Array 1 2943193-2940715 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079097.1 Methylococcus capsulatus strain KN2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2943192 37 100.0 34 ..................................... TCCGGCGGTCTCGGTCTCGTCGCCGGGGGCGAGG 2943121 37 100.0 34 ..................................... CGTCAGCCTGGGGTTCGACGCTGGCCGGCGCCAG 2943050 37 100.0 35 ..................................... TCTGCATCTCTTATTTCTGCTCGATATAACATATC 2942978 37 100.0 34 ..................................... CGGCGTCAACCCGCTGGACGACCTGCAGGACTGG 2942907 37 100.0 35 ..................................... GACGGCTCGGGCCGCGTCATGGCGCAGCTGGAGGT 2942835 37 100.0 36 ..................................... CTCGTCCTCGAATGAAGTGCGGCAAACCAGGATGAG 2942762 37 100.0 36 ..................................... AACGCCAGCCTGGCCGCGACCGTGCTGTAAGGAGGC 2942689 37 100.0 34 ..................................... ACCGGCGGCAACACGCTGGCGACCGATCACTTCG 2942618 37 100.0 34 ..................................... AGGGCGGCGGCCTCCAGGATCAGGGCCTTGCAGA 2942547 37 100.0 34 ..................................... CATCACCGGCACTCCAGCACGAGGCCGGCCTCGG 2942476 37 100.0 37 ..................................... TGGATGAAATGGAGATTCATAATGATTGGTTAATACT 2942402 37 100.0 36 ..................................... TATTTCTCCCGTTTTGCGTCCGGCCAATCCGTGACG 2942329 37 100.0 35 ..................................... TATGTTGGGTCGCGGAAATCTGGGAAATATAGCCG 2942257 37 100.0 35 ..................................... TTATCCGTGTGGACTTTATCAGTCTGGACAGCAGG 2942185 37 100.0 35 ..................................... CAGGCCAACCTGCAGAAGGCCGCGGAGGTGCGCAA 2942113 37 100.0 34 ..................................... GACGCACATAAGGTTGAGGGGCACCACTCGGCCA 2942042 37 100.0 35 ..................................... AATTTTTGCAGCATCTCCACTTTTGCGAGCGGCTT 2941970 37 100.0 34 ..................................... CGTGCTCGCGCGGCGCTCGGCGCCGGTCGCATCG 2941899 37 100.0 35 ..................................... CACCGCACGTCCCATGGACGGCTGCAATCGTGGTG 2941827 37 100.0 34 ..................................... GACCCGCCAGACCGGTTGCGTGGAATCGAATTCG 2941756 37 100.0 35 ..................................... TTGATTTGGCGGCTTTGGAAGCGCAAATGGCGGCG 2941684 37 100.0 33 ..................................... TTATCGCTTGGCGCTCGGGGTTTCCTCCGGCGT 2941614 37 100.0 35 ..................................... AGCCTGGCCGCGTACTGCGAGGCGCCCTGACCGGC 2941542 37 100.0 34 ..................................... TCCTGAAGGGCGTAGCGGTAGCCGCAGACCTTGC 2941471 37 100.0 36 ..................................... GCCCCATTGCCCGTGCATGAAGTCCACCTTGTCGGC 2941398 37 100.0 35 ..................................... CGCTTCGGCCTGCTCGTCGAGCAGGAACCGGAAGC 2941326 37 100.0 34 ..................................... ACAGCCCGGTAAAGATCGGCTTTCAACTGGCCGT 2941255 37 100.0 34 ..................................... TCCGCGGCCTCGCGCACCCGGTCGAGCGAGATGC 2941184 37 100.0 36 ..................................... TCTGGCGGCACGGCGAAGGCCGCGCGGTGCACATCC 2941111 37 100.0 35 ..................................... GATCCATCCGAGTATTTCATCGATTCCGCAACAGG 2941039 37 100.0 34 ..................................... GTGGCCTGGGCGGCGGCGGCCTGGATGGCCTTGA 2940968 37 100.0 35 ..................................... CGTCCACGGGTTTCATTTTAGGCCGTCGCAAATAT 2940896 37 100.0 35 ..................................... GGCCTGCTGCTTGCGCAGCGCCTTCATCTGTGACT 2940824 37 100.0 34 ..................................... GGACGCCATCCAGAAGCGCATCGCGCGCGATAAG 2940753 37 91.9 0 .........................C...G......T | TC [2940724] ========== ====== ====== ====== ===================================== ===================================== ================== 35 37 99.8 35 GTATCTCCCGGCTAAATAGCCGGGAGTGGATTGAAAC # Left flank : CATGAAATTGAACCCATGGGCTTTTCGTCATGTTGATTTTGGTTTCCTACGATGTCTCCACCGAAACCGCCGCCGGCCGCAGACGTCTGCGCCATGTGGCCAAGGTATGTCTGAATTACGGCCAGCGCGTGCAAAAGTCCGTGTTCGAATGCAAGGTCAACCTCGCCCAGATGGAAACACTCAAGGCAGAATTGCTGGATAAGATCGACGAGAAAGAGGACAGCCTGCGCATTTACCGCATCACCGAACCATTGGAGAAAAACCTCATGGAGTTCGGCAAGTTCAAGGCGGTTGACTTTGAAGACACGCTCATCGTTTGAAATGCGCGAACCTCAAGCGATGCGAATTTGGCCGGGGGTTCGCGCAACTTCCAACTGGTTGAAAAACCAGTCGATAGCGGAGTCCTCCCCGATCCGCATCACGCCGGCGGACTGGCTCGACCACCCGTCCGCTCTTCCCTTGAAAAAAATCCTAGCTTATCATCAAGCTGCGGCAACGCC # Right flank : ACGGATACGCTTGCGAAACAGGAGGAAATGAATGATGCGGAATGCGGCCAGGGTCATTCCTGTGATTCTGATCTCGGCAGTCGCCCTGCACGGCTGCGCGATCGGGTACCAATTCAACTACGCCGAAGCCGAGCCTACCATTCGGACGAACCCCAAGATCGTGGTGGCGGTCGGCTTCCAAGATCGACGCCCTGCGATCGTGAGCCAAAAGAAGCCTCCCGATTACGTGGGGGTTCTTCGGTCCTCGCTCGGCATCCCCTACAGTGTCACCACGGAGTCGGAGAGACCGATGGCGGACGACATGGCGACCGCCGTGGCGGGAGCGATCGAGCGGGACGGAGGCAAGGCGATTGCGCTATCCATTGCGCCGACTGCGTCGATGGCGGAAATCGTCCGCGATGCCAAGGTTAGAGGCGCAGGAACGTGCATGGTATTCACCCTGCGCGACTGGCAGACGGACACCTACATGAGCACGAATCTCGTCTACGACGTGGCGGTGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTAAATAGCCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.10,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 3221871-3219586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079097.1 Methylococcus capsulatus strain KN2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3221870 28 100.0 33 ............................ TTAAACAGCTGCTGGCGGGCAACTTCTGGGTCG 3221809 28 100.0 33 ............................ CATTCCGGCAGCGGTCGCAACACCCGATGGTCC 3221748 28 100.0 33 ............................ ATCGTCCCGGAGCGCCGCCGTCGCCTTCTTCTG 3221687 28 100.0 33 ............................ CTGGAACGCCGGGATCATCACGCCGAGGGTCTC 3221626 28 100.0 33 ............................ TTGCGCAGCGCCTGCTGAGTCGGGACGCTGGAG 3221565 28 100.0 32 ............................ TCCACTCCTGGATTCTCGCTACGGACTCGGAT 3221505 28 100.0 33 ............................ CCGCCGACTGGCGAAGATGCGCGCGCAGATCGA 3221444 28 100.0 33 ............................ CTCAATCAGGCTTTGCTCGGGCTCAATCAGACC 3221383 28 100.0 33 ............................ TAACCGTTCGTTTCTGTCCATTATCGTGCACTC 3221322 28 100.0 33 ............................ CCCAAAAGAGCAGCGGACAGCGCATCCGTGCTC 3221261 28 100.0 33 ............................ TGCCAGATCGATGGCGATCTTGTCAGCAGCGGC 3221200 28 100.0 33 ............................ CCTTCGTCGGCATCAATCCGCTGACGGGGACGC 3221139 28 100.0 33 ............................ TCTTCAGCTTCTCGTGTCCCCACTTTGCAGGGA 3221078 28 100.0 33 ............................ GTACGATTACCGGGCGTGCGTAGAAAAGTGGAA 3221017 28 100.0 33 ............................ CCAAGCCGATCATGCGTTGTTTTTCGCAGGCCG 3220956 28 100.0 33 ............................ TCCATCGCGGGGGCCGATACGACGAGATCATTG 3220895 28 100.0 33 ............................ ATAGTAAGCGCCATGAACCACCGAACAAAACCA 3220834 28 100.0 33 ............................ TCACAGTTCACGCGATAACCGATAAAGGAAAGA 3220773 28 100.0 33 ............................ TAAGGACGACCGTAAGCGCTTGTCACAAATTAC 3220712 28 100.0 33 ............................ CTGCCCCCACCGTTCGCCCCGTTAGCAGAGCTT 3220651 28 100.0 33 ............................ TGATGCGAGCGACAGCCATATCGTTGCCGGGAG 3220590 28 100.0 33 ............................ GTTACCGTTGAGTTCGTACACCGTCATCACGTC 3220529 28 100.0 33 ............................ TGGCCCAGCTCAAAGCCAAGCAAACCAAAGGCC 3220468 28 100.0 33 ............................ CCACCGGCATCCCGGCGAATTGGACGTCCCCCG 3220407 28 100.0 33 ............................ CCTTCGCCGTCAAGTTCTGCCACGGCGCGCTTT 3220346 28 100.0 33 ............................ CAAGGATGGCTTGATGCCGTGGCGCTGTACAAA 3220285 28 100.0 33 ............................ TCGGCATCGACCCGAGTGATCCTTATCAGGCGC 3220224 28 100.0 33 ............................ TGTAGTGGCCGGCTCGACCTATCAGGTATCCGT 3220163 28 100.0 33 ............................ TGAGGCGGTGTGGGGCGGTGATAAGGCGTCGGA 3220102 28 100.0 33 ............................ TATCCAGGCTCATCAGGTACCACATCAGCGCGC 3220041 28 100.0 33 ............................ CTAGTTACGGTGTCAACACCTAGTTTTAGGTCA 3219980 28 100.0 33 ............................ TTCCCGCCTCCGGCGTCCACCGTCAACACCGTG 3219919 28 100.0 33 ............................ GCACGACGGCCGGCCGTTCAATCCCGGTTCCCG 3219858 28 100.0 33 ............................ TGACGGTGCCTATGTTTCGTGCGCTCAGGATTA 3219797 28 100.0 33 ............................ CTGGTGGGGGTTCCGGCCCGAGGTGGGCTGAAG 3219736 28 100.0 33 ............................ TCCGGCGCGGCGCCGTTCGCCCGCGTGATGGAG 3219675 28 100.0 33 ............................ CGGCGCCCCGCTGTCGTCGAGCGCGTCGCACAA 3219614 28 100.0 0 ............................ | A [3219588] ========== ====== ====== ====== ============================ ================================= ================== 38 28 100.0 33 GGCTCCCCCGCACACGCGGGGATAGACC # Left flank : CTTGCCACTGGCTTTCAGCGTCGCTAAGCGCGTGATGGACGATCCGTCTTTGCCATTGGAGAGGGCACTGCGCAAAGAAGCCGCCCGGCAGTTTCACAAGCAAAAAGTCATTCCGAAGATGATCGACCGCATCAAGGAGTTGCTGCATGTCGATGACGGTAATGGTGACGCGTAACGTCTCTCTCCGCATGCGCGGCTTTCTGGCATCCTCGATGCTTGAATTGGCCCCCGGTGTCTATAGCGCACCGCGCCTCTCGACTGCAGTCCGCGAGCGTATCTGGGCGGTGGTTGAGGATTGGTTCACTGCCGAGCAGGATGCCTCGGTCGTAATGGTTTGGGTCGATCCCGCAATGCCTGGCGGACAGAATGTCCGGACTCTCGGGCTGCCACCGGTTAAATTCGTTGAACTCGACGGAATAGTCCTGACTCGTCGACCTTAGGGTTTAGTGGATCTTTAACAGTCCGCTTTTTTGTTTTACCTCAAAGCGTTAGCCTATAGA # Right flank : CCGGCGGTGTCAAGGACGAAGTGCAATACCTGGTTCATTGAAGGAGCACAAGGAAGTCGAGCGAAGCGAGCGAGTGCGACGTCCCCGCGAAGCCATAGGCCCGGATGTTTTGCCGGAATCCGCGGCTTCATCGCGGGTGGAGACGAAACATAAGGGATCCGACAAGGCGACGAGTCATTGGGGGCGCCTTGTCGGAGTGCATCGCGGAGAGGCGGACGGATCCGGGGCGGACGCAGGACGGCGCGGGCCGCCGAAGGCAAGGACGTCGCCAGTTTTTTGCTCCCGAGGGGGACGGGGATGTCCCGTCGGGTTTCGCAAAAAATGGCGACGCTCCATCTGACCGAAAGAAGCCGATGAATACGAGAGCCTCCGGAGGAGGGACACTCCCGTCCCGACGTCTGTCGACTCAGATACGATCCCGGGTCATATGATGAGGATGCCTCTGCCCTTAACTTGCCTCCCGCGCGTTTCGATGATCCTTTCAGCGTCGGCCGGACGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //