Array 1 368874-368024 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEMJ01000004.1 Escherichia coli strain KCRI-30 isolate RDK37_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 368873 28 100.0 32 ............................ ATTTGAGCGACGTAGCGGAAAATACGATCGCC 368813 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 368753 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 368692 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 368632 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 368572 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 368512 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 368451 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 368391 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 368331 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 368271 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 368210 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 368150 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 368051 27 85.7 0 ...G...A...............C-... | T [368032] ========== ====== ====== ====== ============================ ======================================================================= ================== 14 28 99.0 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 379222-377932 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEMJ01000004.1 Escherichia coli strain KCRI-30 isolate RDK37_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 379221 28 100.0 32 ............................ AGACGTCAAGAACGGTAACCCGGTTGAAGTCT 379161 28 100.0 32 ............................ ACTGCCCCGACTGCGGGCCGGTGTGCGGCGAC 379101 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 379041 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 378981 28 100.0 32 ............................ TTCCCTGCCGGTTCTCTGTATCCATGAATATC 378921 28 100.0 32 ............................ CAGATATCGTGCCGCACCGATCGTGACGAGCA 378861 28 100.0 32 ............................ ATACCGCCATCAAGTGTAATGCCCTGATCCAT 378801 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 378741 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 378681 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 378621 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 378561 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 378501 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 378441 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 378381 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 378321 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 378261 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 378201 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 378141 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 378081 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 378021 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 377961 28 85.7 0 ....................T...C.CT | C,A [377935,377938] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //