Array 1 96067-95002 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFTT01000001.1 Escherichia coli strain CVAST0654 NODE_1_length_381133_cov_67.8306, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96066 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 96005 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 95944 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95883 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95822 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95761 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95700 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95639 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95578 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95517 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95456 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95395 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95334 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95273 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95212 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95152 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95091 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95030 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113183-111568 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFTT01000001.1 Escherichia coli strain CVAST0654 NODE_1_length_381133_cov_67.8306, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113182 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 113121 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 113060 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 112999 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 112938 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 112877 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112816 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112755 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 112694 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 112633 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112572 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112511 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112450 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 112389 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 112328 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 112267 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112206 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 112145 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 112084 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 112023 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111962 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111901 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111840 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111779 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111718 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111657 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111596 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //