Array 1 8609-10164 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIQW01000007.1 Campylobacter concisus strain P26UCO-S1 NODE_7_length_122849_cov_128.368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8609 30 100.0 36 .............................. ATCGAGAAGTTAAATAATATAGTTGATAATGCTAAA 8675 30 100.0 36 .............................. AACATTGCTCATTTTCATCGTAATAATCAGCGTGCT 8741 30 100.0 38 .............................. TCTACAATTTGATTTAATTTTTCAACTAACTCGACTTT 8809 30 100.0 35 .............................. ATAGCTCATTTTCAAGCTTTTTAACTTCGTTTCTG 8874 30 100.0 35 .............................. CAAGACAAGTTTAATCAGTTTGAGCAAACACTATT 8939 30 100.0 37 .............................. GTCTTTTTCATAATCGTAAGTTTCTGGCGCGTGCATA 9006 30 100.0 36 .............................. GTGTAACTTTTGCATATTCTGAATTAGAACCTATTG 9072 30 100.0 35 .............................. ACTAACGCAAAAAGCGAATTATTAAACGTTACAAC 9137 30 100.0 37 .............................. CCAAAAAACGGACAGCTATGAATATAAAGACATTGGT 9204 30 96.7 38 .....................A........ CTGATAAAGCTTGCAACTTTGCAATAAGATTTTTTGTT 9272 30 100.0 39 .............................. GCATACCGACCAAGCGGAGATAGTAAAGCAATAACGCCA 9341 30 100.0 34 .............................. GCGCCAGCAAGTTATAAAGATCGGCGCTTTTGTC 9405 30 100.0 36 .............................. GCTTTTTTGCCTAAACTTGGGATGTGATAGCCTTTT 9471 30 100.0 38 .............................. TGTCCATCCATACTGGGCTTGCGTATCTTTGCCATACT 9539 30 100.0 34 .............................. TCATACGCCCACGCATAGCCATCGATAACCATTT 9603 30 100.0 37 .............................. AGTTTCTCGTGTGTGCCTTTGTCGTTGTAGCTAACTT 9670 30 96.7 37 ....G......................... AAATATGGCTCGTCTTCTGCGTATCTTACACCTTCCA 9737 30 96.7 36 ....G......................... TTGTGCCTAATGGCAGCACGTATAAGGCTGATTTAA 9803 30 96.7 38 ....G......................... CTAAATAAGGCAGGTTTTTATTTTTGGGTCGCTGTCGT 9871 30 96.7 34 ....G......................... GCGTCAAATCTATACTAGCTCGCTCCTCTACGCC 9935 30 96.7 36 ....G......................... GTGTGACCGACAAGTGCTGTTTTTTGCATTGTAAGA 10001 30 96.7 36 ....G......................... TATCAAGGAGAGGAAATGAGCGAGATAGTAGCCCTA 10067 30 96.7 38 ....G......................... TGGATAAGCAGTTTGGCATTCCGCCTAACGCTTGGTAT 10135 30 96.7 0 ....G......................... | ========== ====== ====== ====== ============================== ======================================= ================== 24 30 98.8 36 ATTAAAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGATAAGCCTGCACCTCGATCTTGCCGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGTGCCTTATGAGGGCTTTGGGTGGGAGTAAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAATGCTTGAAATTTAGGGCTTGGCGTATTTGCACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : CCCACCAAACATGGTTGGCGATAACCGCAATCACTCTTTTGATAGTCGTTTTTTTGGGGCAGTTTCATACAAATTTTTAGTTGGTAAAGTTAGATGGCAGCTGTTTTAGCACAAATTAGCAAAAAACCTTGGCTAAAGATTATAATGAAGCAAATTATCGTATTAATGAAATTTAAAAAAAGTTGTGAAATTTTTTGTCAACTATAATTAAAACAAAAAATATATGAATTTCTAAAACCTACTTGTAAAAACAAGCAGGTTTTAAAATGTTTTATTTCTCTAGTTTTTCTTTAAGTTTTTCTTTTTTAGATTTAGCTTTTGAAGCAGCTTTTTCTTTCTTTTCTTTTACTTTGTCAACGACTTTGTCTTTTTCATCTTTTGCTTTTTCACTCATACTAGTTTCATCTTCTTTATTAGAAGTTAGCTCTTCTTTAGTTTTAGAAGCTTTCTTTTTAAATTTATCTTTTTTATCAGAGATTTTTTCTTTCATCTCGTCTTTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 17136-17549 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIQW01000003.1 Campylobacter concisus strain P26UCO-S1 NODE_3_length_170003_cov_125.973, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 17136 29 100.0 46 ............................. GTTATTGTGTTTTTTAGTTTTATGATGCCTGCTTTTGTATTTAAAC 17211 29 96.6 48 ........................A.... CAGCTTACGGCATATTGCTTTTCACCGATGACTATTCTGTATTTAAAC 17288 29 100.0 49 ............................. ATGCATATAAAGGTTGTGATAATATCGATACTATCACTCTTATTTAAAC 17366 29 100.0 43 ............................. TTTTCGTAGTTAGTCAAAACTTCTATGTCTGCATAATTTAAAC 17438 29 100.0 52 ............................. CCACTTTTTCCGTATGTGTATCCGATCACTTCAAAAAGCGCGGAATTTAAAC 17519 29 86.2 0 ............C..T.........CG.. | A,A [17542,17544] ========== ====== ====== ====== ============================= ==================================================== ================== 6 29 97.1 48 AAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TGCATACCCAAAGGCTCCTCGCACCTGCGAGCCAATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATACCTCATCTAAACTCCTTATCTTCACATAGTCTAAAACCACGCCCACCATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTAGTAGTTTTATCAGCATGCCAAGACTATCTCTTGTCGCCCTTATATCGCTAGAAAAGGTCAAGATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGTAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATTATTATTTTTTGTATATTTTGTGCGTACCTTCACCACTTTTGATTTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAATTTGTGATTTTAAAGATATTTAAAATAAGTTCTTTTACTTATCATTGTT # Right flank : CCCATACCACATTTAAAAAGGTAAATTCAAAATGTTTACTAAAAATCTAGAACACATATTTACAAAAGCTGCTTTAAGCTCTGCATTTGACGAAATTTCTGCAAATTCTTTAGGTTTAGACGAGATCTCGTATGCTGATTTTAAGAAGAACTTTGACGAAAACGCAGACAATCTCATAAGCTCATTATTAAATGGCACCTACACGCCAGAACCGCTAAGAAAGATCAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGACAAACTAGTTCAAAAAGTCCTATACTCAGAGCTTAGTCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCACACAAATCCACCTACAAAGCCATAAACAGAGCCAGCAGTTTCATAAACGAAAATGACTGCTGGATACTAAAGGCCGATGTAAAAGACTTTTTCGAGTCGGTAAACCACTCCAAGCTACTACAAATTTTGC # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 20535-21467 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIQW01000003.1 Campylobacter concisus strain P26UCO-S1 NODE_3_length_170003_cov_125.973, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 20535 37 100.0 39 ..................................... TGTACTTTATTAAGTACATTAGCTGTAGCTAACTGATTT 20611 37 100.0 39 ..................................... TATATACTTAACCAGCTCTATATCTCCGTATTCTAGACT 20687 37 100.0 37 ..................................... TGTTGTTACCGTTAATATCTCTAACGTATAGTGTTAA 20761 37 100.0 39 ..................................... AGCATTAAACTGGCTAGGGATCTTGATGTAGGCACACTC 20837 37 100.0 34 ..................................... ATGTCATCTCGTTTACCATATCTTTAGTCATAGG 20908 37 100.0 40 ..................................... CCTTGTGGTAAGTAGTTCAAACTCTTTTCAACTTTATCTC 20985 37 100.0 38 ..................................... TCTACAGATGCATCATTAGGATCTGTTTTTAGACTAGC 21060 37 97.3 37 ................................A.... GATTGTACAGCTGACTCTGCATAAGCTTTAGAGAAAT 21134 37 94.6 36 ....TT............................... TCGCTTTTGTCGCTTTCGGCTAAAACTTTTTCAGCA 21207 37 100.0 36 ..................................... AATATCAGATTGAACTTATAGTAGGTGCAATCTGTC 21280 37 94.6 35 ......................TT............. TCGTAATAGTCGTTTGCATCTTCAAACCACCTAAA 21352 37 97.3 41 ................................A.... TAGTTAATTTTTGATATTCTAACTAAGCATGATGACACCGA 21430 37 86.5 0 .........................T.....A..GTT | C [21461] ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 97.7 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : CTTTGAGCTATGTGATAAAAAAGGTATCTTTGAGGCGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTTCAAAATATCACTCATACATTTGCGAACTTTTAGTTATGCTTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAGAATTTGAAATTTTTAAAGGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATTATTGTTAATTTTATGGAGTTAGTATTTTTTCATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTGGATATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCTTTTGTAAAAATAGTCTTTTAGGCT # Right flank : TTACATTTATATGTAAAAACTACTTCATGTAAAATATCACTATCATTTTTTATATTTTTATTTTTATGGGCACATGTTGTCCATATTTCACTTTATAATTGCCACATATTTACAAGAAGAGAAAACAACAAAATATATGGAAAGGAAAAAAATTAATGAAATATAGAGTTGAAAAATATAAACTCATCTGCAAAGGCTGCCAAGAGATATACTACGTTGACTATGAAGGATCAGATGTGTTAGACAAGGACTACTTTGACCAAATAGTAACAGAGTGCTCTAAATGTGGTTCAAGAGTTTTAGAGAAGCATGATTTAGACTTTATTGACATAGCAAAGATGAAATTTAAAAAGATATTAAAACAAAAGAAAAACTACTTTACAAGAGGATAAGATGTTACCAATAATAGCAATTTTTACAAGTAGAGCGATAATAGATATTATACAAATAGGCATGATAACCTACTAGCTAACTGTTTCAACGCTAGAGACTGTCGAAGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 11702-13353 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIQW01000018.1 Campylobacter concisus strain P26UCO-S1 NODE_18_length_37211_cov_54.6607, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 11702 37 100.0 45 ..................................... GATAAGGATCGACGGAAAATGACGCAATTTCTCAGTTGCGCCTTC 11784 37 100.0 38 ..................................... GATACTCCAGCATCAGCATTCATAGCAGTAGTGTTATA 11859 37 100.0 37 ..................................... AGTTGGAGTAGCAGCACCTTGTTGCTGAACCTGTGCT 11933 37 100.0 41 ..................................... TTGCAAGCTTACTTCTCTTTCGAAGACGACACGGTCGCCTT 12011 37 100.0 39 ..................................... AAGTCCTATAAGAGCTTCACCTTTGTTTGAAATTTTTCT 12087 37 100.0 37 ..................................... TATACTAGAAAGTTTACTAAAGTCGTGGTACTCTGGG 12161 37 100.0 37 ..................................... TCTGTCTATATCGATAGACCTATCGACATTTACACTA 12235 37 100.0 43 ..................................... TTTTACCGCTGCCTTTTTTACTTTAACACTACTTCCTGCATTA 12315 37 100.0 42 ..................................... CTTGTATGCCCACCATTCACTTCCATCGTACTCAGACCTTTC 12394 37 100.0 40 ..................................... ATAAACTCATCTTCATCTTTTGGAAAATACTTATCAGCGA 12471 37 100.0 42 ..................................... GAAGCAGCAATAGCCATTGCATGAGCCGGCATCGTAAGCCGC 12550 37 100.0 37 ..................................... AACCAGAGGTCTTCTAGCTGAAAACCTCTAGCTTTGA 12624 37 100.0 45 ..................................... ATCATCATACATAGCTCCTTAATTTGTGGAATACGTCCAAATCTC 12706 37 100.0 38 ..................................... ACCTTGACACCTCTTTCCAATCTTTTTGTCATTCTGCA 12781 37 94.6 44 ..TA................................. AAGCACCCTAGGAGCATCATTTCAAAAATAGCCTGAGCTATTGT 12862 37 94.6 37 .................T..G................ GCAATTTTTCCGAAGAATGTAATGTCTATAAACATTA 12936 37 94.6 35 ..TA................................. GACAATACATCGGCGGTTGACTAGTGACCTACCGC 13008 37 100.0 37 ..................................... ATGTTGTTATTTTGGTGATCCCATGATCGATCACATA 13082 37 94.6 43 ...C..................T.............. GCGCAACATTGCCCATGATAAACACACCAAGCAAATTTAGCAA 13162 37 100.0 41 ..................................... CTACCATCTGCGATCAAAAAGCCAGCAGGGATAGTTTTTTG 13240 37 89.2 40 ..TC....T.............T.............. GCTGTAAGTGGCGTCTGTGCCAGTACCATTTGCATTTGGG 13317 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ============================================= ================== 22 37 98.4 40 ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : AAAGCTGCATGGCTAAAAGCGAGACCTTAGGCGAGGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGCGCCTTTTTTAGGGATTTGATTTTCGAACTTTTCTAAATTTCAAAACGCCCTTTTTACCGCATTTTTATATTTTATTAAGTTTCAAAATCTTCGAAAATCTCAAATTTCCCTATCCCAAAAAAGACTTTCTCGAACTTTTATATTTTTGCACTTTTAAAGTTGCCTTTTTTAGGCACTTAGCATATAGCCCAAATTTGCCAAAATTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCTTTTATAAATGCCCTTATATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCAAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAAGCGTTTTTTGGGCT # Right flank : CTTCTAAGCTATAAAGATAAGGGGGGGGTTAATTCTCCCTATTTATTATTTTAAGGAGAGTAAAATGGATAGAGTAGAGGTAGGCAGTAGTTTTGAGTTCTATGTTGGATTAATTACAGTTCTCTTAGTATTTTTCGTATTTAATCTATTAATAGCTAGAAGAGAAATTAAAATTTATCAAAGTAAGTTTGATTTAATAGGAGTATGTGCTATACTTCCATTAGTAGCAATGGTTTTCTTAATGTTATATCTACATATAACTAAGAATGTAGATGGATTAGTATTAATGGTTTTAATTCTATTCGTACTATATGTAGGATATGGACTTAGAGTAATTTGGAAGAATAATGATGGATTCTTTAATTGTTTAATTGCTTTCATTATTAGGATGAATATCTTATGCTCATTCCCACTACAGCTATTACTATGGGTTATTTTACTTGGAGGTACTTACTATGTAAATGGAGTAAGACTTACTAAGGATAATATCAGAAATTATG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //