Array 1 96261-96715 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTLH01000018.1 Vibrio cholerae strain M1457 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 96261 28 100.0 32 ............................ GTAATGCCTGCAATTTGCGCGGCCCCTGTGTA 96321 28 100.0 32 ............................ GAATTCAAAAGCCTTTTTTAATTTTTGTTGGT 96381 28 100.0 32 ............................ ACCAGAAAGAAAGGCTAACTTTCCATCTCTCA 96441 28 100.0 32 ............................ TTGTCTGTACTTTGCCCCGTGTCGCTTAGCGA 96501 28 100.0 32 ............................ ATGACGATTGTTCGTGCCATTTCCTCATCAAT 96561 28 100.0 32 ............................ AGAAATGCTCGCGTGGGACTTCATTAGCAAGA 96621 28 100.0 39 ............................ TATAAATAACCCACTTAATTATGCATTATGCGTTATTTA 96688 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 8 28 100.0 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCAGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGAAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCCGCAAAGCACATCACAAGATGGGGACTTCGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAATCAGCATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTGCCCTTTATTTTTGCTCTTTAAAAATGTGTTTTAAAAACAAATAGTTGCAACCGGTTGTTTTTAATAAGGTAAAAAGATGTTTTTTACCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : CCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11339-10292 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTLH01000027.1 Vibrio cholerae strain M1457 contig00027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11338 28 100.0 32 ............................ GTGGTACCGAGTAACTCACAGTCTCGTTTAAC 11278 28 100.0 32 ............................ GGTTCGGCTTGCGCCGCAGGAACGGGGGTATT 11218 28 100.0 32 ............................ TTACATGCTCGCAGCTTCAACTGTGATGCTTT 11158 28 100.0 32 ............................ ATGATGCAACTGCGTATTCCATGTGCTGTTAT 11098 28 100.0 32 ............................ GCTCCACGGGGTCAAGGCCCCTCGATGGTTCC 11038 28 96.4 30 ...................A........ AATTGCCATGCAAGCGCGGGTCTCGGTATG 10980 28 100.0 32 ............................ TCAATGGTTCCTCATAAACGCATTACAGAAAA 10920 28 100.0 32 ............................ ATCAGGCGAAAGCAAATGAATATCCCAGTTAT 10860 28 100.0 32 ............................ TGAAGAAGTCCAGAAATGTAACTATCACCAGC 10800 28 100.0 33 ............................ AAAGAACTCATTAATGCAAGATTCGAGTTGGCG 10739 28 100.0 32 ............................ ATAAGAGCGAAGTGTTGTTTGACTTTTCCGTA 10679 28 96.4 32 ..................G......... TAATGGTTCTATTTTTATCGGGATGTGCAAGC 10619 28 100.0 32 ............................ ATGATAAGTGCTGGGTCACCACGAAGTAGTAA 10559 28 100.0 32 ............................ TTATCGTTGGAATTATTCAGAAGTTGAAACCC 10499 28 100.0 32 ............................ TGCGCATGAGTTTGGTGATGGAACTATGCAAA 10439 28 96.4 32 ...........T................ AAGCCAACGGATTACACGACCGAAGACGTGAC 10379 28 96.4 32 ...........T................ GCTTGGTTTGACCAACTCGGCGGCGCATCGCT 10319 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGAAAAGGCCAAATCAAGACGAACTAGACGAGTAA # Right flank : GAAAGTGAACCAAACGATGCAGTTCACTTTCAACATTTTAATGAGGTTCCTACTTTATATTGTGCATATTCATTATGACCTGCCTAATGGTGCTTTCGATATCAGGAGTCACCTCTTTTCGAGGTGTTGCGAGTTTTTTCAAGAGTTCTGCCTGGCGGTAGTCGGAAACATCACCATAGCTGTAAAAAGTAGTCAGTACGCCTTCATGACCTAAGTTTTGGCTCCAAGCTTTAAACTCTTCCGCGTTGCTACATAATTGCTCCCCTAAACGAGCTAGTGTGTTGCGAAAGCTATGTGGGTTGTAATAAGGCAATCCTGCTAGTTTGAAACTTTGCTTGAAGATTCTTCTGATTGGGTTTGCTGTTGTCCAATGCTCTTTTGTTAATCCCATGGCTTCAAACTGAAAGTTGGGGCTGTTCTTCACTTTCGTTTTTGGGAAAAGGGGAGCTTCTGGGCCGAATGAAAGCTCATTTGTTAGATAACTCACCCATTCGGTAACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //