Array 1 28679-27755 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKS01000011.1 Enterococcus haemoperoxidus strain DSM 15920 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ====================================== ================== 28678 34 100.0 34 .................................. CTTACCCTAAAAGTAGAGGCTTCAGTAAACCACG 28610 34 100.0 34 .................................. AAGAAATTGATCGGCATTTAGACGGAATTTTGAT 28542 34 100.0 33 .................................. AAGGATATTCGGATGAGGATTATTATCGTGCTG 28475 34 100.0 38 .................................. CCAAACTTGGCTTTTAAAAAAGGACCAGTAGTTGTGTC 28403 34 100.0 35 .................................. CTAGATACTTTAAAATAATTAAACTGGCACTTATT 28334 34 100.0 33 .................................. CCTGAAAAACGCCGATTATTGTATCTTTAAAAT 28267 34 100.0 35 .................................. GATGGATACAGCAGTTTTGAGTTATCTGTGACCAA 28198 34 100.0 35 .................................. CTTGATGCGACTCAATATTTTACGTACACGGTGCA 28129 34 100.0 34 .................................. TAAATTTAATTTTTCCATCCCTACTCATTCCTTT 28061 34 100.0 33 .................................. TTTTTGCTTTTACGCTTATCTCTTATCGTTAAC 27994 34 100.0 35 .................................. GCCACAGGCGAGACGGTGCAAGGATACGCGTTTTT 27925 34 100.0 34 .................................. CAGTACGTTGATATGGATCTCTCATGATACATTG 27857 34 97.1 35 .....G............................ CAAATGCCAAGCGACTTGGAATTCGTAAGTTTTAG 27788 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ====================================== ================== 14 34 99.8 35 GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Left flank : GGAGATGGCGGTGCAGATATTTTACCATTGTTCCGTTTAAATAAGCGTCAGGGAAAAGCATTGTTGAAAGAACTAGGCGCGCCTGCTGAATTGTATACTAAGATTCCAACAGCTGATTTAGAAGACGATAAACCATTAGTTGCAGATGAAGTAGCACTTGGTGTAACGTATGATGATATCGATGATTATGTTGAAGGCAGAGCAGTATCGGATAAAGCAAGAGAAACGATTGAAGGATGGTATAAAAAAACGCAACACAAACGTCATATGCCGATTTCAATTTTTGATGATTTTTGGAAATAAGCTTCAGAAAGTTGGCGGGATAATATTTGGTGCGAACCTCAAGTGCCCATGAAATCACTAGGGGATCCGCACCAAAATTGAAGATGAAAATGCCTTGATCTAGCTGTTTTTCTCATTTTATTTTAATAATTACTTAGATTTATAAAGGAAATTCGTTATTATAAGTGGTTTTAGTTAGATTAACTGCCTTTTTCACA # Right flank : ATTTGAAGCTGATGGTGGTTTTCTTTTTGCTTCACTCTGTTATAAAAGCCAACTCCAGAAAAATCAAGTAAAAAGAAAGACTAAAAATATTAGCCTTTCTTTTTTTACACCTAACATTACGCTAAAATACCTTCATTTTGTTCAAATGGTTAAAAAAAGTGTAAAATTAAACTAGTTATCTGAAATACTGGGTAAACTACTCTACAATTGGTTTAACAATAGTAATAAGAAGGTGAATGAAAATATGAAAAAATTGTTTAGGAAAAAAAGAGATATCGATAACGAGGCGTTTCTTTCATCTGAAGAAACGATAAAACCTATCAATCATAGTGATATTCGGATTCCCACTGATATTAAAGGGCTATCTGATCAAGAAGTACAACAGCTTATTGCAGAAGGTAAAACCAACAAAGAAGTTGAGGATTTATCTAGAACAACGAAGCAGATCATTTTAGATAACGCATTGACATTATTCAATTTTATTAACTTGTTTTTAGCAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: R [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3879-3571 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKS01000001.1 Enterococcus haemoperoxidus strain DSM 15920 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 3878 34 94.1 33 ................................TC CCCATTTCATAAAATAATATCTGTAACAAATTG 3811 34 100.0 35 .................................. CCTGAATTAACTATTGTTTTGGACCAAATAGTGCG 3742 34 100.0 34 .................................. AGGTAGCGCTGATAAAGTGAAAAAGTACGCTGAG 3674 34 100.0 34 .................................. AAACTGATCCTCCTGGAGAATTTACGTGAACTGG 3606 34 73.5 0 .................TG.A.C....AC..CGT | TA [3581] ========== ====== ====== ====== ================================== =================================== ================== 5 34 93.5 34 TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA # Left flank : AGATGGTTATCCACCGTTTTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATTACTTATGATGTCGCAACAAGTTCGAAGAATGGAACTCGTCGTTTGAGGAAGGTAGCAAAAAAATGTCAAGATTATGGACAACGTGTTCAGAATTCTGTTTTTGAATGTGTTGTTGATGCAACGGAGTTAACGAAGCTGAAGAAAGAACTGGTTGATTTAATTGATGAAGAATTAGATAGTTTACGTATTTACCGATTAGGGAATAATTACCAAAATAAAGTTGAGCATGTAGGGGTAAAGGAGAGTTTTGATGTAGAAGCGCCACTGATATTTTAATAAGAAAATTAAGTGCGAACCCTAAGTGCACATGAAATCGCTAAGGGATCCGCACCAAAATTTAGCCATTTTTATCAATAAAAAGCTGTTTTTCTCATGGGAATTTAATTTTATAAGTGTTTTTTATGAAAACGCGAAAATATATCGTGTATTTTTGCCGTTTTCACTG # Right flank : TTATAGTTATCTTAGGATAGCTCATCAAGTACTAAAAATCAGTTGATTACATCAAAATAAAATAACTAAAAGAAGAAAGCCAAGCATTTTAGCCTGGTTTTCTTCTTTTTTATCCATTAAAAACCTCTAAACATCCAATATTTAACTATCACAAAGTCAACAAAAAATGGAACTAGAAGTTATATTTATAAAAGGTATAATAGAGTGACATGCTGTCATTCGTTTTCCTACTACTATTTGGTCACTCTATTCACTTAACTGAAACATACATAAGCATTAAAAAAAGACCTAGAAAGTAAAAGTCCCCAATGATGCCTATGGATAATTCAAATAATACAGAAAATTGCGTAGCAAAATGAATCTGAAAAGATTATTTTTTTGCAGAAAAAATTGTTTTATATATGTTATTTTAAATAATTTATTCTTGTTATATTAACAAACAAGAAAACTGAAAGAATAATGTTATTTTCAGGTCTCTCAGCTGATAATATAATGTTTTG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: R [matched TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 251163-251873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKS01000003.1 Enterococcus haemoperoxidus strain DSM 15920 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 251163 33 100.0 37 ................................. TTTTTATATCTAAGGACTAAGGTAAGACCCATATTTC 251233 33 100.0 35 ................................. CGCTATCGGGACGCCTGATGGTGCAGCGGAGATGG 251301 33 100.0 35 ................................. ACTGCTTTTTTAGATAATGCTCCAGAGTTTACGTT 251369 33 100.0 35 ................................. TAATCTAAAAATTAATTACACTTCGAGGGTTAATC 251437 33 100.0 36 ................................. ACGTTGTCCGTTTCATCTCCGTGAACCATGTATTGA 251506 33 100.0 34 ................................. TTTTATCTTATGAAGTAAATCATTTCTTTGATTT 251573 33 100.0 33 ................................. TGTTAATGCTGATACCAAATTGCTATTATCAAT 251639 33 100.0 33 ................................. TTTTAAAAGCTTGCCTATATATAAATAATTATA 251705 33 100.0 34 ................................. ATCAAGTGATAAACGACTGCTAACATTATCAATT 251772 33 100.0 34 ................................. AGGAACGCTGCAACGAAAATCAGCAGCAAACAGT 251839 33 75.8 0 ..........AAAC........ACA.A...... | AC [251865] ========== ====== ====== ====== ================================= ===================================== ================== 11 33 97.8 35 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : ATAAGCAGAAATAATTTTGGTGGTATCAATAATTCAACGGTTGTAATAGGAAATAATAATCGTGTTTCAAATGGAAAAAATGAAGAAATCGATTGGGAGAAATTCTCAGCAGAACTCATGACAACATTGACGAAACTTCCACAAAACAGCGAAGAATTTCGCGCATGTACGCAATTGTTGGTAGAGTCGACGTCAAAAGATGAAGGCAAAGTTTCGGCATTTTTAAAAAAGCATGCACCGCAGTTTACGTCAGATGTATTTAGTAACTTAGCTAGTACGCTGCTTGCTGATACAATCAAGAAACTGATGGTTGTTATGTAGTAGTAGAGATAAATAACGTGAGTGCGAACCCCAAGTGCACATAAAATTACTGGGAGATCCGCACCAGTTTTTGACGGGAAAAGAACCATTTTTAATGATTTTTCTCATCTTTTTCACATTTTATATTTTTTTTTAGGTGAAATTATTGTATTTTTAAAGAGAAATACTGCATTTTCACG # Right flank : TAAACAATTTGTAAAAAGTATAGACGAGATTTTGTATTTACGATAATATAAATATATCTATCATTTGTATGGATAGTTTTTTATCAATGGAGAGGGAATAATAAAAAAAACAGTAAAAACATCTATGGTTTTGTTGGCCTTAGGGTTAGGTTTGTCGATTGGAACAACTGATGAAGTTGAGGCGATATCAGAATCGCCGTACGCTTTTTTCAATGAGTTGAGCATAAGAGAAACAGTTGGAACAGAGTTAAATCAGGTTTACAAAAATAAACATAAGAAAAAAAACAGATAAATTAAATAATGACTTTGAAAATAGTTTGATCAGCAATGAGGAGTATGAGAAACTTTTTGACAAGTTGACAGAGAAATTTGAAGCCAATTTATTAGAAAAACAATCGTTGTTTAATGATTATCAATTATTTAAAAAAGAAGATATAAAAGATATTACTTTTTTTGGTGGTTAGTTTGAACGTAATTCCTCTTTGAGCGGATTCAATCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.80,-3.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34768-35338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKS01000006.1 Enterococcus haemoperoxidus strain DSM 15920 Scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 34768 34 97.1 33 .................................C TAGAGTTTGGGGTTACGGTTGCTATAAACCCTG 34835 34 100.0 32 .................................. CGCATATAAGCTTGACTAAATTTATTCTCTTT 34901 34 97.1 34 .................................T CCCCAAAACTGTTTTGAGCTACTCGCCACTTTTC 34969 34 97.1 33 .................................C AAGCATGATCGTCTTTATATGATCCCTGTAAAA 35036 34 100.0 33 .................................. AACAGATCAAGGATCTACACCCGATTACACAGG 35103 34 100.0 34 .................................. ACCCAAAACTGTTTTGAGCTACTCGCCACTTTTC 35171 34 97.1 33 .................................C AAGCATGATCGTCTTTATATGATCCCTGTAAAA 35238 34 100.0 33 .................................. AACAGATCAAGGATCTACACCCGATTACACAGG 35305 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================== ================== 9 34 98.7 33 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Left flank : AGCGTTTTGATTTTCTACAAAAGACATCGGTTAGAGAAGAGCAACAGTTATCATTTGATTTTGAAGAACCGCTTTTAGTTGCTGAAGAAAAAACAGCAATTTTTGAAGATTATTCTCAAGTTGTTTGGCAAAAGCGATCTCTAGGAGAGGTTATTCATATTTTTAGTCATTTAAAATGGCATATTTTAGTTTTCTATGGACGCCAAACTGGGAAGCTAGATACAGGTGAAAATCAAATTTGGTCAAAAAAAGAAGACTTTCAAAATTATGTTTTTCCGAAGCCTCAGCAAAAAATGGTAGAACTTTATAAACAAGAATTTAAAATAGAAGAATAAATTGAGGTGCGAACCCTAAGTGCCCATAAAACCCCTAGGAGGTCCGCACCAAAATTTTGCTGATTTTAGTTGGAAAAACAGGGTTTTTCTCATTTTAATTTAATGTTATACTGTGATTAATAGTTGAATAGTGGAAATATGGTAGGTATTTGCAGTATTTTCACA # Right flank : AATATAGGTGAACCTGTTGTCGGAACACAAGAAATGTCTAGCTCTGTATAGACCCCACTCCTCTTCAAAATCATAACCAATTAACCTTCAAAAAAACTAAAATCAAACCATTTATTTTAATAGTTCCCCTTCATTGTGATGAGAAAGCAAACTCCTTAGTATGCAAAGTTGAAAATTATGATATAATTATGTTGATATCGGTGTAATGAACACCCAAACGAAAAGTTAGTAGCTTTTAGAAATGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATCCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGTGATACTATGGTATTAAAAACAAGCGAGTATTCTTTAATCGGCGTGAACGATCATACTTTGGTAACAGAGTCTGATGGACGCCGTTGGGTTACTCGGGAACCAGCTATCGTTTATTTCCATAAAAAATACTGGTTCAACATAATAGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 90348-91527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKS01000006.1 Enterococcus haemoperoxidus strain DSM 15920 Scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 90348 33 100.0 34 ................................. GCCCTCCTCAGCGTTTAAGTAATATACAAATTTT 90415 33 100.0 33 ................................. TCTCAAGGAAATGCAATCTATAAGAGATTCATT 90481 33 100.0 33 ................................. AGGAAAAAGAAAAAAGTATCGATCAGCTACAAA 90547 33 100.0 34 ................................. TCAAGGTCTAAACAGCTTGTTCAACTTTTTTTAT 90614 33 100.0 35 ................................. GCTAAGTTTTCAGCCAGTTTATCTACACTGATTCC 90682 33 100.0 36 ................................. ATTTATCCAAACAGACGAACTAAGAGAACTTTACGA 90751 33 100.0 33 ................................. TAAAAAAGTCTTTTAACCCGTCAAACTCAGAAA 90817 33 100.0 35 ................................. AGTTACTATCGCTGAAGAGTTAAGAACAAAGATGG 90885 33 100.0 35 ................................. CACTCTAACGCAGCAAAACTTTTTCTTGACTGCAT 90953 33 100.0 35 ................................. TGCTCTGATCTCTTGGATAACAGATTGACCCATTT 91021 33 100.0 33 ................................. AATTGCGTTAATGGTTTGTTTTGATATCACATA 91087 33 100.0 34 ................................. TCTACCGATACTCAAAAAAGCAATATACATCCAA 91154 33 100.0 35 ................................. CCCTTAAAATGGACGTGATATAAGCACGTTCTTCC 91222 33 100.0 34 ................................. ATTTATCTACAATCACCTGTGATAAGTATTCGTA 91289 33 100.0 35 ................................. TTCCTTCCATCTTTACAGGCGTTGCGAGATGGAGA 91357 33 100.0 36 ................................. TTGCAAGTCGTCTGTCTCTGCGTCGGCATCCAAATC 91426 33 100.0 36 ................................. CATTTATATCTAGTAAACTGCCAAAGTTTCGACATG 91495 33 97.0 0 ...........................G..... | ========== ====== ====== ====== ================================= ==================================== ================== 18 33 99.8 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : TGCAGTTATCATGACAAATGCTCAAGCAGGTGCAAAAACAATGACGATCAGTGCCATACATGCAGGAAAAGTATTTGTTGATATTTTAGGAAATAACAATGCGAAAGTAATACTGGATGAAACAGGTGGCGGAACATTTCCAGTTAATGGCGGAGAAATCTCTGTTTATGTAAATGAAGAAATTGTAGAAAAATTGAGTAAAGGAATTGATGGTTTGACATTGTAAAGAGAATAGTGATGAGAAGTACTTGCTATTTTTACATAGGTACATGTAAATTAGAGCGTGACTTCTATTGAAAGAATAATTATACTAAGTGTAGGAAGTTATTGGTATAAATTTGGTGCGAACCTTAAGTGCACATGAAATTACTAGGATATCCGCACCAGAATTCAACTGAAAATAGGTGTTAAATCGGATTTTTTCTCATTGTATTCACATTTTTAGATGAAGTCAATGCGAGAAAGTAATAAATATGTAAGTTGTTTGTTACTTTTTCACA # Right flank : TGCCTGCGCTGGTTAGTGTCCCTGTTTTTGTTAGTGGTCTCACTCTTTTATTTGAGTGAGTTTTTTTATTTCCCCCTTAATTCCAAAAAAACAATAAGTAAAGTTGAGTTGTCACTATAATTATCATCCTTTAAAAAGAAAATATTGTTCCAAGAATTCCATCATTATTAAAGAATTTTCCTGCTATATTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAATCCGAGACAAAAAGAAGCCGTTCTACATACTGAAGGGCCTTTATTAGTTATGGCGGGAGCAGGTAGCGGAAAGACTAGAGTTCTAACGCACCGTATTGCTTATTTAATTGAAGAAAAAGATGTTAACCCATGGAATATTCTAGCGATCACATTTACCAATAAAGCCGCAAAAGAAATGAGAGAGCGGGTTGGGAAACTATTAGAAGTTGGTGGAAATGATGTTTGGGTTTCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //