Array 1 92193-87286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNDY010000007.1 Bifidobacterium pseudocatenulatum strain 1001287H_170206_E3 NODE_7_length_106823_cov_87.3487, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 92192 29 100.0 32 ............................. CTCACCGGCAACCCGTACTTTGCCATGGTGCA 92131 29 100.0 32 ............................. ATGAAGGCGGCATACCACAAGCCACATGCACG 92070 29 100.0 32 ............................. AGGCGTGCGATACGATTAACCGATTGTGGCCG 92009 29 96.6 32 ............................G AATGGTTTGCTCAGACGAAAAACCGTTTTTGG 91948 29 100.0 32 ............................. GCGACGGGCACGTTTCACAATACGTTTCACGA 91887 29 100.0 32 ............................. GTTTGAAAGCGTTGGAAGGAAAGATTGATAAT 91826 29 100.0 32 ............................. ATCACACTCAACAACCGCGCCATCGAAGGCAA 91765 29 100.0 32 ............................. AGCGGCTCGCAGCCTTCCCTCCCGGCGCACCG 91704 29 100.0 33 ............................. AGACATTATTAAAACCGCCAACACCCCAAGTCG 91642 29 100.0 32 ............................. TTACACGCGCCTTGTTCCACAGTTCCACATGC 91581 29 100.0 32 ............................. TGGACGGCGAAACCGTCAAGCTGACAACTAAC 91520 29 100.0 31 ............................. CCGCTGCGGGAATGCTCTCAGTCAACGCAAG 91460 29 100.0 32 ............................. GAATACCGAACCGGCACGACTTAAGATTAGCA 91399 29 100.0 32 ............................. GAAGCAGTTACTTCGTACGTCGCGGTGTTCGG 91338 29 96.6 32 ............................T GCTCGTGCCTCAATGGCACGGTCATTACGTAC 91277 29 100.0 32 ............................. CGCCGAAATCCTCAAGGTTACCGCTCAGGCTA 91216 29 100.0 32 ............................. GTTCTGCACGCTCTCCCGTGACGCTGGCGTGC 91155 29 100.0 32 ............................. GTAGTTCGGGGACTATGCGGACAATAAAAGTC 91094 29 100.0 32 ............................. GGAGCCTGATGCGACAACATAGCGCCGATAAG 91033 29 100.0 32 ............................. GCATCATTTGGCATCACGAATTTTCCAACGTT 90972 29 96.6 32 ...................A......... ACGATATCCAGCTCGGCAACGCCTATGTCGAA 90911 29 100.0 32 ............................. ATGTCTTCCGGAATCGGAATAATGCGATACGG 90850 29 96.6 32 ............................G ACTCAATCGACTCACCAGCACAAGAGGCTATG 90789 29 100.0 32 ............................. TCCAGTGCGAATGTGCCAGTCTCATTCCACTT 90728 29 100.0 33 ............................. GCCACCATCGACGCGACCGACAAGGCATCCAAG 90666 29 100.0 32 ............................. ACGGAATACTCGCCGAGCACCACCACGACCAA 90605 29 100.0 32 ............................. AGCCATGAGAACGACTTCACGAACGACAAGAT 90544 29 100.0 35 ............................. AGTTATTATCTTACCACCTTCTCGTCGCAGTTCGC 90480 29 100.0 32 ............................. CCAAACTGGAGAGCGAACGTACGCCCAACATC 90419 29 96.6 32 ............................T CCCGGCGTGTCGCATTTCGCCATCACGCCGGG 90358 29 100.0 32 ............................. TCAAACATGGCGAATACGACGGCAAGCATACG 90297 29 100.0 32 ............................. ACGTTGACACCATCGAGCTGCGTACGTTTGAC 90236 29 100.0 32 ............................. ACGTTGACACCATCGAGCTGCGTACGTTTGAC 90175 29 100.0 32 ............................. ACGTTGACACCATCGAGCTGCGTACGTTTGAC 90114 29 100.0 32 ............................. AGTGAGCTTTTCATATCGGGCTGCGATCTTCC 90053 29 96.6 32 ............................T CCCCCCTTGCGTGCGTATTCCGCGAAGCACTG 89992 29 100.0 32 ............................. TTTGCAGTGACGTTGGCCGCTCCTACACCGGT 89931 29 100.0 32 ............................. AAGCATCCGGACAGGGTGCCGCCCGTGAAGTT 89870 29 100.0 32 ............................. TGGGTGGGGCTTGTCTTCACAACTCGGCCATG 89809 29 100.0 32 ............................. TGGATGCGGCCGACCAGACCCGACAGGATGCG 89748 29 100.0 32 ............................. AGTGTCCTCAGTTTGGGCAGGAGCAGGGGTTC 89687 29 100.0 32 ............................. GTCTTGCGGCATATCGGCTCACGTACCACCCC 89626 29 100.0 32 ............................. GGCGCGTAGGCTCCGGACGCTCCGCCTGTGGC 89565 29 100.0 32 ............................. GTCATCCGTCTGCGCGAGGAATTCCTTGACGT 89504 29 100.0 32 ............................. GAATGTCTGCCGTTGCATTGCTGCCTCCTCTT 89443 29 100.0 32 ............................. GGTACGCCTCATGCATGGCCGACAACGTGATT 89382 29 100.0 32 ............................. CTAACCGCCAAGGCAGTCGCCGACACCATCGC 89321 29 100.0 32 ............................. CACCGTCCGAGCTCCCTTCGCATGTCTCGCAG 89260 29 100.0 32 ............................. GCCGGAAGCAAGGGCGAGGGCATGGTGCAGTA 89199 29 100.0 32 ............................. GTGAAGGGCAAGGCGTCCGAGTTCAAAACCGC 89138 29 100.0 32 ............................. GGCAACGGCATGAACCATGTCGCCATCGTAGT 89077 29 100.0 32 ............................. GTGTCGGCTGAGGTCTTGCCGCTGTAGCCCTT 89016 29 100.0 32 ............................. CAGTGCCGACCGTCGCCCTGTTGGACGAACTC 88955 29 100.0 32 ............................. GTCTGAACGAGTTTTCGGGCGTGTCGCAAGGC 88894 29 100.0 32 ............................. GACGAACACCAAGACACTATCGAATTACGAAC 88833 29 100.0 32 ............................. CTCGGCAACCAGCGGACCATGCAGCTAGCCGA 88772 29 100.0 32 ............................. ACAGCAGGAATGGTTTGACAAACTGGACGGCG 88711 29 96.6 32 ............................T TGTATTGCGGCGGCTTTATCTGTTTGGAATTG 88650 29 96.6 32 ............................T ACCGTGGCGAGACCCTGCACATCAAGCGCCGA 88589 29 100.0 32 ............................. AGCATTATGACACAATCCAAAATCATGCACGC 88528 29 100.0 32 ............................. AAGATGACAACGATACTCATACATTCCATCAT 88467 29 100.0 32 ............................. GCGGACGCGCTCATGCACCGGTTCTATCGTCT 88406 29 100.0 28 ............................. ACAAAAGAACACACACACAACAGAACAG 88349 29 100.0 32 ............................. TGCAGGGCGACGACATGCTCCAGCTCATGGGA 88288 29 96.6 32 ............................T CGAATCGTTGACCGGTCAGGTCGATAACGCCA 88227 29 100.0 32 ............................. GGGGGATGCAGCCGATTCTACGCCGATGCGAG 88166 29 100.0 32 ............................. TCAACAAGGAGAAATCATGAGACATGACGAAC 88105 29 100.0 32 ............................. TGGTCGGTGACGGGGCATTCGACGAGCGGCGT 88044 29 100.0 32 ............................. TCCTTGACGTGGCGCAACGTGGTGGCGCTCGG 87983 29 100.0 32 ............................. CTGTGGATGTCGGCGTTGGAGTCGCCGAGAAT 87922 29 100.0 32 ............................. GGATTCACCCTCAGATGCGACGCGACACTGAA 87861 29 96.6 32 ............................A CTGTGGCACGACGGGCTGAAAGGCAACGTATG 87800 29 100.0 32 ............................. CCTGGAACGTGTCCCACGAGCCCAGCCAGCCG 87739 29 100.0 32 ............................. CCAGTTGGGTGTGGCCCGGACGGGTCAGCATG 87678 29 100.0 32 ............................. GTGGATGTCCGCGGAAACGTCCCTAATTTGGT 87617 29 100.0 32 ............................. CATGGTTCGCCATTCTCGTCGGTCAGTGTGCG 87556 28 96.6 32 ....................-........ AAGGATACGCTGCCCATGATCGTCGGCACGAA 87496 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 87314 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 79 29 99.4 34 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : AATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCTGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGTGTCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGGCATGTGCCATATATAAGCGAGAAACTTCAGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTGTATGTCCATAAATTTCGACGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //