Array 1 460994-461322 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBX01000004.1 Cronobacter turicensis strain SH11 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 460994 28 100.0 32 ............................ TGCAACACCAGGAGCAACAACTTGTAGATGGG 461054 28 100.0 32 ............................ AGCCATTCGCACTGTTTTTTCGGCTGCGCGTA 461114 28 100.0 32 ............................ CGTTCAGCCGCTGGATTCCACCCGCCGGAACG 461174 28 100.0 32 ............................ TTAACGCCATCGGATGATGGCCGTCACATTTT 461234 28 100.0 32 ............................ GCGCAGGGCTGAATGGCCGCTATGGATAAAAT 461294 28 85.7 0 ......................C.C.TC | T [461314] ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCAGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCCAACGATAGCACATTTCATTCAGGCGCGACGAGGGGATTTCACCCCTCAGCGGGCTGATAAATTCCCATATCAAGCGGTCTGGTGCGAACGTCAGGTAGCGGAAAGCGGGCAGGAAAAGTACCTTTCAACGATTAAGAAAACACGCGGGCTTACGCACTGAAGAGCAAACAACCGAACGGATGAAACGATAAAAGTCATCGGCGTGGAGTCTTACGTCTGAACCCTTTTTTATGGCCAGCTTCTAACCTATTGATTTTTATGGCGAGTAGCGCAGTGAAGAAAAAGCGTTTTAGCCGGGAAAAGGCAAAATTTGTTTTTAATTCAGGCAATCCGGTAATATTCGCTCTT # Right flank : CTTATTCCTTCACCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGATTTTATTAAGTATACCGCCGCGCTGGGGGCGATAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCACTACTCACGCCGGACGCCCGCAGCAGCATCCAGCTCACGGTTCAGGCGGGTAAAACCGCGTTTGCGGGCAAAAATGTCACGACCTGGGGCTACAACGGTTCGCTTCTGGGCCCGGCGATAAAACTGCGCCAGGGCAAGCCGGTAAATGTCAATATCCGCAATAACCTCGCCGAAGCGACCACGTTGCACTGGCACGGTCTGGAAGTGCCAGGGGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGTCAGACGCGCAGCGTGAGCTTCACGCCTGAGCAGCGCGCCGCAACCTGCT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 207475-207808 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBX01000007.1 Cronobacter turicensis strain SH11 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 207475 29 100.0 32 ............................. GAGCCGATTTGGTGCTTGCCGCGCGCCCTGTT 207536 29 100.0 32 ............................. AGATCTCCGTCAAAATTCCGAATACTGTTGAA 207597 29 100.0 32 ............................. CGGGTGTAGCTGAATTGCAGTCAGCCTGCCTG 207658 29 96.6 32 ............................C GGAGTGGATTTAATGCCACGAAAAATGAGGGC 207719 29 100.0 32 ............................. GTATCTGGCGGCAGCTAAAGGGCGCGACACGA 207780 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGTTAACATCAATATCAACTACCGGCGGCCCGCAGTGCTCGGCGATCTGCTGACCGTCACAAGTCAGGTAAAACAGCTTAACGGTAAAAGCGGGATACTAAGCCAGATCATCACGCTGGAGCCCGAAGGCGAGGTAGTCGCCGATGCGCTCATCACCTTTGTGTGTATCGATCTGAAAACCCAGAAAGCGCTGCCGATCGAAGGCGAACTGCGTGAAAAACTGGAAAAACTCACAGGGTAAATTCTGCAATCGCGGTGACTGTGCCCGCCATCGTGGATTTATCGCCGCTGAAGATAAACAATCCGGTAGATGTTAACGGCCCACAAGCGTTGCTGAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGATGTCGAAAAAATCATAAGCAGTACAAAGGGTTACCGTTAGT # Right flank : GTATTCCTGGCGTGCCTGTTATTTAATAAATAGCAAACGCTCATGCATTGGCAGTAAATGATTAGTTTTAACATGCGTTTACATGAGTTGAATTTATTAAAGGAGAGCATATGTTTCCAACACTCGTGGCGGTGTTAGTCGGCGGCGGCATCGGCAGTGTAATACGCTGGGCTATCTCAAATCGTCTGAACAGTTTATTCCCGTTACTGCCTCCCGGCACGTTAGTCGCTAACGTTCTGGCCGGATTAATTATCGGCTTCGCAACGTTATTTTTTGTTAAATACGTACACGATGACGGCGCCCTGAAACTGATGATCTCCACCGGTCTCTGCGGGGGGTTATCCACGTTTTCGACCTTCTCAGAGGAGGTGTTCTCGCATTTGCAGGCCAGCCATTATCTGGCTGCGGCGACTGAAGTCACTGTCCATGTCGTGTTATCCCTGCTGGCGGTCTACGTTGGTTTTTTCCTTGCCTCATTAATGACCCGATAAAATGAACGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234607-237067 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBX01000007.1 Cronobacter turicensis strain SH11 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 234607 29 93.1 34 .............C..............T GCAAACTCACGCAAACCGAACCGGACGTCTCGGA 234670 29 96.6 33 ............................T TTTTGAGTCGTTTTCCGATAGGCCATCTGTGGC 234732 29 100.0 32 ............................. CCCGCTTCCAGCACCGATTCGCCTTCCAGGCC 234793 29 100.0 32 ............................. AACGTACCGACATTAAAGATGAACACAAAATC 234854 29 100.0 32 ............................. TATTGACGACGGTCGCCACGTCGACTCAAGGA 234915 29 100.0 33 ............................. TCCAGCAGCCGTTTGCCATAGGATTTGGTGAGC 234977 29 100.0 32 ............................. CTAGAACGTTTCCTGTTCGGTACGCCATTCTA 235038 29 100.0 32 ............................. GCGCGGAAATTGATTACCGGGAAATTCTCGAA 235099 29 100.0 32 ............................. CCCCCGATTGCCGGGCGACTCTGCAATGATGA 235160 29 100.0 20 ............................. CGCTTGCTGACCGCTTTACA Deletion [235209] 235209 29 96.6 32 ..A.......................... CAAGAAGGCGCACCTGAGAAATACGAGTTTAC 235270 29 100.0 32 ............................. TATTTAATTTCGGTGTTACCGTTCAAAACTAC 235331 29 100.0 32 ............................. TTCTGTATCTTCATTGTGATTTCATCACTCCA 235392 29 100.0 32 ............................. GTTATCTGCATTTGCACATACATTGCAAATAC 235453 29 96.6 32 ............................T ACCCCGCTTTAGTGATGATGCCGGTTTTCGCC 235514 29 100.0 33 ............................. ATGGCCGACGTAAATAGCAACGTTTTGCGCGGC 235576 29 100.0 32 ............................. ATTCGATCGCCCGCGAAGAAGAATTGCGCACA 235637 29 100.0 32 ............................. TATTCTGGATTGAATATGATCCCCGCCCGACT 235698 29 100.0 32 ............................. GAAATAATCACCGCGCGCGGCAGTGGGTTAGC 235759 29 100.0 32 ............................. CCGAGCCAACCTGAGAGGCGCCGCCCAGAAGC 235820 29 100.0 32 ............................. CAGTGAATTCTCCTGCTCTCCTTCCACCACGA 235881 29 100.0 32 ............................. GACGAGTACACCGTTGAGCCGTTGCAAGGCGT 235942 29 100.0 32 ............................. TTCAAACCTTTTTCTTTTTTCGGTGAACATCC 236003 29 96.6 32 .............C............... CGGCTGAGCCGCGGGCGAGCGAAACTATTGAT 236064 29 96.6 32 .............C............... GTCGCGCAAAGCGCCATGCGACCAAACCCCAG 236125 29 96.6 32 .............C............... GCTGATGTCGTCACCGGGATTTAGATGATGGT 236186 29 96.6 32 .............C............... AGCTGGCACCCTGTGTGGAAGCCCGCGCCGAC 236247 29 96.6 32 .............C............... AACTTCGTCAACAAGCAGTTGGCCTTCATCAT 236308 29 93.1 32 ............TC............... TATCCCCGAGTATGGACGACAGCAGAATGAAA 236369 29 96.6 32 .............C............... CCCAGGGCGGCAGGCGGAACGGCAGAATAACC 236430 29 96.6 32 .............C............... ATCGTGCGCGTGGTCAGGTGCGCCCCGGATAA 236491 29 96.6 32 .............C............... GTTGTCGTCCCACAGTTGCCGGTCAGCCAGCG 236552 29 96.6 32 .............C............... CAGCCTTGTTGATATGCAGGCGAAAAAAAGCC 236613 29 96.6 32 .............C............... AACTTGTAGGTCATGGGGTGTTCTGCCCCCGT 236674 29 96.6 32 .............C............... CCGCGCCTGCAATCGGACTGCTGCAACCCTGC 236735 29 96.6 32 .............C............... TCCGGGATTCGTTTTTCCGAGGCAGACAGATA 236796 29 96.6 32 .............C............... ACTCTGGCTGGTCGGCGGATATCGATTACCTG 236857 29 93.1 32 ............TC............... CCACTGCGTGATCTGCTGCTTCTTTACGCCCA 236918 29 100.0 32 ............................. ACGTTTGCTGCGCTTGGCGTGTTGCGGGAAAT 236979 28 93.1 32 .............C.......-....... CGCTCGGCCTGTCTGATCTGTTTACCGTCAAA 237039 29 89.7 0 ..T.....G...................T | ========== ====== ====== ====== ============================= ================================== ================== 41 29 97.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCGCCGCAGCCTGCGGCAGACATGCTGCCGCCAGCGATTCCACAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTGGTCGTGACGGAAAGCGTCCCGCCCAGGCTTCGCGGGCGACTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGGGACGTGTCGCGCCGGGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACTAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGACGGATTCCGGTGGATTTAGACGGCCTGCGGCTTGTTTCGTTTTTACCGTTGGAAAATCAGTAGGTTAATGGTTCTTTAATAATATGAGATTGTAAACCAAACGTTGGTAGGATGTTGACTGCCAAAAAAGCGTAATGAATACAGTAGGGTAGATTTAGA # Right flank : TCATCCGTTGAGGCTTCTTTCTGCACCACCAGCGTGTTCCCTACTGCGGTGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGCTCCTCATGTCCGGCGGATGCGCTTCGCTTACCCACCCTACAGGCGCGCATTCTCATGCACCCGTTTTACAAAACCTTGACTACGCCTGCTCCGATTGCGCAATAAACCGGCATCCGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCAGGCTCCTGTGCCGCGACAACCTTCTTCGATTCGCCTGGTTTTAAGCATCCGCTTCTGCGTTTTCCTGCTACTCCCACAGCTATTTATTTCCACGATCCCGCCAGGATTA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //