATTACAAATTTAAAATTATAATATATTATAAAAATTATTATAAAAAGATGATTTAATAAAAAAATATAATTAAAAAGACGATTAATAATCTACAAAAATGGAAAAAATATCCAATATTCTACAAAAATAGATTTTTTTATTACAATTACGAGTTTTTTATTGCATCTATTTACCAAAAGTATTATTATGTAAGTAAGATAATTATCAAAGACAATTCTGAATAGTCGGAAAACATTTCTAGGGATGAAAAGGTATAATTACATAAGTTTTATAAAAAAATATTAGGGATTTTTAACTAAAAATAAGAACATAAGTTCTGATGATAGGGGGGATAATAGTATGGAAGAAGAAATTTGTTATAAACTATTAATTTTTTATGAAGAGCTAGAAAATTTAAAAAAGAAGGATGAAGTGATATATAGCGAATGTAGAGAAGAGCTAGAAATATTACTTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 259918-259689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACZU010000004.1 Clostridioides difficile strain lsh26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 259917 29 100.0 38 ............................. AAATTTGATTTCTACTTAATACATTCTTACTTCCGACT 259850 29 100.0 37 ............................. GAAGTATATAAATATCCAGCCTCTGTAACAAATGCAG 259784 29 100.0 38 ............................. TAGTGTTGGTTCAGGAAAAACTTATACAATGATTACAG 259717 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TGTATCAAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGGTATGAACGTAATTTCACACTTAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGCTAAATAAAAAATTACCAGATGCAGAATTAAAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //