Array 1 46042-48110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZMK010000014.1 Photorhabdus sp. UCH-936 S2_R1_(paired)_trimmed_(paired)_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46042 28 100.0 32 ............................ GATCGGGGTAGCAATAATGGTTAAAGTACCAA 46102 28 100.0 32 ............................ ATACGACTACTATGCAACAAGCATGATCCCGG 46162 28 100.0 32 ............................ TGCTCCGTCGTTGCTAACTTTTGTTGCCATTG 46222 28 100.0 32 ............................ GACACTTGCATCAGATGTGCTGTTAATACGCA 46282 28 100.0 32 ............................ GAATTGGACAAATTAGAAACCCTGACTATTAC 46342 28 100.0 32 ............................ GGTATCTGTATTTCAGCCTGGTGAAAAAACAT 46402 28 100.0 32 ............................ ATCTAGCACGGACAGAAAAGCTGCAATCTGTT 46462 28 100.0 32 ............................ TGTTACGGGCAAAAAGCACTATTCAGGAGAGT 46522 28 100.0 32 ............................ GATGATAATGGAAATGAATTCGATGAGTTTTA 46582 28 100.0 32 ............................ GTTACCTTTAGATTCGGGTAATGAGGCATAGT 46642 28 100.0 33 ............................ AGCTATTTTGCGTGGCTCTTAAAACAACCCTGA 46703 28 100.0 32 ............................ TTCAATAGTCATTTGCGATATACTGTCCAATC 46763 28 100.0 32 ............................ TTGATGCAATTCACTGCCAAGAACGGAGTAGT 46823 28 100.0 32 ............................ ATCCTGATCAATTGGCATGGCCAGGTCATCCC 46883 28 96.4 32 .....................G...... TGCAATGCATTAGTTATCATTCAAACTGCGGT 46943 28 100.0 32 ............................ GATTTTATGTGCCGTATGACACGGTATATAGT 47003 28 100.0 32 ............................ GCTTGGATGATGCAGCCAGCCCCAGATTGGAA 47063 28 100.0 32 ............................ ATATCCGCGCCGGGCAAAGGTACGCAGTCAGA 47123 28 100.0 32 ............................ ACAATTATACAACATCCTTTAGAACAAACCTG 47183 28 100.0 32 ............................ TCCTCCATTACGCCTGAGTTGGAATCATTAAA 47243 28 100.0 32 ............................ AATAAATAATGTAGTGTTAATTGGGATAATGA 47303 28 100.0 32 ............................ TTCAACATCCAGCAGAGACAAGGGCCGTATTG 47363 28 100.0 32 ............................ TTCACCAGCAACCCAAGATGATATATCACGCC 47423 28 100.0 32 ............................ CTTCCGTGGCGGTATCGTTGAGCAGATGGGTT 47483 28 100.0 32 ............................ AAAAACCAAGGCGCAAGCATCAAGTAAAAAAG 47543 28 100.0 32 ............................ ATGATTCATGCCGAAAGAATAACCCAAGAACA 47603 28 100.0 32 ............................ TATTAAAAGCATTATTAAATGTAGAAAACCAG 47663 28 100.0 32 ............................ TGCATGATATTGTCCTTTGTGATATCTATTAC 47723 28 100.0 32 ............................ AACCCTAACTCATCACACTCGGCAATCCACAT 47783 28 100.0 32 ............................ GTATGGGCTTTGCAAGTCGGGCGATTCACGAT 47843 28 100.0 32 ............................ TATACGGACAATAAAATCACTGACAACAATAA 47903 28 100.0 32 ............................ ACAACTCTATAACTTCTCTCTTTTCTTTCATC 47963 28 100.0 32 ............................ AATGACCGATCGCTCCCTGAGTTTTACCTAGC 48023 28 100.0 32 ............................ AATGCGTTTGTTAATAGCACGGATAGCCATTT 48083 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCAGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGGCTCGAAAAATAATATTTTCCAGCTTGTAATTATTTGGTTTTTAATCAGTGGATGAAGGGATCTTGGCACCAGTATCTAATACAAACTTAAGGCATTGGGTGAGAAACGGTGCCCGGGTTCCAAGTGTTCAAATAATGTTTGAGTTGGACATTTAGTTGAGTGTACTTTTCTAGACTTCTTATAAAATCTATTTTTACAGTTATTACAATATTTTAAGGAAAATTTAGTTGTTCTTATAGCGGCTAAATTTTGCCGGAATCTACATTTTTATTGCTATAAGATATGGTGCTTTTGCTGTACCTCAGTTTTGACCCTTTTTTATCATCAAAAAATAACATATTGATTTAAAATAAAAATAAAATATCTCCTGAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTGACAGTCAGCAACTTAAAGTTAATATGTAACTT # Right flank : AATCAGTTTTCCAGTCTCACTGCTATCCTTCTGGTGCACTGCCTTAGGTTGTTTAGGTATAAATGGTGGTTAATTGCGTAGTCTTGGGGCCAATAGTTGATGGCGGATGGATTCTGCCAGCTCATCTAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCAGCCAGATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTTTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTCTTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCCGTACCCGGTAGTTGAAGTCATTTTTTGCTTTAAATTGCAAACGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 51689-52858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZMK010000014.1 Photorhabdus sp. UCH-936 S2_R1_(paired)_trimmed_(paired)_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51689 28 100.0 33 ............................ CCGCTTCAATAATGATTTCTGGCTCAAACGTGG 51750 28 100.0 32 ............................ ATTAGGCACTCAGAGTCCCAAGAACACACAAC 51810 28 96.4 32 A........................... TTGTACTGTTCGCAGATGTACATAGTAGTTTT 51870 28 100.0 32 ............................ TATTCCCCAGAGATTCTGTGATGCGTTTTTAT 51930 28 100.0 32 ............................ ATTCCGTGAGTGTTGAGGGTTTTAATAAAGTG 51990 28 100.0 32 ............................ TTCACAAGATAATCTGGAATTTCAGAAATAAA 52050 28 100.0 32 ............................ AGGCACATCAGCAATGGCATATTGCAGTTCTG 52110 28 100.0 32 ............................ ATGTCGGAACGACATGGCGACCTTAGCGCCCG 52170 28 100.0 32 ............................ TGGTGAGACTCATCGAGCTTTATCTGATGTGC 52230 28 100.0 32 ............................ GGAAATGGTGGTTGAGGCTCCCGCTCTTTCTG 52290 28 100.0 32 ............................ GATAATATGGCCGGGTAACGGGATCTGCCCTT 52350 28 100.0 32 ............................ AGTAATCAATACAGCCGCACTACGCGGTTTTT 52410 28 100.0 32 ............................ AACAGAGTGCCGATATTGTGACGGACGCGTAA 52470 28 100.0 32 ............................ TGAATGATTTTACTGCATCGGCTTACTGTCGG 52530 28 100.0 32 ............................ CACGGAAAATTTTAATATACGTCACTGAAGTT 52590 28 100.0 32 ............................ ACGAACCGCACACGCGACCAGGATCTACTCCT 52650 28 100.0 32 ............................ GTTTGGTATATTCATCCCATTTAATGAACCAA 52710 28 100.0 32 ............................ GGATCGACACCCCGGCTATCATCCCATCCCCG 52770 28 92.9 33 ....................T...A... TAGAAAGTTTCCCTTATTCTCCTAAACTATCAA 52831 28 71.4 0 ...TG.....AC....AT........GT | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.0 32 GTGAACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATATGAAAAATGTGGGATAGTAAAAAGCGTAATGAATTATTTAAAGGGATTCGAGTTTTATTTGTAGGGCAATAATATTACATTTATTACTTTAATCCAGAGTCATTTAATTCTATTTTTATATAGTAATTATACAAGAAGAGAGTGAAATATGATGTATTCAGTTAAAGGTGTTCAATAACACACGTTGGTAAATGCACTTAAAAATATTAGGTCAGCATATTCTAAATAGAGTGAGAGTAAAGTTTATCTTATTTGATAGCTCTATCATGGCTGAACGTTTTGCGATCAATGCTTTCACTTACTGCATAGACATTAGAACGGGTGATTTAAGTGTGTGATGGTGTTTTTGTTAAACCCTATTTTTACCCTTTTTTTGAGGGGAATTATAACTGGTTGATTTTATAGTAAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAACAGCTATGCTATTTAAAAATCATCAGGTTAAAGTTAATATGTAACAGT # Right flank : TATAATTATTCCTGTTTAGGGCAGGCACTATGCTATGAGTTGGTAAAGAATTGTAAATTCTTTTGATTTACATCTGTGATATTTTACTTGTGTAAAATTTATGCATAATATTTACCATAAATGAAATTAATTATTTAGGTAATTCTTAAATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTTAATGGTGGCCGTGTTGAATATGTCACTGATGAAGGAAAGCAATCACTGTATTGGAATATCCCAATTGCAAATACCACTGTTATTATGTTGGGAACGGGGACTTCTATTACTCAGGCAGCAATGCGTGAATTCGCTAAGGCGGGTGTTTTAATCGGTTTTTGTGGTGGTGGAGGTACACCGCTATTTGCGGCTAATGAGGTTGAGATTGATGTGTCTTGGTTGACACCACAAAGCGAATATCGTCCTACAGAGTAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 64339-67005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZMK010000014.1 Photorhabdus sp. UCH-936 S2_R1_(paired)_trimmed_(paired)_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 64339 28 100.0 33 ............................ AACAAAAAAAGGCCGTGACAGAATCGCGTCATT 64400 28 100.0 32 ............................ ATTCCCGCCCAAACATTGGAACGCTGGATATC 64460 28 100.0 32 ............................ GAAGCAACCAGTCCGATTAGCGGCATACTGGC 64520 28 100.0 31 ............................ GTTGCAACCAGAGCACTTTTGCTTCGATATC 64579 28 100.0 32 ............................ TGTACGGCAGTGCACGTGTTATCCTTCGTAAC 64639 28 100.0 32 ............................ TGAATCAGCATATAAACCGCAGCACCCGCACC 64699 28 100.0 32 ............................ GCTGGACTATTTCTGAATTCAAAGATCTACCT 64759 28 100.0 32 ............................ ATATGCGGGATTTGCTATGTAATTTATTCCAT 64819 28 100.0 32 ............................ TTGGTCAGAGAGGGCACAAGATTGAGCGCTAT 64879 28 100.0 32 ............................ CCCAATCTTTCGAAAGTTACTCTGGATTTTAA 64939 28 100.0 32 ............................ AATACAGGCTTTTTGCTTCGTCGCGGGGATCA 64999 28 100.0 32 ............................ AACGATACCAATGCCTCCGAATAACTCATGAT 65059 28 100.0 32 ............................ TCAAGGATATCGCTAAACACGGAACATCGGAT 65119 28 100.0 32 ............................ GTTGCACGTAAAATAACCGGGGGGCGTGTACC 65179 28 100.0 32 ............................ ACACACGCGGCCCATATCAACACCCCGGCTAT 65239 28 100.0 32 ............................ GCAATCAACCGAAGTACTGACAGCGAGAAATA 65299 28 100.0 32 ............................ TGCTGGATAAGCCAGTATCGTGGGAAAAACGA 65359 28 100.0 30 ............................ CGCACTGGCCGCTAACGCATTAGCGACATT 65417 28 100.0 32 ............................ GCAATAAAATCACGAATGCACTGTGGGCCACA 65477 28 100.0 32 ............................ GCGCAAATTCAGCTTTATTGCCGTGGAAATTT 65537 28 100.0 32 ............................ ATCGTCATCGGGCCAGAGATAATTCACACCAT 65597 28 100.0 32 ............................ AGTATTTCCCAGCCCTTTGCGAGAGTCAATTC 65657 28 100.0 32 ............................ ATTGATTGGCGAAAAATCATAATAGCTACTAC 65717 28 100.0 32 ............................ ACGGCGATTAGCTCGCAAGGATGGAGTTAGTT 65777 28 100.0 32 ............................ ACACGCCAAACATGGGACGGGCCGGGGCAATA 65837 28 100.0 32 ............................ TTAAAAAGGTTCCATAAAAAGCCAGTAGCGAA 65897 28 100.0 32 ............................ GCGATATTTATGAGATGGTGGCAAATCAGGGA 65957 28 100.0 32 ............................ CTACGCCATCAATATCGGAATACAAGCGTAGC 66017 28 100.0 32 ............................ AGGGGCGATTATCACAAGACAGAACCCGCCAT 66077 28 100.0 32 ............................ TTGCCGGCTGGCCCGTATGATATGAGATAATT 66137 28 100.0 33 ............................ TGAAAACAGCAACCTCCGTTTGACCGCTTCGGA 66198 28 96.4 32 ...............A............ TCTTTGATCCGTTGTGACCAGTCACAATGAAT 66258 28 100.0 32 ............................ GTATGAGACAGAAAATAAACACGTAAATCGTC 66318 28 100.0 32 ............................ TTTACTAGCCAGGGATAACATGAGATTAAAAG 66378 28 100.0 32 ............................ TCTTTTTCGCGGACAGAATAACCAATTGTATC 66438 28 100.0 32 ............................ ATAGCCTGGTTATTACGGTGAACAAAGCCCAA 66498 28 100.0 32 ............................ AAGAATAGCAATGACAACAAACTCAACGATAC 66558 28 100.0 32 ............................ TCAGCTGCTCGACCGTCTGATGCCCTGTAGTT 66618 28 100.0 32 ............................ TTCACCACGCGCTATCGATAAATTAGCATTAC 66678 28 100.0 32 ............................ ATAGTCGCGCGATAGACTCTATGTCTGTAAAT 66738 28 100.0 32 ............................ AAACCGCTTCGGTGATATCGGATGGATCTCCC 66798 28 100.0 32 ............................ GTGATTCAATTCATAATCAACAGGCTTCGGAA 66858 28 100.0 32 ............................ ATTCGAGTAGAGCGGCTTTATCTGCATCAGTC 66918 28 100.0 32 ............................ AGTAAAATGTAAGATATCCCTGATTATCACGA 66978 28 82.1 0 .....................GGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GACTAAAAAAGCAGTTTCAGAGAGGTTTACTTCTGTAGCAATTGATAATAGCGCTTCATCTGGAAGCCAGTTATCTAATATAACAACAGCGGCGGGGTTGCCAGAAAATTGGCGATCTGTAAATGCATCAACATGATAGATGGGTAGTGAAATCATTTGCATTTCTCTTAAAATAGAATTGGTCATGAAAAAGGGATCAATGTTCTTAATTTTATTAAAAAATTACCCGCTATTTTATATAACTATATGTAATCGGAAAGAGAGTAAGTCGCTCAGTTTTAAGATATTTAGTTGGTTTACCGAAACATTGGGTATCGTTGTATTAACCAGATATGTGACCCTATTTTGACCCTATTTTGACCCTATTTTGACCCTTTTTTTGTGGTTGATTTTAACTTATTGATTTTTATATGATATTATATAATGCTTATAAAAAGGGTTTTTCTGCTTTTTGTCATTATGTTCTTTAATAATCAGTAAATTAAAGTTAGTATCTAACA # Right flank : CTCGATTGAGTGCGCTAAAATAAAAAGCCTATTTTCTGCCTGATGAGCATTAATTCTTATGCTTTTGAGCATACGTTTCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAGCCATTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCTACTGGATGATAGCCTTTGGGGACCATTACCACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACGCGTTGCATGCAGAATCCTTGAGATGGGTTCAAGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCATTAGTAAAGACTTCAACCACTAACAAGCTATCAGCAGGTTTGTTATCCGGTAGGATGTTGTGAACATGGCGTCGGTTGTAGCCATTTCCACGTTGTTCTGCACCAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //