Array 1 270632-271331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JREG01000007.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000186 CFSAN000186_contig0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 270632 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 270693 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 270754 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 270815 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 270877 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 270938 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 270999 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 271060 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 271121 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 271182 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 271243 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 271304 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 287454-289009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JREG01000007.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000186 CFSAN000186_contig0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 287454 29 100.0 32 ............................. GCGGATCTGTTTTGAGGTGTTCTTCAACTGTG 287515 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 287576 29 100.0 32 ............................. ACTATTCGGTCAAAACAGCCTCCATTCTCAGC 287637 29 100.0 32 ............................. CCAGCGCAAGCGGGAAACAATCATCGGGCAAG 287698 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 287759 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 287820 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 287881 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 287942 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 288003 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 288064 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 288125 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 288186 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 288247 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 288308 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 288369 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 288430 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 288491 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 288552 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 288613 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 288674 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 288736 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 288797 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 288858 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 288919 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 288980 29 96.6 0 ............T................ | A [289007] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //