Array 1 510569-508527 **** Predicted by CRISPRDetect 2.4 *** >NZ_FKBS01000025.1 Bordetella ansorpii strain SMC-8986T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 510568 29 100.0 32 ............................. AGCGAAACGCTGGACGAAGCGGTTACCCGGAT 510507 29 100.0 32 ............................. GTCCCGGCCGAGTACTGCCCGGCCATTGAGCG 510446 29 100.0 32 ............................. ACCTGGCCCGATGGGCTGTGGCGCAGCTGCGC 510385 29 100.0 32 ............................. CCACACCGGAGCGCGTAGCGGACGCTGTAGCC 510324 29 100.0 32 ............................. CGCGCGCTGCCCCTGGTCGCGCATGAGGTGGA 510263 29 100.0 32 ............................. TTCGTCACCATCGTGTTGTATGGACGCCAGTT 510202 29 100.0 32 ............................. GCAACGTGGAACTGCGGGACATGGCCAAGGCG 510141 29 100.0 32 ............................. TCCTCGACGTGCTGATACGTCACCGGGTGTTC 510080 29 100.0 32 ............................. TACGTGACGCGGTTCCGACAAAAAGGCGGAAT 510019 29 100.0 32 ............................. CGGGCCCACGCGTCAACGTCGGTGAGGCCAAA 509958 29 100.0 32 ............................. CCGATCATCTGCTGTTCAATGCCCGTGCCCCA 509897 29 100.0 32 ............................. CCTCACGAACCCGTCCAACCATCACATCATCA 509836 29 100.0 32 ............................. GAATACCAGCGCGTGCTGGTGTCTGAATATGG 509775 29 100.0 32 ............................. AGGACGCGATAGGTTGACGGGGACCGTACTAC 509714 29 100.0 32 ............................. CTGCGTTGTCGATTGCAGCGCCGCTATCTGGT 509653 29 100.0 32 ............................. TCTACCGGCCTGGACCCTGAAGACGTGATGAA 509592 29 100.0 32 ............................. CCGCGGAAAAGCTGCACCAGGCGGCCCGCGTG 509531 29 100.0 32 ............................. CGCTTCTCGACCTCGCGATTGACCACGGCGGC 509470 29 100.0 32 ............................. CGGCCGGGCGAACGGGTGTTGACCAGCGACCG 509409 29 100.0 32 ............................. AATCGCGCCGCATGGGTGACATTGCGGCAGGC 509348 29 100.0 32 ............................. CCGCTGCTGCTGGAACAATGGAACCGTCGTGA 509287 29 100.0 32 ............................. AGCATCCACCGCCAGGCGCGCCGCGTGAAGCT 509226 29 100.0 32 ............................. TTCGGATACGGGGCACCCGTATCCGTTTCGAC 509165 29 100.0 32 ............................. GCCGAGCCGGAGAACAACGCGCCCGAGGGCAT 509104 29 100.0 32 ............................. CCGCCCGGAGAATTGCGCCGTCCGTCCATCAG 509043 29 100.0 32 ............................. GTCATCTCGGATTGCGACAACTTGGCCTTCTC 508982 29 100.0 32 ............................. GCCGTGAGGTTTTCGAGATCGAGATCGACGAG 508921 29 100.0 32 ............................. GCGAAAAGGACCACGCCGGCATTACCGTCGAT 508860 29 100.0 32 ............................. TCGCTGCCTAGCGCCTGCAGCGCTGCATTGAT 508799 29 100.0 32 ............................. GTGGAAATAATGCGAATGCACATTTTAGATTT 508738 29 100.0 32 ............................. CCCCCTTTGGGGGTCGAGACTGGCGGGGTTGG 508677 29 100.0 32 ............................. ACGGTGAGCATGCCCAGCGCCAAAATGTCGAC 508616 29 96.6 32 .......................T..... GCGAATTACATCGCGCCGGCCACGCTGCAATC 508555 29 89.7 0 ............T....A....C...... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.6 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : GTGCGGATCAGATCAGCCAGCGGTGCCGGGGCGTCGCCCGGGTACTTGGAGAAGTACGCATCGCTGGCATGCCAAAGGGCTGTGGACCATGTCTTGTTCGCTGTATCCAGTGCCATGGCAGCAAAGCGAAACACGCTGGCTTCTGTTTGCGATTGAGCCGTATCGACGCGACCCAGCGCGCCGCTGATGCAGCGGTCGAGTACGGCTTGTTCCAGGTCGCGAGCGGTCATGATGAGGTAGGGAGGCGAGGGGGTCTCGAGAATTATGGCACTGGCCAACGTGTTGGGATAGGGAAGGGGGCGTTGGCCTCTCTAGTGGCAGGTGAACTGCCGATTCCTCGGATTTTTCACTGATTGGGTATTTTGAAAGATAGATAAGGGGGCAGATCGGTCCGATGGGTCATTGTCGACGTGGTTTTTGTATTGCAAATTTTTTGCTAAAGAATCGGTAGAATTTTTTAGGTCTAAATTTCTCTTTGGAAATAAGAGGTTATGCTAAGA # Right flank : GTGACCGGCCACCCCAAGGACTTGAGTCAGCGCGTGTGTTCCTCATGCATGCGATGCCGACTTCGATCAGCTCGCCGTTCTGCGGACTCTCCGTACTCCCCGCACATGCTCTTGGCCGTTGACTGGAGTTCAGCCAACTGACTAAAAAAGACGACCGCCACTACCCCGTAACCCGTCGACGATCCAAATTTCAGCTCGGCGTCCGTTCCCTGGACGACCACCTATCGCCCCTTGGCGCGATTCCGCCTCCTTCCCTTGCAGGCATGCAGCTTGCTGCCACCTCCCGATCCATCCGGAGGTCCCCCCATGCCTGACTCTTCTCCCACCGCCACGGCCACGGGCGCTGTCGACGTCACCCTGCATGTCAACGGCACCCCGCATATCCTGCGGCTCGACCCACGCGCCACCCTGTTGGACACCTTGCGTGAAACCCTGCACCTGACCGGCAGCAAGAAGGGCTGCGACCATGGCCAATGCGGCGCCTGTACCGTGCATCTCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 523980-522304 **** Predicted by CRISPRDetect 2.4 *** >NZ_FKBS01000025.1 Bordetella ansorpii strain SMC-8986T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 523979 29 100.0 32 ............................. GCCACATGGTTCTACATCGTCGGCGCCGAGCC 523918 29 100.0 32 ............................. CGCCGGAGCGCGTTCGAGCAAATGGATACCGG 523857 29 100.0 32 ............................. CCCGTTGAGATTGAACGGGCGGATAGCACCAT 523796 29 100.0 32 ............................. GTGTGCCACCTCATGGCGGCGCTTGGTCTGCA 523735 29 100.0 32 ............................. GCGGGCCACGCCGACGCATTGGCGGCTGCGGC 523674 29 100.0 32 ............................. GTGGTGATCGGCGCGGTAGGCGCCAGGTCCTG 523613 29 100.0 32 ............................. ATCCACAGCAGCAGGCCGGCAACCGCCAGCGC 523552 29 100.0 32 ............................. ACGGTGCGCACCGTGCGCTCGGATGGGTATTC 523491 29 100.0 32 ............................. ACGTGCGCCAGTACGTGCTGGCGCTTGCATCG 523430 29 100.0 32 ............................. CGAACCCCAAGATTGCCAAGAAAATGGCCAAG 523369 29 100.0 32 ............................. ACGCAGGCGACACGAGAACAGGCCGAGGATGC 523308 29 100.0 32 ............................. GCGGCGCACAGAGAGAAATTCTGATGACGACG 523247 29 100.0 32 ............................. CATCGCCTGGCGCCACAGGTCGGCCTTCAGCT 523186 29 100.0 32 ............................. GCCGGGCCGAGCGACGAGGAGATCGAGGCCAT 523125 29 100.0 32 ............................. CCGCGACCGATCCCGCCGACCCTGATGCGCTG 523064 29 100.0 32 ............................. CCTGGCCCGTCCACGCCGTGCCACACGTCGGC 523003 29 100.0 32 ............................. TCACGATGCTTCAGTACGATCCTGGGTCCCAC 522942 29 100.0 32 ............................. TAGGGAAAGGCGTTGTTCTCCAGCGTGCGCCT 522881 29 100.0 32 ............................. TGGGAACCCTACGAAATCAGCCTGGTGTCCGT 522820 29 100.0 32 ............................. CCCAGGTACGGCGACAGGTGGCCCTGCTCGAT 522759 29 100.0 32 ............................. CCCAACTCGTACATCTTCGGCAGGGCTATGCC 522698 29 100.0 32 ............................. ATGGAGCCCCGGCCCTGACGATGGAAGCAGAC 522637 29 100.0 32 ............................. GAGACGCGCCGTCACCGGGATTGCCAATGATC 522576 29 100.0 32 ............................. TCTCTTTTTCCGAACGGGATTTGCAGCCATGA 522515 29 100.0 32 ............................. AACGACGCCTTCGCGCCGGACGTTTGCAAGAT 522454 29 100.0 32 ............................. GTCGACCCCGCAGGGCAGTAGGCATATACCGA 522393 29 96.6 32 .......T..................... TCGTTCGAGAGCGTGGACATCGTCTGGATCGA 522332 29 79.3 0 ...C..............AA......GTT | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.1 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TACAAGCTGGCCGCGAATTTCATGTTGGCGTGTGCGATCGAAACCTTCGGCGAGGCTGCTGCGCTGGTGTCTGGGCATGGCTCGGATGCGGCGTTGTTTCACGAGCTGATCACCAGCAGCATCCTGCCCGGGCCTGTGTATCAGGGGTACGGGAAGATGATTACCGAAGGGCGCTATGAGCCCGCGCTGTTCAAGGCCCGGTTGGGGTTGAAGGACGTGCGGCTGGCGCTGGCGGCAGGGGAAGCGGTGAATACGCCGTTGCCGATGGGGAGTGTCGTGCGCGACAGCCTGATCGAGGCGGTTGCGCATGGGGATGGGGAGAAAGATCTGGCGGCGTTGGGGAAGGTGGCGCAGCGCAGGGCGGGGCGGGAGGTCTGAGGGTTTTTCTCTTTGTGAAGAGCTGCCTGATAGGCGGTTGATGCTGCCAAATTTTGGCAGGAAAAATCGGTAGATTTTTTGTGTCCGGAAATTCGCTTATTAAACAGTGGGTTATGCTAAGA # Right flank : ACGCACTCAGAAAGAGGCTGAACGACTTCCTGTCAATCTACGAGGCAAATTACCGGTTTCCTTGATCTAGTCGGCCAAAGCGATAAAATGACCAAAATTTCGGTCATAAATTCTTCCTATGTACAACGACCTTGCTTCCGTAGGACAGGCGATTCGCCGCCGTCGCGAGGCTCTTGGCCTTTCACAGGCACGGTTGGCGCATCTAAGCGATTTGGCCCTGAGCACCGTCTCGGGACTGGAGAATGGCACGCTCGCAGACCTGGGCTACAACCGAGTTGCGCAAATTCTCAACGTCATTGGCTTGGTGCCCTCGACCCCGGTCCAACGAGTGCTCGGTCGACAGAACGGGTTGTTTATGGCCGCCAAGACCGCCAGTGTCAGCTACAAGGACGAATTGGACGTACCCACCCTCATAACTGCGCTTGCAACAGGTGAGGTACCGCGAAAGTTCATCGCTCACGTGGCGCACCTGCTTGATGAGGCTCCCCTCCCTCTGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 357626-359365 **** Predicted by CRISPRDetect 2.4 *** >NZ_FKBS01000014.1 Bordetella ansorpii strain SMC-8986T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 357626 29 100.0 32 ............................. TTCTCCGGCGCGCTCCAGAACACGCCTTACGC 357687 29 100.0 32 ............................. TGGGACTGTCCCCTGCTGGCCAGTCTTCGGAT 357748 29 100.0 32 ............................. ACCTGCGCGCCGTAATGCACCACCGACACGCC 357809 29 100.0 32 ............................. GAGAAGGCGATCCGCTTGGAAGAGCAGATCAA 357870 29 100.0 32 ............................. ACGGCAAACTGTACTCGTATGGCCGCCATTTC 357931 29 100.0 32 ............................. ACGGCCAGTTCACGGACCTGCAATATCACCAT 357992 29 100.0 32 ............................. CCCCGTTTCCAGTTGGCGCAGGCTTGATCGGT 358053 29 100.0 33 ............................. TACTCGCCGATCTGGGTGGTGAACCCGGCCTGC 358115 29 100.0 32 ............................. GCAACCAGCGAGGCCGTGACAGACCGGTCACG 358176 29 100.0 32 ............................. TCAGTGAAATAGCGGGTTTGCGTGCGCATGAT 358237 29 100.0 32 ............................. CGGTGGCGTTTCGCCTCATTTATTGCGCGGAC 358298 29 100.0 32 ............................. TCAGTGAAATAGCGGGTTTGCGTGCGCATGAT 358359 29 100.0 32 ............................. ACACGGTTTAGCAGTGTCAACATAGGTACAAA 358420 29 100.0 32 ............................. ATACGCTGTCTTCAATGCTTGCTCCCATGGCG 358481 29 100.0 32 ............................. CGCATGCAGGCCGACGATTTGACGACCCAAAT 358542 29 96.6 32 ............................A TGGAGCGCGGCATTCAGCGTGCCATGTCCGTC 358603 29 100.0 32 ............................. GCCCGCGGCATCTCTGCTCGCGGGCCAGCATT 358664 29 100.0 32 ............................. ACAAGGCGCCAATTATCAGGGCCATGCGAGAG 358725 29 100.0 32 ............................. CCATCGACCAAGAAGCCTTCTATGGCGGCAAC 358786 29 100.0 32 ............................. CCTGGCGCATTGATCTCCATGCAGCCTGCCGA 358847 29 100.0 33 ............................. CACTCCATCATCCACGGCTGAACGCGGGCCTGG 358909 29 100.0 32 ............................. TCCATCGGATTTTGCGCCTGCTTTCCATAGCT 358970 29 100.0 32 ............................. TAGAAATTCACCGTACCGCTGGCACCGCCCGC 359031 29 100.0 32 ............................. CGAGGCCTCGATGGACCATCCTCTGACTGCTG 359092 29 96.6 32 .............A............... GGCGGGCAGCCGCGCAGCCGTGCCACTCGTGC 359153 29 96.6 32 .............A............... GTCGAGATCCTGCGCGGGCTGGAACGACGCTC 359214 29 96.6 32 .............A............... CCGGAGCCAATCTCGCCCTTGCCAGTGGCGAT 359275 29 86.2 32 ......T.....CA......A........ ATGTACAAGGTGTCGGCCGACTGCGTGACGTG 359336 29 79.3 0 A...........CA...A.......T..A | T [359360] ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.3 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : TCGGGCACCCTGGCGGTGACGCGTCCGGATATTTCCACGCAGATCCGTTTCCGCAAGGAAGAGGAACTGCAGAAGAACACTAAAGGGCTGCGTGCGGATGGGTTCAACGGCGACGTGAAAGTGCTGACGTCGTGCCCGTCGTGTTTGCAAGGGCTGTCGCGGTATGAGGGTGATACCGGCGTGGATGCGGATTACATCGTGGTCGAGATGGCGCGTCACGTGCTGGGCGCGACGTGGATGGAAGACTACGTGAAGCGCGCGAACGAAGGCGGGATCGAGCGGGTGCTGGTGTAGGTTGCCGCCTCCGGTTTGATTGCGTGAAAAATACGGCGAGTTTTACTCGCCGTATTTTTTGGGGCTTCGGTTGTGGGGTGTGGTGAGCGAGAGGGGCGTTTTTCGGCGTGGCGGCTGGGAATTTTGTGTTTCGGATTTGTGGCTGAAGTATCGGTAGAAAATTTGGCTCTGGAATTGTTATTTAAAAATAGAGGGTTATGCTAAGA # Right flank : AGGCGAGTAACAGACCTCTTAGGTTGGGCTCTCCATCACTTGGGTCTGACGCACCACATCCTGAAGCACCTCATCAAGTCCCGTGTAGAGCGCGTTCATCACTTCGTGTGCGTGAAACACACGATGCCGTCGTTGAGCGTTTGCCGGTCGCAGAATATCCAAGTCGACCAAGATTCCCACGGCTGTGTTCGCAGAGGGAAAGCTGACCTGTAGGCGTTGGGCGACCATGCTGACTGTCACGATGGGCTGGCCCAGTAGCAGCTTGAGTAATTCCCACACGGCGGCATCACGTCTTTTAGTTTTGCTGCCCACTGCTTGCTGCCAGTTGCCTTGAATGATGCGCAGCCGTTGGAGCAGTTGTATGGTGTGCCGGCAGGAGGCCACCACACATTCCAGGAATAGCTTTAACCATGGCTCCCAATTCAGGCGCTTCTGGGCTTCGCTCAGCGCGCGATAGTATTCGCGTTGCCGCACCTTCAGGAAGGTTGCAAGATGGATGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //