Array 1 4705-2292 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000241.1 Marinitenerispora sediminis strain TPS16 scaffold_240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 4704 29 96.6 32 ...........T................. GCCCTCTCGACGCTCAGGTCCGAGGGACTGGT 4643 29 100.0 32 ............................. CCCGGACGGGTCGTCATCCGGGGCGTTCTCAC 4582 29 100.0 32 ............................. AGATGATCAGCCCTCTGATTCAGGTCGACCAC 4521 29 100.0 32 ............................. TGCCGCCAGCACTGGACGCAGTAGCCGAGATC 4460 29 100.0 32 ............................. CAACTTTACGTTGCACTGCAACGGAACGTTGC 4399 29 100.0 32 ............................. CCCCGGCCAGATGGTCGGGGCGAGGAAACGAG 4338 29 100.0 32 ............................. ATGACCGCGGCGGACACCCCGGTGTACGCCGC 4277 29 100.0 32 ............................. CTCTCGATGCGCTGGCCGAGGGTGCCGTGCAG 4216 29 100.0 32 ............................. GCGTCGGCGTTGTCGGTGTCTGGGCAGATCAG 4155 29 100.0 32 ............................. ACCGCCGGCGACCAGCTCATCTCCGACTGGAT 4094 29 100.0 32 ............................. CCGCCTGACACGGGGCCTCGGCCAGCAGAGGG 4033 29 100.0 32 ............................. TCCAGGGCGGGCTGGATGCGGTGCTGGGCGAG 3972 29 100.0 32 ............................. ATGCCGGCCAACGTCACCGCCAGTACGGCGCA 3911 29 100.0 32 ............................. GCGTTCCGCGAGTTCGTCGTAGCCGGCTTGCC 3850 29 100.0 32 ............................. GAGATCCTGCGCCAGATCCGCCAGACCGGCTC 3789 29 100.0 32 ............................. AGCATCGGGGCCGCCTGGAACTACTTGTCCGA 3728 29 100.0 32 ............................. GACCGCCGCGCCGAACTGGCTGCGGCCGGCCA 3667 29 100.0 32 ............................. GTGTGGCCCAGCTTGCGCAGCTCCATGGGGCT 3606 29 100.0 35 ............................. AGGAGGTGGCCGTGGCTGCCGCGCTGGCGCCGGCC 3542 29 100.0 32 ............................. GCCGACCTGCGCGACACGGAGTTCGATGACCC 3481 29 100.0 32 ............................. GCGGCCGAGGACTGGATCGACCGGGCCGAGTG 3420 29 100.0 32 ............................. CGCGAGTACGAGCGCCAGTTCCTCCACCACGG 3359 29 100.0 32 ............................. CGCGCACCAGCTCGGGCAGGTTCGCCATGGCC 3298 29 100.0 33 ............................. GCGCGCGCGCCGCGCCCTGAGCCCGGAGGACAA 3236 29 100.0 32 ............................. ACCTCCTTGAGGTGATGGGCGGTCCCGAACGA 3175 29 100.0 32 ............................. GCCACCCTCCAGCAGCGGCTCCACGCCGAGCG 3114 29 100.0 32 ............................. CGTGCGCGCCTCGCTCACCGACCGCACCTACG 3053 29 100.0 32 ............................. GGTCACGATCCCAGCTCCGCTCGGATCGCGGC 2992 29 100.0 32 ............................. CCTTGGGACTGCTGAACTTCCTCATCGGCGCC 2931 29 100.0 32 ............................. CTCGCGGTGATCGAGCCGTTCTCCATGGAGTT 2870 29 100.0 32 ............................. CCCTGGGTTTATTACATGTGCCAAAACGGGCC 2809 29 100.0 32 ............................. TCGGGCAGCCAGGTCCGCACGCGAACCTCGCC 2748 29 100.0 32 ............................. GTCGTCCGGCAGTACCTCGACAGCCTCGGCCT 2687 29 100.0 32 ............................. CTCTCGATGCGCTGGCCGAGGGTGCCGTGCAG 2626 29 100.0 32 ............................. GCCCAGTTCGAGGCCCAGTTCGCCGCTGACGG 2565 29 100.0 32 ............................. ACGTCGGGCGACCGCCGGTTCGGGGCGTACAT 2504 29 100.0 32 ............................. GGCGAGTTCTGCTTCTGGTCCTTCTTGTCTTC 2443 29 100.0 32 ............................. AGCACAACGCGATGACCGGCCGACGAAGCCAC G [2426] 2381 29 100.0 32 ............................. CCGAGACGACGTAGACGTCCCACCCTGGCCAC 2320 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 40 29 99.9 32 GCCCGCCCCACGCACGTGGGGGTGACCCG # Left flank : CGCCCCACGCACGTGGGGTGACCCGGCTCTGCGGTCGCCGAGGTACTCCTTGAGGT # Right flank : TCCGTCCCAGCCGGGGCCTGACAGGTACAGGACAGCGGGACGGCCCGCACGCGCCGGTGGCATGGCTACCGCAGGCGTGGTGCGGGCCGTCCCACGAACTGTAGCGGGCATCGCGCTGGGACCCCTAGAACGCAGGCGGTCCCGGCCTACTCTGGCAGTGCGAGCCGAACAGAACAGGACGGGACCATGGGGCAGACTACCCCGACGGCGGCAGCCCTCCGCGAAGCCATGGACCGCGCTGGCGTGGGCGTGCGCGAGCTTGCCCGGCGAGTCCACTACAACCATGCCTACGTCAGCCGCGTCCTGCACGGACGCCAGCAGCCCAGCACTGATTTCTTGCGCCTGGTCGACACTGAGCTGGGCACCACACTCGCGCCGACCACGCCCGTCCCGCCAGCATCAGACCCTGGAGACGACATCGGGTCGGAGGTCGCTCACCTCCACGACACCATCCGCCACCTGGTCGCACTCGATGGCCGCTACGGCGGGGACGCCATCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 1838-346 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000001.1 Marinitenerispora sediminis strain TPS16 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1837 29 100.0 32 ............................. GTTTACGCGTCGCCCAGTTCATCTTTGAGATG 1776 29 100.0 32 ............................. ATCGCGCGCATGACCGGGCTCACCGACAGGTC 1715 29 100.0 32 ............................. TGGCGCACCGAGCGCGAGAAGCGCCGCGCGGC 1654 29 100.0 32 ............................. CGCTGCGGACCATGGCGACGCCCCTGTTTCAG 1593 29 100.0 32 ............................. CTGGAGACCACCCGCTATTGGGACCGGCTGCA 1532 29 100.0 32 ............................. TCAACGCCGGTGCCGGCCAGGAGGTGCCGCCG 1471 29 100.0 32 ............................. GCGGTCCGCGCGCTCAGCGCGACCGTTGTTCG 1410 29 100.0 32 ............................. GTTCCCGGCCGCGGACTCCAGGCTGAGCAGCG 1349 29 100.0 32 ............................. GCCCACCCGGAGCTGACTCTGGAGCGGCACGT 1288 29 100.0 32 ............................. TTCGCGCGATGTTCGGCCGAACACCAACGGAA 1227 29 100.0 32 ............................. CGACTGATCAGAAGAGAAAGGAAGAGCGAATG 1166 29 100.0 32 ............................. GCGGCCTACGTAGACCTTCGAGGGTGTGAGCG 1105 29 100.0 32 ............................. ATGCGGGTTCCTCGACCAGGCGGGAAAATCCA 1044 29 100.0 32 ............................. TGCTCTCGCGCGAGCCGATGCTGCGCTCGCGC 983 29 100.0 32 ............................. GCGGTCGTGGGGCACGACGAGTTCATCACCTA 922 29 100.0 32 ............................. GACCTGGGTGTGGTGCTGGCAGGCGGGGCAGG 861 29 100.0 32 ............................. TGCCGGAGTCGTGTCGTGTCGCAGCGACACCT 800 29 100.0 32 ............................. CCCCTTGGGGCGGCAACTGTGCGCAGTGTCCA 739 29 100.0 32 ............................. GAGCCCGTCGGCCTTTTCCGGCGGCCGACCCA 678 29 100.0 32 ............................. GGCCGCGCCTGGTGCGGCGTGCACCGGGCGGT 617 29 100.0 32 ............................. GATAGGTGATGCGGGGGACAACGTCATAAGCT 556 29 100.0 32 ............................. CCGGCCGCGCGCCCGGCCAGCATCCCCGGCAG 495 29 93.1 32 .........C..................C CCCCGACGGGTGTGCGACCACCCTCGGGGCGT 434 29 89.7 31 ...T....................AC... GGGGAACGTGGACCCGCAGATTCAGACCCTA 374 29 79.3 0 .CC...T......C.A........A.... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.5 32 GTGCGCCCCACGCACGTGGGGGTGGACCG # Left flank : GCCTCGTCGAACTGTGGGACCCGGAACGGGGCAGCGTCGCCGGGGGCGTCAACCACGGCGACGACGTGATGTGAAAGGCGACCATGGCGAACATGGTGGTCATCTCGACCTCAGCCGTCCCTGCCCACGTGCGCGGCGCCCTCACCCGCTGGATGGTCGAGCCGAGAGCGGGCCTCTACGTGGGCACGCTCTCGGCCCGCGTCCGGGAGGAGCTGTGGGACATCGTCCAGGCAACCCTCGGCGAGGGATCCGCCGTCTGCATCCACCCGGCGGACAACGAACAGCGCTTCCTGGTCCGAACGGCGGGCCCGCAACGCCGGGAGGTCGTCGACTGGGGCGGGCTCCAGTTCGTGACGATGAACCCGGTGGAGGAGGAGCAGGTGCCTATTCCGGAGGGGTGGTGAATGCGGGGAGTAATGATGTGATTACAAGCATGCTCTGAGTGGGGTGTTTTCTGGTAAAGAAATGATAACGGGCTACGTCGTTGCAGGTCGCGAAGT # Right flank : GAACGCGACGGGCTCGTAGAGCTCGAACGCGGCGCCCGCCCCACGCACGTGGGGGACCGCGCAAGGGCTAGGATTCCTGGCCGTAAACGACCGTGCCCCCCATGTGCGGAGGGAACAGCTCAGGCCGCCGCCGGCAACCCGGTGTAGCGTTCGACGCAGGTGACACAGCCCCGCCCACGCCCCCGCTGTGGGCTACCTCGTTCTCCCCGGGTGGATTCGGCCGCCCGTGGCGCGGTAGATCGTGCGGGGGACCGGTGACGTCGGGAGGCCGGTCACGGAGCGGAGGCGGTGTTCGTAGGAGCCGTCCTCGGCGGGTGGGGGCGCCGGGGACGGCTCCTACGAACAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCACGCACGTGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 11181-12682 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000001.1 Marinitenerispora sediminis strain TPS16 scaffold_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 11181 29 100.0 32 ............................. TTTCCTACGGTGAGTCGCATGCCCGCGAGTCT 11242 29 100.0 33 ............................. GAGGCGCGCACCCGGCCCGACAGATCGGCCGCC 11304 29 100.0 32 ............................. CCGGGCTCCGACGACGACCCGTTGTTCGCCGC 11365 29 100.0 32 ............................. GCTCTGCGGTCGCCGAGGTACTCCTTGAGGTC 11426 28 96.6 32 .....................-....... GCGAGGGGGTGACCGTGGCAGACGACGAGGAG 11486 29 100.0 32 ............................. GGCCCCGCGGCTGCCACCGCGAGGCCCCGATA 11547 29 100.0 32 ............................. CGGTCGGTGATCGAGATGCGGCTCGACTCGAT 11608 29 100.0 32 ............................. TGTCACAGCCGGCGTCACGCCGGCGTCACGGA 11669 29 100.0 32 ............................. TCATCGGCCGAGGGCGGACGCGCGGCAGCGGC 11730 29 100.0 32 ............................. GGCCCACCGGCGTCGAGCGGTTCCCCAACGAG 11791 29 100.0 32 ............................. GTCACCGACGCCGGCCGCGTCGACACGGTCGC 11852 29 100.0 32 ............................. TCCCCCGACTTCCGCGAAGCCGCGGGGACCAC 11913 29 100.0 32 ............................. TAGCGGTGGAACATCAGCCCGTCGCTGCCCTC 11974 29 100.0 32 ............................. TTCGGATTCGACACGTACAAGACGCAGAACAT 12035 29 100.0 32 ............................. TCGCGCCGGAAGATCGACGCCGCGATGGCCGC 12096 29 100.0 32 ............................. CTCGCGCGACTGCGACGGCTCACCGCCCGCCA 12157 29 100.0 32 ............................. GTGATGATCTGAGCGTGCATTGGTTCCTTCCT 12218 29 100.0 32 ............................. GCGGCATCGCTCCGGCGGTCGCGCACCAGGCA 12279 29 100.0 32 ............................. TCGTGCGCCGCTGGCCGGACGTCATCGCCATC 12340 29 100.0 32 ............................. CGCGCACCAGCTCGGGCAGGTTCGCCATGGCC 12401 29 100.0 32 ............................. GAGCTGTTCGTGTCCCCGTCGGCCCGGCTGCG 12462 29 100.0 41 ............................. GAGCTGTTCTCGTGCGCCGCTGGCCGGACGTCATCGCCATC 12532 29 100.0 32 ............................. GAGATCCAGAACGCGGCGTCCATCATCGCCCC 12593 29 100.0 32 ............................. CGGACCGGGCGCTGGCCGAGGTCGAAGCGTGT 12654 29 89.7 0 ....C................A......T | ========== ====== ====== ====== ============================= ========================================= ================== 25 29 99.5 32 CTGAGCCCCACGCACGTGGGGGTGGACCG # Left flank : TCACCCGGGAGGGCGGACGGGTCCATTGCCTGGAACTCGTAAGTGATCTTGCCGATATCATGGAGCGCGGCCCAATGGGCCACCAGGAGACCGGCGTCATCGACATCCACTCCGAGCGCGTCGACAATGGTCAACCGGGCACCGGCGGCTATGTGGTCACGCCACAGCGCTTCGGCGGCAGCTCCGGCATCGAGAAGATGACAGATAACCGGATAGGTGACGCCTTCACCCAATCCATCCGATTTCCCCCACAGGCGAAGATCAACATAACCCTCGCGATCTTCACGCGAGGGAACAGAATCCTCCGACAAGGACCAATCCCCTCAGTCCAGCCCTCCCCGATACCGCGTAGATTAGCGACGAGGGCGGACACTTATCAGACTTTCACGAGAAAAATCATGCAACTACTTTCTGTCAGCGAATGGCTACAGCGACTCCCAACTGGCGGCCATTTCATGTCACAAATCAATAACGGCCCGCGTCGTCCCAGGTGAGGAAGT # Right flank : TGCGTGAGCTGTCCAGACGGATGACGTCGTCTTGTGAGCCCCACGCCACCCGAAACCACCCCGGAGCCCCCGCCTTCAGCTCCGCAGCCGGTCGAGCGCCCACTCCCGTCAGTGCCGGTCTACCCCCAGCATGGCCAGCAGGTCCGCTCGCAAGGCCACGAACTCCGGGGCCGAGCGTCGGCGTGGGCGGGGGAGGCCGATCGGCTGGTCCTGGGCGATCACGCCGTCGCGCATGACCAGCACCCGGTCGGCGAGCAGGACCGCCTCCTCTACGTCGTGGGTGACCAGGACGACGGCGCAGCCGTGGCGCTGCCAGAGTTCGGCGACGAGGTCCTGGGCTTTGATCCTCGTGAGCGCGTCGAGCGCGGAGAAGGGTTCGTCGAGCAGCAGCAGGTCGGGGTCGCGGACGAGCGCGCGGGCCAGTGCCGCGCGCTGGGCCTCGCCGCCTGAGAGGACCTTGGGCCACACGTCCACCCGGTGGCCGAGGCCGACTTCCTCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 39053-39320 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000013.1 Marinitenerispora sediminis strain TPS16 scaffold_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39053 29 100.0 32 ............................. GCCGCCGGGGTGCGTCCGCTGCGCAGCAGGAT 39114 29 96.6 32 ............................C CCGCTCCGCCTCGACACGCTGGCGGCGGGTCA 39175 29 100.0 32 ............................. ACGCCGGGCCGGGTGCCGTGCACGATGTCGGC 39236 29 96.6 29 ............................C TGGTCGTATGTCTGGTAGATCCGCAGGCC 39294 27 82.8 0 .C........--.AT.............. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTGCGCCCCACGTGCGTGGGGATGAACCG # Left flank : TGGCGCTTCCGGCGCCGATGAGCTGGTCGTAGACGATGTCGGGGGTCATCCGCACGAGCGTGAGGCCGCGACGTCGCTGCCGGATGATCTCGTGCCCGGCGGCCACCGGGATGAGGTGGGTGAAACCCTCCAGCGCGACCGTGTCCCCGTCATGGACGAGCTCGCGGACGCCCTCCTCCAGGGAGACGATCATGGGGCGGCGTCCCTGTTCGTATCGCGAATGCATGTTCTCGAAGCGAACACCATGCGCCCGACCGTAACCCGGGGTGTGGCCCCGGTCAAGGGGCGGGGAAGCGGGGAGTGGGGTGGCGGCGGTCGAGACCGGCGGCGGTTCTGGGGTGTGCTGGGTGTGCCGCGCGTGTCGGTCCGCCGCATCTTGGGGGTGCGAGGTGTGGAGCGGCACCGGGTACGGCATCATGGCGGGGTGCTGGTCTCGCTGTTCGGCGCCACGAGTGGATTTCGTTTTGGTAACACCCTTGCTCCGCCCCAGGTCGCAAAGG # Right flank : GCCCGCGCGCTTGAGCGGCACACCTTCCTCGGCTAATACGCCCCCGCCGGACCGGCGTGCCCCCCGGTCCCGGTCAGACACGATCGTGGAATCCGTCCCCCGTGCGAGCTACGCGCAGGTGTCCACCGCAAGGTGACGATCTCGGGCCGCTGGCTCCGTAGCGTTCTCGCTGCCGCGGCGCTCCGGTCGCGGATCCGGCGGAGGAGTCTTCATGAGGCTGGTCTGGCAATTCGCGGCCGTCGCGGCGGTCGCCTTCCTCGGCGGTCAAGGGGTCATGGCCGTGCAGGGAGACCCGTGGCTCACGCTGGCCATCGGCCTGCTGACGGCGGTGGTCTCCGTGCCCGTCTACCGGTGGGTGGTGCGGCGGACCGAGCGTCGCCCGGTCACGGAGCTGGCCGGAAGGGGCGCCGTTACCGCGACCGGCCTGGGGACCCTGATCGGCGTCGCGGTATTCGCGGCCGTCATCGTGAACATCGCCTTCCTCGGGGGCTACCAGGTCC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41197-42628 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000034.1 Marinitenerispora sediminis strain TPS16 scaffold_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41197 29 100.0 32 ............................. TTTCGTGCATGCAGCGCACGATACACGTGCAC 41258 29 100.0 32 ............................. CTGGGCTTGGATCCGGTCCACTTGGTCGCGAG 41319 29 100.0 32 ............................. CAGCCCACCGCGATGCTCGTCGCGAGGGCGAC 41380 29 96.6 32 ............................A GCGGCCCCAACAGAGACCGCTCCCTACACCGG 41441 29 100.0 32 ............................. GTCGCCCACGTCGTGGTGTCGCCGGAGCGACG 41502 29 100.0 32 ............................. TCCGTGGCGAATCGCGGCGTGCCGGGCCGCGT 41563 29 100.0 32 ............................. ACCGTGGCCCGCATGTACGGCACGCCGGCCAT 41624 29 100.0 32 ............................. AGTCCGGCGGCCGTGGAGACCCGACGAACCGA 41685 29 100.0 32 ............................. TCGTGCGGGGCGCTGGTCGCGTAGTCGCCGAG 41746 29 96.6 32 ............................C CGGACCTGCGGGTCCGGGCCTACGTCCAGTTC 41807 29 100.0 32 ............................. CTCCCGGTCCGCGCGCTCGGCCATGACCCGCT 41868 29 100.0 32 ............................. TACCTCGTCGGCGTAGGCGCTCGACTGGTTGT 41929 29 100.0 32 ............................. CTGGTCGGCTGGCACTCGGCCGTCAGCGTCGA 41990 29 100.0 32 ............................. CACTACATCAACGAGACCTACATGTTCGGTCG 42051 29 100.0 32 ............................. GGGTTGACGACCTCAGGGTCGGTGGCCAGAGT 42112 29 100.0 32 ............................. AGGTCGCCCGGGGTGAACTCCATGCCGGACAG 42173 29 100.0 32 ............................. GGATGGGGCGTCACCCTGCATGACGCCCTTTC 42234 29 100.0 32 ............................. CAGTGGAACGGCGGCATCCCGCCCCGCACGGA 42295 29 100.0 32 ............................. CGCGCCGCCTACGTCCGCAAAACCATCGAGAA 42356 29 100.0 32 ............................. CTGTTCAGAGGAATCCGTCGACTTAGGGAGCC 42417 29 100.0 32 ............................. GATCTCCACCGAGCTGGCGAGCGGGATCGGGG 42478 29 100.0 32 ............................. TCCGTGATGGCCGTCGACATCCTCCGCAAGGC 42539 29 100.0 32 ............................. GACTTCTCGACGGGCGGCCCCGACGGCGGCCT 42600 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : CGTGATGGACGAGGTGGAGGCGGCGCTGGACGACACCAACCTGCAGCGGCTACTGGTGATCTTCGAGGAGCTGCGCTCCACGTCGCAGCTGATCGTCATCACCCACCAGAAACGCACGATGGAGGCGGCCGACGCCCTGTACGGCGTGACGATGCAGGGCGACGGCATCTCCCAGGTGATCAGCCAGCGACTCGACCGCAAGGCGGGCTGACCTCCCGATCCGAAGCCAGCGATCGACCGGGCCGCGACGCGCGTCCTGCGGACAGAGACGGTCCGCGATTTACGCGGTTCCGAAAGCATCGCGGACAAAAGCCGTCCGCATCTCGCCTCAGTATGCGGCCCGGGCTCTTCGGTAGTGAGGCCATCTCCTACGCCCTGCCAAGGCGGTGACCTGCGGCTACGCGCCCTCGCGCCGAACAGTGGTAGGAAAGGGGCGGGAGGCATCGATGGCGTTGGGATTGCGTTACGATAACGGACTGGATCGCCGCAGGTCATTCAGT # Right flank : ACCGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 405-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000376.1 Marinitenerispora sediminis strain TPS16 scaffold_376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 404 28 100.0 33 ............................ TGCCCCGGCGGTTTCCTGATCGAGGTGCGTGAC 343 28 100.0 33 ............................ TCAGCCACCCGGTACACCGGCTCCTCCCCCGGC 282 28 100.0 33 ............................ GCGGCGGCCCTGCGCCTGCAGGCCCATGAGGAG 221 28 100.0 33 ............................ GACCAGGAAAAATCACCGTGTGCACACGACTTC 160 28 100.0 33 ............................ GCCGTCTCCGCATGACAGGCAGGTCCCGGACTC 99 28 100.0 33 ............................ TGCCCCGGCGGTTTCCTGATCGAGGTGCGTGAC 38 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GCCCGCCCCACGCACGTGGGGGTGACCC # Left flank : | # Right flank : CTCAGCCACCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 15487-14115 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000129.1 Marinitenerispora sediminis strain TPS16 scaffold_128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15486 29 100.0 32 ............................. CGGCGCCTGTGGCCGCTCATGCGCGATGGCCA 15425 29 100.0 32 ............................. GCATCCACACCCCCATTCGTCTCGGCAGTGGC 15364 29 100.0 32 ............................. CACCCGATCCGGATCCGGGTCCAGGCCGACTC 15303 29 100.0 32 ............................. TTGGGGCGGCAGTTCCGCCTGTCTGCACGTCG 15242 29 100.0 32 ............................. TGCGGGGTCGCGCTCCTGCTCGCCACGCAGGA 15181 29 100.0 33 ............................. ACGACGCGGGCGCCGGCAGCGGCCGACGTCCGC 15119 29 96.6 32 ............................C CGTGCGGGGGCGGTGCGCGGTCCTCCTCAGGG 15058 29 100.0 32 ............................. TTCGGCCGCACCGGGCTCCGAGGTCTGCCGAC 14997 29 100.0 32 ............................. GCAGGACTCGGCTGGAACATCCTCCGGGGCGT 14936 29 100.0 32 ............................. CAGTGGGGAACGAGCGTCGCGACCATCACTCG 14875 29 100.0 32 ............................. ACCCCAACCCCGCTCTCAAGGCAGCGGCGGAG 14814 29 100.0 32 ............................. ACCCCAACCCCGCTCTCAAGGCAGCGGCGGAG 14753 29 100.0 32 ............................. GGCATCGCCTACGCGGTGGGCATCGCCGATGA 14692 29 100.0 32 ............................. CAGAGGAACAGGGCCTTCGATCTCATCGGGCT 14631 29 100.0 32 ............................. CGTGACGAGTTCGGGCGTGGGCTGGTAGGCGA 14570 29 100.0 32 ............................. TGCGTTCGACCACCTGCCACACCGGACTGGCC 14509 29 100.0 32 ............................. CCGCGCGAATCGACGCTCGGCTCGACAGGCTG 14448 29 100.0 32 ............................. CCCACGACCTCACCAAGTCCGAACTCGTCAAC 14387 29 100.0 32 ............................. CCCTCCACGGCCGCCGAGGTGGCCACGGTCAC 14326 29 100.0 32 ............................. TGCCAGTGTCCGCCGCTCCATGGCGCGCACCA 14265 29 100.0 32 ............................. GCCGGTTGCGGCTCGGCGGCACGTAGACGAAC 14204 29 100.0 32 ............................. TGGTGGGTGCCGGCCACCATGGGCGCCGCGCA 14143 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : CACCTCGG # Right flank : GTCTCGGCGGCGTGGCGCGCACAGGCCGGACCTCCCGCACCCCCCGACGGCCGGCCGCGCATCCCCCTCCAGACCGGGGCCGGCGCCAACCCCGCCCCCGGCGCCGGGGGCGGTTCGCGACCCTCGTAAAGTGGACGGGTTGCCGCAGCTCGGGCCGCAGGTCCGGGCGGGCACGCGGTACCGAGGGAGCGAAGTCCGGTGTGAATCCGGCGCTGTCCCGCAACTGTGACGCCCGCCGACGACGGCGGGACGAGCCAGGTCGCCTCCTTCGGACACCGACGATCGCTGTCCTCGTGGGAAGGGCAGTCCGTCCGCACCGGACTCCGGACTCCCCCCTACGCCCCTGCCTGTACCTGGAACTGAGGAGTCCCGTGCGCGTGCCACGCCGCCTGCTCGCCGTCCCCCTGCTCACCGTCCTCGCCGTCTCGGGCTGCGCCTCCGGCGCCCCGGAGGAGACCGAGGCCGCCGCACCGTCCGCCGGTTTCCCGGTGACCGTCACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1260-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000043.1 Marinitenerispora sediminis strain TPS16 scaffold_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1259 29 100.0 32 ............................. GCGATGACGCAGCGCGGCCTTCTACGTCGCCA 1198 29 100.0 32 ............................. CGGATGACCTCGGCGTCCTGGGTGTCCGTCTG 1137 29 100.0 32 ............................. ATCGGGAGCAGCACGCTCATGGCGAGGGTCTG 1076 29 100.0 32 ............................. CGCCGCACCGCCCCGCGCAGCAACGAGCAGCT 1015 29 100.0 32 ............................. TCCTACGTCTCCTGCAGGGCTTCCTCGATCTG 954 29 100.0 33 ............................. TCGCCGGCGTGGCGGGCGAGCATGTGCGCCTCC 892 29 100.0 32 ............................. GACACACCGTGGCCGTGACGGCGGAGCTCGCG 831 29 100.0 32 ............................. TAGTCGGGGTAGTGGTCGTGGTGGATGTAGCC 770 29 100.0 32 ............................. CTTGCTCCCGCGCCCGAATAGGCGGGCGAGTT 709 29 100.0 32 ............................. TCGGGCATGGGCGCGCCCGACGCCTTGGCGTC 648 29 100.0 32 ............................. GAGCGCTACGACGACGTCGCCGACCCCGTGTA 587 29 100.0 32 ............................. GTCTCTCACGTCAGCGCTCCAGTCAGCGTTGG 526 29 100.0 32 ............................. GCACGACCCGGCGCGGCTACGCCGCCCGGCAG 465 29 100.0 32 ............................. GTCAACTGCTGCAAGTTGTTGCCCGCGTTGTG 404 29 100.0 32 ............................. TTGTGCGGGATTTTCATGGGGGGCCTGGGGGA 343 29 100.0 32 ............................. GGGCATGTCGCCCGTTCGGGCCCACTCTTGGA 282 29 100.0 32 ............................. TCCGCGGCGGCGCGCCTCGTCCTCGGTCATCT 221 29 100.0 32 ............................. ATCCGGTTGTGGATCACCACTCGGGATCTCGT 160 29 100.0 32 ............................. CCGTACCTCAGGGAGACGGCGCCCCTGATCGT 99 29 96.6 32 ............................T GCCCCGGCGGTTTCCTGATCGAGGTGCGTGAC 38 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.7 32 GCCCGCCCCACGCACGTGGGGGTGACCCG # Left flank : CCGTCCGCCGCTGCCGCGACAAGCGCCACCCGCCGTCCTACCCGGCGGTCGCCTCGGAGCTCATCACCCCCGACGAGCAGCACTACCTCAACGCAGGAACCCGAGAGTGCCTCACGGTATGCGTGGTCCGCGGGCGCCACGGCAACCGAGTGGAGAGCGAACACGTTCTTGAGACCCTCGCAGACCTCCCCCGAGACGACCGGGCCCGGGTCCTGGACGACATCCTCGACGGGTTGGCGGAGGGGGTGGCGGTTGCTTAGATAGGGGCGGCGATCGCGGTCACCGCCACGCTTGCGAGGTGTCCCGTCAGCGCCGTCCCACACTGGCCACCGAGGGAGGGACCGTGTGACCTGTGGTTGCCACGGACCGGCGGCCGCCATAGCTGGCGATGGTACGGCGTGCGATCACGTTCTGTGAGCGGATCGTTACGCAAATCTCTCGCGCGGACGGAAAACAGGTAAAGAAATGATAACGCGCCACGTCGCCCCAGGTCACAAAGT # Right flank : TCAGCCACCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 281-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000418.1 Marinitenerispora sediminis strain TPS16 scaffold_421, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 280 29 100.0 32 ............................. CGGCGCCTGTGGCCGCTCATGCGCGATGGCCA 219 29 100.0 32 ............................. CACGTCAGCGGCGCGCTCCACCTCGGCAGCGG 158 29 100.0 32 ............................. TCCCGCATCTCCTGGACCCCCTGCAGCAGCGC 97 29 100.0 32 ............................. GACTTCTCGACGGGCGGCCCCGACGGCGGCCT 36 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : CACCTCGG # Right flank : GACCGCGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3-214 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000437.1 Marinitenerispora sediminis strain TPS16 scaffold_440, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. GACTTCTCGACGGGCGGCCCCGACGGCGGCCT 64 29 100.0 32 ............................. ACCGCGTCGCGCCATCAGGCCGCCACCTCGGC 125 29 100.0 32 ............................. CGGCGCCTGTGGCCGCTCATGCGCGATGGCCA 186 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : GCC # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 176-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000436.1 Marinitenerispora sediminis strain TPS16 scaffold_439, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 175 29 100.0 32 ............................. AGATGATCAGCCCTCTGATTCAGGTCGACCAC 114 29 100.0 32 ............................. TCCAGGGCGGGCTGGATGCGGTGCTGGGCGAG 53 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GCCCGCCCCACGCACGTGGGGGTGACCCG # Left flank : GTGGGGGTGACCCGTCCAGGGCGGGCTGGATGCGGTGCTGGGCGA # Right flank : GAGATGATCAGCCCTCTGATTCAGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 2438-2647 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000061.1 Marinitenerispora sediminis strain TPS16 scaffold_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2438 28 96.4 33 .........................C.. GGTCCGCCAGCAGAAAGAGATCGCCGCTGTCTT 2499 28 96.4 33 ................C........... GTACTTCAACTTCCAGATCGATGACATCGACCC 2560 28 100.0 33 ............................ TTGACGCGGCAGTATCTTGACGCACCATCACAC 2621 27 75.0 0 .T...-.....C.......A....TGG. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.0 33 GCCCGCCCCACGCACGTGGGGGTGAACC # Left flank : TACTCCCACGAATGGGACTCGCCTGAGCGGCCGGCCGAGCTGGGCGCCTACGTCGCGGCCGACCTGCTGCGCAAAGGGGCGAGAGGGATCATCGACGGCATCCCGCACTGAGCGAGGAACTGTCAGCACCAGGCGGTACCGTCACCCCGCAACCACCCCCCAAGGAGGGGCCATGGACTTCATCGCCGCCTACCTGGCCGAGCACCTGTCTCCCAGCCAGCTCCGCGAGCTGGCCGATGACCTCGACAATGTGGAGCGGCGCGCATGGCTCACCCGGTGCCTGCCAAATGCGGCCGACGACGCTGCCCGACACGCTGACACCCGCCGGAGCATCCGCGCGGCACGGGACGGCCTGACCGCAGCCGAGATCAGCGAGCGGCGGCGAGCTGCGCGGCGACACGCCCGTCCGGGCGGGATCCTCGGGGCCGTGATCGCGGCCGAGGAATCCCGCATCAGTCGCCTCGCGGAGTACGACGGCCGGCCCTACCGGGCGACCGCCG # Right flank : CCGTTCGTGCCTACGCTCGGCCCACCGTCAGCGGAGGCCGCGCATCCGCAGCACCCTGAGTGCCACCATCAGGTCCAGCCGCAGGTTGGGGTCGGTCGTGAACGGGCCCAGCATTCGTTCCAGTTTGCCGATGCGGTACCGCAGGGTGTTGTAGTGGAAGTGCAGCACCCGCGCCGTCTCCGCCACGTTGAGGTTGTTGTCCAGCAGTGCCTCCAGCGTGCCGCGCAGGTCTGCGGCCTCCGCGTCGTTGGGGGCCGCGAGGGCGCCGAGGGTCTCCTCGGTGAAGGAGCGGAGTTCGGCGCCGTCTGGGACGAGGCTGATCAGCCGGTAGACGCCCAGGTCGTCGAAGTCCGCGACGGCGCCCACGCCGTGGATCTGGCGGCCGACGCGGGCCGCCTGCTTGGCCTGCTCGTAGGCGGCCGGGATGTCCTCCGGCCGGGCGACCACCCGGCTGACGCCGGTGGCGAACGGGCGTCGGCCGCCGCCGCCGTCGCCGGAGA # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 87% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6098-6797 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000063.1 Marinitenerispora sediminis strain TPS16 scaffold_62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6098 29 100.0 32 ............................. CCGCGGTACTTCGACCAGATGTGCAGCACGAA 6159 29 100.0 32 ............................. CCGTCCTCGTCGCCTTGATCTTCTGCTGGAGG 6220 29 100.0 32 ............................. TCCACCCGTTCCTTCCACGTGAACACGAACGG 6281 29 100.0 31 ............................. CGGCTGCTGCGGGCGGTGGCGGGGAGTCCCC 6341 29 100.0 32 ............................. TGCGGCCGACCAGCTCGGGGAAGACCCGGCCG 6402 29 100.0 32 ............................. CAGGTGGTGAGCACGCACCGGATGGTGTAGGT 6463 29 100.0 33 ............................. ATGTCCTCGACCCGGACCGGGGCAGGGGCCGGC 6525 29 100.0 32 ............................. GAGAACTGACCCATGGCAGGACGCGACGGCTT 6586 29 100.0 32 ............................. GCGGCTCGGGACGTTCGTCCCGGGCCGGTTCC 6647 29 100.0 32 ............................. CCACAGGTGGTGGCTCATGGTCGGATTCCCTT 6708 29 100.0 32 ............................. GGCACGACTGCCCGCGATGCGAGCAGCCCGCC 6769 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTCCGCCCCACACGCGTGGGGATGAACCG # Left flank : CCCACAGCGCGTGACGGTTAGGGAAATGCCGGTACACCGTCCCGACTCCCACGCCGGCGAGCCGGGCGATGGCGTTGAGTTGCAGCGAGTCGTCACCGGCGGCCAGCTGTTCTCGGGCGACCTGCAACACCCGGGCACGGTTACGCGCGGCGTCCGCCCGCAACGCCGGCCCCTGCCTGCCTTTCGGTGTCACGGGGCCAGCTTAAGGGGCCCTCCGGTCGTGGCTCGGTGACCGTCCTCGTGGATCAGGCGATCCATGGCCGTGGAGATGCGAGTGCCCGACAAACCGCCGACGCAGGATGGCAGGGCAGCTCCGCCCTCCATCCACGCCCCGCCCCATCGGGCTCGCCCGAGGCATCACCTCAGCAGCACGACGGCTCCTGTCGGATGGACATGACTGCGATGACGTAGGGTAGTGAAGCGGTTCCAAAGTCCTTTGCGACGGGATGGAATACGGTCGCGTTTTGGTAACGGACGCGCTCCATCGCAGGTCGCAAAGT # Right flank : CCCGCGGCGACCGCCGGTCATCCACAGGTCTGCGGTCGGCCTGGCGCCGACGCCAGCGGGCGGCATCCGGGGAGGACCATGGGCCGCTGCGCGCGGCCGCACCCCGCAGGGGGCACAGCAGGGGCCCCGCCCATCGGGCGGGGCTCCGTTTGTGATCTGCAAACCGGATCAGCGCCCGGAGTGGAGCGGGGCGCCGCCGGCGCCCTACCGGGCCTGGCGCTCCCGGGCCCGCTCCTCGGCGGCCTCCCGGACGCGGCCGGGTGGGGACACTTCTGCGCCGTGCGGCCGTCGGTGCGTAGCGTGGTGCTCCCCTTGATGGTCGGAGGTCCTGTCATGGACAAGGAGTTCTTTCGGCTCTATGCCTTGGCCGCGGCCGGGATGCTCGTCGTGCTCTTCCTCGTGTTTGCGGTCATGGAGGAGACCGGGCCGTGGCCCTTCGTCCTGCTTCTGGTCGTCCTCGGGATCGCCGCGGCCGCCGAATCAAGAGGGAAGAGGAAAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 2397-3805 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000007.1 Marinitenerispora sediminis strain TPS16 scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2397 37 100.0 36 ..................................... TCGCAGGCCAACAGCGGTCCCGGACTGTCCGACCAG 2470 37 100.0 36 ..................................... CCATCAGGAACTCGCGGCTCTCCTTGCGAGCACTCG 2543 37 100.0 35 ..................................... CACCAGGGAGAAGTCGGTGTAGTGCGCGTTGAGGG 2615 37 97.3 35 ....................T................ GCCGGCGGGGCCAGGTGGACCGGACGGCCCCGGCG 2687 37 100.0 36 ..................................... ACTGCTCGATCTGGTTGGTTGCCGTCCGGCACCCGA 2760 37 100.0 35 ..................................... TCAAGAAGCAGCGACCGTGCGGGCTTCCACGCGAC 2832 37 100.0 34 ..................................... AGGTCCGTGCGGCGCAGCAGCGGCGGAGGAACCG 2903 37 100.0 35 ..................................... CAGCACCATCTCGCGGAACTCCCCGTCCGTGACGG 2975 37 100.0 35 ..................................... CCCGGCCCGAACTGCCGGCCGGGTGGAGCGCCGAG 3047 37 100.0 35 ..................................... ACTTCGAGCAGCGCCTCAACGCGGCCCGTGCGGGC 3119 37 100.0 35 ..................................... GCTGGCGCGGTGGATGGCGGCCTCGACGTCGGCGG 3191 37 100.0 35 ..................................... GAGGCCGAGGCGGGCTACCGGCTGTCGGGGGAGCA 3263 37 97.3 35 ...............G..................... GGGCTGACGAAAGGGCTGGAGGTGGACACCGGGGG 3335 37 94.6 36 ........T......G..................... ACGAACTGCGTGATGGACTGCCCGAGGATGTGCAGG 3408 37 100.0 35 ..................................... CTGCACACGCGAGGTGTGGCGCTGGTCCACGAACT 3480 37 100.0 35 ..................................... GGCGCTCTCACCCTGCGCGGCCCCGACTGGCCCGT 3552 37 100.0 36 ..................................... GGCCTCACTATCTGCGCGATCATGATGATGCTCGGC 3625 37 97.3 37 ..............T...................... CTGGACCTCGCCGACCTCGCACCAGTCGAGGGCGGAG 3699 37 97.3 34 ..............T...................... CGCAAGCCCTGTTCGGTGAGGCCGATCTCGTCGG 3770 36 78.4 0 ......A...T...T...A.AC........-.C.... | ========== ====== ====== ====== ===================================== ===================================== ================== 20 37 98.1 35 GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Left flank : AAGCTCCAGTCGGCGGGCTGGCGAACCATGCCGAATTCCGGTCCACCGGTAGGTGCAGGAGCGGACGCTGTCGGCCCCGCCCAGCGGTTGTACGCGGCGTTGCGCTCGCACGGCGTGCACCGGATCTATGGAGCGGTGCACGTGTCGGTGTCGGTGCTGTCGCTGCCGAGCGGGATTACGGTGTGGTGCCGGAGCGGGGTCTTCGAGTGGAGTAGCGTCGGCGGCGGTAGGACGGTGGTTCCGGCGGCGGATGTTCAGGAGGTGGTGCGTTTGCTGTTGGCGACGCTGCACACGTGAGGGCGTGGAGTGTATGTCGGCGGTTAAGGGTTTCGCGTCTTTCAAGGAAGTATGGAAAGGTCTGGGTTGGATGCTTGGGGACCTCTAGTGGTCAGAAAATCCCCGGGAGGTTCTTAAGCATGAATTGGGCACAGGGGTATGAAATTCCCCGTCTTGCAGCTCGGCGAATGGGTTCGTGCTCACGAAACCGCTGGTCGAGTGCC # Right flank : CCTGCCTTACACCGGGCCTGCCCACCTGCTCTATAGCACAGCACTCCTCGCAAGAATGGTGAATTGGGAAAACCACTTCTCAGTTGTCCATTTCAGGTCACGCTGGTTCCGTGTGGCTCTGATTGTCTCTGGGGTGTCTTACCTTTCCTTCCGGTGCTCGGGAGGAGGGGAGATGGTGGGAGAACTTGTCGCGCACAGCCCGAACAGCGACGGGCAATGGCATTCGCTTCGTGATCACCTTCGTGGAACGGGGGATTTGGCATACGAATATGCGAAAGCGTTCCAGTCGGGCGATTTGGGGCGTTTTCTTGGTCTGGCGCACGATGTCGGCAAAGGAAAGCCAGTCTGGCAGGACGGTCTGGTATGCGTGGCTGGTGCCGATCGGCCGGTTGGTGTTCCCCACAAGCACGAGGGAACGTGGTGGGCGGCTCGCCATGCCGGGGTGTGGTCGGCCGTGGTGCTGGGGCACCACGGCGGGTTGCCGGACCGGCAGGACCTCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 11798-13711 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIO01000007.1 Marinitenerispora sediminis strain TPS16 scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 11798 37 97.3 35 .......T............................. TGCTCCCCAGCGTCGCCGCAAGGACCGGCGCCAGG 11870 37 97.3 36 .......T............................. GGCTCGGCGACCGGCGGCTGCGGCCCGGCGACGAGG 11943 37 97.3 35 .......T............................. GCCTCCTGCCGCAGAGGTCGAGGGGGCTCGGACCG 12015 37 97.3 35 .......T............................. ACCGAGCGACTCGCGGCGGCCGAACAGGCAGCGGC 12087 37 97.3 35 .......T............................. CGACGCTTGGAGTTCGAGCTCGCGGGCCTCCCGGG 12159 37 97.3 37 .......T............................. CCCGGGATCTCAGGTCCGCGTAAACGGTGTCACGGGC 12233 37 97.3 34 .......T............................. GAGCAACAGGCCGGCTACCGGCTGTCGGGGGAGC 12304 37 97.3 35 .......T............................. GTTGCCGGCGGTCGGCCACAGCTCGATCGTGGCGG 12376 37 97.3 34 .......T............................. GGCCGGATGCAGTACCAGGACGACCGGGTCTGAG 12447 37 97.3 35 .......T............................. TCCGTCATGATGTCCACGATCTTGACCGTCTCCCG 12519 37 100.0 35 ..................................... TTGGGCTCGACCAGCCGGGAGCGGGTGCGAGGGTC 12591 37 100.0 36 ..................................... GGTGAACGCACACTCACGTCTCTGACCTACGCCGAC 12664 37 100.0 35 ..................................... GCGTCAAGAAACCCTGACAAGCGAGAGGAGTCGAT 12736 37 100.0 35 ..................................... GTGACGCCCTGGTGGCGCTGATTGAAGAGCTCAAT 12808 37 100.0 37 ..................................... GGCCCCTCGACGTGCCACGCCTCGCCGGCGCGAACGA 12882 37 100.0 35 ..................................... AGGGCTCCTCGTCTCGGTCATCTGCGCCCTGGCCG 12954 37 100.0 35 ..................................... GATCGAGGTCTACCTGGACGACGAGCTGGTGGAGT 13026 37 100.0 35 ..................................... CTCGGGGCTCATGCCTTCGGCCGTGGCCTGGGTGT 13098 37 100.0 35 ..................................... CCACCTCGTGCCCTGGTGACGTGCTGCGCGGCATG 13170 37 100.0 38 ..................................... GACTGTTCCAGCCTCATGCAGTACGCGTGGTGGCAGCA 13245 37 100.0 35 ..................................... TCGACTGACAGCCTCTCTGTCGCCGAGCAGGCGTA 13317 37 100.0 35 ..................................... TTGGAACCAGCACATCGACGCACTGTCGATATGCG 13389 37 100.0 34 ..................................... GCTGGATAGCCGGCACGGCATCGCCATGGTGCGT 13460 37 100.0 34 ..................................... GCCCCTCCTTCCGGAGCCGGTCGTAGGCATCCCG 13531 37 100.0 35 ..................................... GTCATCGACCACACGGCGTGGAGCGACGGCGACCG 13603 37 100.0 36 ..................................... CCGGAGAGCCACCCCGGCTACGACGAGGACGCTCCG 13676 36 86.5 0 .G............T.-...A............T... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 98.5 35 GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Left flank : TCCTCGCCCGCCATCTGCGCGGGGAACTCTCCGACTACCTTCCTTGGATTCCGGCGTGATGCAGCTGCTTCTCCTCACCTATGACGTCAACACCACCACACCCGAAGGGCGGCGCCGGCTCCGGACGGTGGCCCAGATCTGCGAAGGGTATGGCCGGCGTGTTCAAAAGTCGGTCTTCGAGATCATCAGCGACGAGCCTGGGGTGTTGACGTTGATCGACCGCATCGGCCGCGTGATCGACGACGAGGCCGACAGCATCCGCGTTTACCGGCTTCCGCCTGACGGATTCACGGTGGTGCGCACCCTCGGGGCCGCCCGGGCGGTTGGGCACAACGACGCGATCATCATCTGATGAACGCCTTGGCCTCTGCTTGGGGACCTGAAGTGAGCAGAGAATCCCGGGGAGGTTCCCAAGCGAAAAACGGACGAAAGGGTTCGAATGGAAGCCGTGAGAACATGGGGCGCGCCTCAGCGTGGCGCATCTCCCCTGTTCAGGCGGC # Right flank : CGTTCCGTGGTCAGGGTTCTGGTAGACGTCGGCGTGTGGCAGCCGCCCTTCGGGGATCACTTGCGATTGCGGCCTTTCGTCCTAAACACACGGGGCCCGTCGGACGCGTGCAGGTCAGGACGACTGGTGTGCAGTGACGACTGCTTCAAGAATGTGATCCGATGATGCGGGCCAACGCCTCACGACGCAGGCGTTCGTGTGCATCGCGCGCCGAACTCAACAACCGCAGGACTTGGCGTCGGTCGTCGTCCTGTGCTTCCGCGTACAAGACCGCCGCGCGCTGGAAGGCATGCATCGCCTCAAACATTTGCTGCACCTCGCGGAGTGTGAGGCCGAGGTTACTCCACGCCCCCGCTTCGCGATGAAGGTCGCCGATTTGTTGGTAGAGGTCGCGGGCGCGTTCGTGGACAGTGATGGCTTCGTCGTAGTGGTGGACGGAGCGGGGTGTGAGGCCGAGGTTGTTCCATGCGTCGGCCTCGCTGTGGCAGTCATCGATTTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //