Array 1 2938742-2938273 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXR01000001.1 Saccharothrix variisporea strain DSM 43911 Ga0197496_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2938741 37 100.0 36 ..................................... GTGAGCACCAGGTACGTGTGGCGCGGCGTCACGCTC 2938668 37 100.0 36 ..................................... GTGAGCACCAGGTACGTGTGGCGCGGCGTCACGCTC 2938595 37 100.0 35 ..................................... CACGGCAACGCCTACTGGCGGCACCTGCGCGACAA 2938523 37 94.6 35 ..................CT................. CCCTTGGAGCCGGACGTGCGCGACGTGATGGAGAA 2938451 36 89.2 34 ................-....G..G....T....... CGGACGGGGTCCGGCGAGCGGCGCGCTGTACGGA 2938381 37 94.6 35 .............A...............G....... GACTACGTGTCGGCGCTGGGCGACCGGCTTGGTGC 2938309 37 91.9 0 ...................T.TG.............. | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 95.8 35 GCAGCGCTGGGACGTGCGTCCCAGCGAGGATCGCAAC # Left flank : TCGTCAAACACATCACGGCCTACCGAGAACGCTGGAACATCCCCGACACCGAGCCAACCCCTCTAGGCTGTGAAGGCAGAGGAATCCAGAAGCGTGCTCACCGATGGCTCCACCGGAGACTTCTCGCAATCACTCGCCATGACGGCACCTCCGTCCAAGGCGAGCACGACCTCGCCGCGATGAGGACCCGAGCCTTCCGAGTCAGGCGCGAAGCTGCGAAGGCGGCTAGGCAACCACAACCGCCGATGATCGCGCCGTCCGAGGGTCCACGCGCACAGGACCCCAAAACCCGCCCAAACTTGACACCCTGAGATGGCCCACCACGCCTTTCACTCGCCGTCGGCCATTGCACATGCGCGCGACCATTGCTGGTTCGGAACCCCAAGCGTCGTGCGACGCGCCGAGAGGTTCCGAAGCCGAGAACGGCGTGTCCTCTCAAATTGTGGGACCTGAGACGATGTGGATAGTGCACACGTGAGCATCCGTCCACGTCGTGCAGG # Right flank : CATGTCGAGCTGCCTGCCGGGGTTGCGGCGCGACGGACGTGTGTTGGATGCGCGCCCGTCTGCTGGGCCACAGGAACCTCAACACGGCCCAGGCTTACATGGCCGTCTTCGACGAGGAACTCGTCCGCTCCTACCGGGCTTTCCTCGGCAATCGCCGCGCCCTGCGCCCCGAGGCCGAACACCGCGAGGCCACCGAGCAGGAGTGGCGCGAGTTCCAGCAGCACTTCCAGACCCGCAAGCTCGAACTCGGCGAATGCGGACGCCCCTACGGCGCCCCCTGCAAGCACGAACACGCCTGCATCCGCTGCCCCAGCCTCCGCGTCGACCCCCGCGCCCGCCCCCGCCTGGTGGAGATCATCGACAACCTGCGCGACCGCATCGCCGAAGCCCGGATGAACGGTTGGCTGGGTGAAGTCCAGGGACTTCAGGTCAGCCTCAACGAGGCTGCACGCAAACTGGCCGGCTTCGACCGGGCACGCGACCGTCAACCCGCCGGCACG # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGGACGTGCGTCCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.80,-16.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 2998593-2998122 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXR01000001.1 Saccharothrix variisporea strain DSM 43911 Ga0197496_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2998592 37 100.0 35 ..................................... ACCATCTCCACCCCGGACGCGATGAGGCGTCGCAC 2998520 37 100.0 35 ..................................... GGCGGCTGGGACACCACCACCGCCTGGCTCGGCCC 2998448 37 100.0 40 ..................................... CGTTGAGGGTGTGGCCTGCACCTCGGGGGAGACCGCCCAG 2998371 36 97.3 34 ............................-........ GTGATGTGAACGGCGGTCTCACCCCCGGCCCCGG 2998301 37 100.0 35 ..................................... TACCTGCAAGAGATCATCGGCGGTGCGTCGAGCGC 2998229 37 94.6 35 ..............TT..................... GAGGCGTGGAACTGGCAGGAGTTCGGCGCTGACGT 2998157 36 81.1 0 A.......A...-..AA....A.........T..... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 96.1 36 GCAGCGCCGGGACTCGCGTCCTGGCGGGGATCGCAAC # Left flank : ACCCCGCCCCGCTACCGGTACATCCAGGCGCGTGGCGGGAAGCGTTCCTCCCACGACGCCAAGCCGACCACCCATGCGACCCCACCGCCGGCGAACCACGCCGCGGCGACTACCTGGAACGGCTCCTCCAGATCCTGGAACTTATCGCCCGCGACGGCAGGCCCCTTCGCCTCTCCCAGATCTGCGCCCAGCTGGACCTGCCGATGACCACCGTCCACCGGCTCCTGATCACCATGTGGAGCGCCCGCCTCCTCCACCGCGACGCCAAACGCCGCTACCTACTCGGCGACCGCCTGACCACCCTCGTAGGCCACGACGACCACAGCGCATCCTGAATCACCATCAGCGGCCAGGCCGCCCCGACGGTGCAGGCCTAGGAACCTCAGGCGTGATGCGACACGCCGTGTGGTTCCGAAGGCGAGAACGGCGTGTCGTCCCAGAAGCCGAGAACAGGCGATGGTTCGCTACCCGCGTGCTTGTTACCGTGCTGGTCAGGCACC # Right flank : GGAGCTCTACATGGCGATGGGTCGGCACCGGGATGCGGCAGGTTCAGGTGCTGCGGCTGCTCCTCCATTAGCCTGACGAGGCCCTCGATCGACTCGACAACGCCCCGTACCGGGGAGCGTCGATTTCGGTGATCTCGCAGGTCCAAGCAGGCCTGAGGATGGCTGGTCGGCTTGCAAGATCAGGCACGTCGTATTCGGCGGCGAGCAGCACCCTCACGATCAATCGACTGCCAGCCCGGTCGAGGCGGCTAGCCTTTCGCAGATGGTCGCCTCGAAGCCGCGTCCGGCGTCGGTAGGACCACGGCGAGGTCGTCCCACGTGCGTCGTGGTGGGATGGACCACCGGCATCGCGTACGGCGAGGGCCATGACGTCGTCGACGTGTTCAGGCACTTGGTTGAAGAACCTGTTGATCTCGGCGCGGTCCTCGAGGGCGCGACGGCCGGCACGCTGAGCTGCTGTCTGATTTCTTCGGAAATCGAGGTCGTTAGCGGCGATGTGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGGGACTCGCGTCCTGGCGGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-15.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 3014289-3013305 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBXR01000001.1 Saccharothrix variisporea strain DSM 43911 Ga0197496_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3014288 37 100.0 34 ..................................... AACAGGTAGCGCGTGTTCGCCCCGCCGTCCACGT 3014217 37 100.0 35 ..................................... AGGAAGTCGACCGCCGCCGTGACCTCCCGGTCGGC 3014145 37 100.0 35 ..................................... CCCTGGATCGCGGCGGTCCAGGCGCCCAGCGCCAG 3014073 37 100.0 35 ..................................... CTCGCCAAGAACGCAGGCGGCGACCGGGTACGCAT 3014001 37 100.0 38 ..................................... GACAGCAGGATGCGGGACTTGCCCAACTCGATGTCCCG 3013926 37 100.0 37 ..................................... GAGTCGGGCCGAGGGCACCGAGCACCACCCGCCGGCA 3013852 37 94.6 35 ..........................C....T..... TTGCCGCCCACGTAGACCAGGGAGCCGCTGGCCGA 3013780 37 97.3 37 ............T........................ AGATAGATGACCTTGCCTGGGCGGCCCGCGGGCGCGG 3013706 37 94.6 36 ............A.....C.................. CTCGTGCCGGAAGCTCCGGAGTCGCTGACGTCGGTA 3013633 37 100.0 36 ..................................... CGCCAGGCGATCAACGCGATCCCGCGCGAGGCTACG 3013560 37 94.6 34 .................A.......C........... GCGTCACGCCATGTGCGTCGTCGCGCGGTCACGG 3013489 37 94.6 37 ................G...G................ TACGCCCCGAAGGCGGAAATCTACCGCGCGGACGACA 3013415 37 100.0 36 ..................................... GCCTGGGAGCGAATGGGGAAGGTGGCAACCACGGAG 3013342 37 78.4 0 T..A............T.....G.....CC.T....G | T [3013308] ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 96.7 36 GCAGCGCTGGAACGCGCGTTCCAGCGAGGATCGCAAC # Left flank : CGGTGGCGTAGTCGTAGGTGCACGATCCTGCGCACCACCGGCGCGGTGCTGTGGTGCGGGCGGCTGGACCGGTCGGTCATGCCGGCCTCGCCCGCCTGGCGGTAGCGGACCGCCCACCGGTTCGCGGTCGGCCAGGACACACAGAACCGCTCCGCCGCCCGTGCCACCGGCCACCCGTGGTCCACCACGAGCCGGGCCAATCGGAGACGGGCACGCGGGGTCAACGCTGCGTTAGCGTGGGACACGAAGACCTCCCGGGTCGTGCGGAACCTCAGCAGCTCCACACCACCCCGGGAGGTCTTCCCACATCAAGACCCGAGTCAGACCGACTCGTCACACAACCAACGTCCCCGAGCAGTACAACTAGGCGTGGTTCGGAACCTGTAGCGTGGTCCGACACGCCGGTAGGTTCCGAACCACAAGTCGGCGTGTCGTCTCGAAGCGTGGGACGTGCGGTGCCTCTTCAGTTCCCTCCGGGGCATTTATGCACGTCACGCGCC # Right flank : GTGGCCGGCTATACCGAGGAGGAATCCATGCTGCAGCGATGGGTAAGCGCAGCTTGAAGGAGTTCGCCAGTGCTCAAGCGCGTCGAGGGTCTTCGTGATGCGCGATGTCAATGGGCTGGGTCCACGGCGTGTGGCGCCCTTTGTCGATGCAGCGGCGGAGTGGGGTGTTGGGTTCGGTGAGGCGGGTGAGGGTGGGCCAGAGGTAGTGGGTGCGGTAGTGGATGGGGGCGCTGGTGGGGCCCTGGGTGGCTTGGTAGGCGTCTTGCCAGGCGGCGAGTAGGGCGGTGAGGTCTTCTACGGTTCGGGTGTGGTGGGGCCAGCAGGGTGGGATGCGGTGGGTTGGGCCTAGTTCTTCGCGGGTGTTGAGGAGTTCTACGAAGTTGTGGAGTTGGGACCGCAAGACTGTGGCGCGGCTTGGGGGCATGTCGGTCCAGTCCCAGTCGCTGGGGCCGGTGCGGTCGTGGTTGCGAGTGAGGGATTCCATCGCGTCGAGTAGGTGG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGAACGCGCGTTCCAGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.40,-13.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //