Array 1 866416-866710 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010405.1 Bacillus safensis FO-36b chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 866416 32 100.0 33 ................................ TTGAAAGCAACACTTCTAGTCTGTTTTGCTTTA 866481 32 100.0 35 ................................ CATTATGTTTCCTGTACCTGCATAGGCGTATCCTC 866548 32 100.0 34 ................................ ATAATATTGCCCGATCCTGCATAGGCGTATCCTC 866614 32 96.9 33 ...........T.................... ACAGTAGCCGTATTAATTACAGGTCTTATATTT 866679 32 81.2 0 ...........T....A..T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.6 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATACACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACAAAACTGGGTAAAAATGTATATTTCATGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCGCCAGCCATTTTCCCCTAATTGAGCGATCTGGTCGCACTCTACATGAGTGCGTGGATTGAAATCGCTTGATGGCTCGCTAACATCTCGTCAGCTAGTAGTCGCACTCTACATGAGTGCGTGG # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 867054-867352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010405.1 Bacillus safensis FO-36b chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 867054 32 100.0 33 ................................ TCGCCAGCCATTTTCCCCTAATTGAGCGATCTG 867119 32 100.0 35 ................................ CGCTTGATGGCTCGCTAACATCTCGTCAGCTAGTA 867186 32 100.0 34 ................................ GCTAATTTCGCGCTCAATTGGCACACGCTTAGCC 867252 32 96.9 33 ................T............... GATTTCTTCGTCTGTTAAATCTTCATAGTATTT 867317 32 84.4 0 .......C...T............T..TC... | A,G,CA [867326,867334,867340] ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.3 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTCTACATGAGTGCGTGGATTGAAATATAATATTGCCCGATCCTGCATAGGCGTATCCTCGTCGCACTCTATATGAGTGCGTGGATTGAAATACAGTAGCCGTATTAATTACAGGTCTTATATTTGTCGCACTCTATATGAATGTGAGGAATAAAATTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TGATTGTGTCTTAAACGGTTATGACTACCTTAAAGATCATCTTCTTACAACATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGTGGTGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCCGAAGAAGTCGACTTTGCTTCTAATCATGGCGGGCTGACAGGAGATTCTAGAGAAGTGATGTGGTTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTTTTTGATGAGCAGTA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 875027-875388 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010405.1 Bacillus safensis FO-36b chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 875027 32 100.0 33 ................................ TTGCGGATCAGGTTGCTGCTCGCCTTCTCCTTT 875092 32 100.0 34 ................................ CACCAACTAAAACGCCCGCCAACCCTAGACTAAT 875158 32 96.9 34 ...........C.................... TTGAGTGTGTTTCATCCAGCCTTTCAGATCATAG 875224 32 93.8 33 ...........C.C.................. GTTAGCATTCCAAGATTTTTATCTAGCGCAATT 875289 32 100.0 35 ................................ CCCACCAATGAAGGTTATCTCCACTTCGGATAATA 875356 32 90.6 0 ..T................G.......A.... | T [875385] ========== ====== ====== ====== ================================ =================================== ================== 6 32 96.9 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATACCAGAGACGGTAGGAGAAACATTCAAAGTAGATGTCATGACCCCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTATCAGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGAACCGTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTGAGTGTGAAAACAAAATTCTATATAGAAACTTGAGGATTTTAACGATCATTTCCTAAAAAATGTTATAATTAAGGCGGAAATCGCA # Right flank : TTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAAGTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGTGTGAAAACAAATTTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATGAGCGCGTGGATTGAAATCATTCTCTTGATTTATAAAAACTTGTTGATTGTGTCGCACTCTACATGAGTGCGTGGATTGAAATAAGCGCACGTCTCAATTGACGAGCTGACGGCATATCGTCGCACTCTACATGAGTGCGTGGATTGAAATTCTCTGTTAATGATCAGGAAGGATTCGAACCGTCGTCGCACTC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 875680-875910 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010405.1 Bacillus safensis FO-36b chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 875680 32 96.9 33 .................C.............. CATTCTCTTGATTTATAAAAACTTGTTGATTGT 875745 32 100.0 36 ................................ AAGCGCACGTCTCAATTGACGAGCTGACGGCATATC 875813 32 100.0 34 ................................ TCTCTGTTAATGATCAGGAAGGATTCGAACCGTC 875879 32 81.2 0 ...........T......AT.A...G.A.... | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 94.5 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GGATTGAAATTTGAGTGTGTTTCATCCAGCCTTTCAGATCATAGGTCGCACTCTACACGAGTGCGTGGATTGAAATGTTAGCATTCCAAGATTTTTATCTAGCGCAATTGTCGCACTCTATATGAGTGCGTGGATTGAAATCCCACCAATGAAGGTTATCTCCACTTCGGATAATAGTTGCACTCTATATGAGTGGGTGGATTAATAATTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAAGTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGTGTGAAAACAAATTTCTATATAGAAACTTGAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTTGTCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTCACCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTAAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTAGATTGAAATCTTCTGAAAACCCCGTCACTATTTTACCTGCAATTGTCGCACTCTACATGAGTGCGTGGATTGAAATTTTTTTTACTGGTGTGTAATAAGGCGCCACAGCCGTCGCACTCTACATGAGTGCA # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 876256-876485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010405.1 Bacillus safensis FO-36b chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 876256 32 96.9 35 ......................A......... CTTCTGAAAACCCCGTCACTATTTTACCTGCAATT 876323 32 100.0 34 ................................ TTTTTTTACTGGTGTGTAATAAGGCGCCACAGCC 876389 32 96.9 33 ....................A........... GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGT 876454 32 68.8 0 ...A.....A....A.....A.A...CACTG. | ========== ====== ====== ====== ================================ =================================== ================== 4 32 90.7 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CATGAGTGCGTGGATTGAAATAAGCGCACGTCTCAATTGACGAGCTGACGGCATATCGTCGCACTCTACATGAGTGCGTGGATTGAAATTCTCTGTTAATGATCAGGAAGGATTCGAACCGTCGTCGCACTCTATATGAGTATGAGGAGTAAAATTCTTGTCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTCACCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTAAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TTTCTGCGAATTACATAAATTCAAATATCTATCCCCCCTAAATCCAAGCCTTACAAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCTATATGGCAGATCGCGACAAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAAACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCAGTATCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACGACCTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATCGTAGGCGAAATAATAATGTCTTCAATTTCATCGAATCGTGCACGTAGCTGAC # Questionable array : NO Score: 6.59 # Score Detail : 1:0, 2:3, 3:3, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //