Array 1 259636-260726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHY010000003.1 Akkermansia muciniphila strain CSUN-7 AmI assembly_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 259636 36 100.0 29 .................................... ACTCGGTGATCTTCCTCCGGTAATTGTCA 259701 36 100.0 30 .................................... AGCGATACCCTGCTAACGCCTTCAAGTCAT 259767 36 100.0 30 .................................... AGCGATACCCTGCTAACGCCTTCAAGTCAT 259833 36 100.0 31 .................................... CGGAATGCGGCTTGGGTATGTAAAAAGGTGG 259900 36 100.0 30 .................................... CGCCGGGAAGCGGGTAAAGTAGTGCTCTCC 259966 36 100.0 30 .................................... TCCAGCAGGTCTTTATCCTCATTCCAAACG 260032 36 100.0 30 .................................... GCAGAGTTCTGATGTTATTTGGCCGCCCAT 260098 36 100.0 30 .................................... TTTTTTCAATCAGGGCTTTCAGCGTCCGGG 260164 36 100.0 30 .................................... GGGCCGTCTGGTCATGGCTGACGGGTTCAG 260230 36 100.0 30 .................................... GAACAGGCGTAAGCACTCTGATCATCGACG 260296 36 100.0 30 .................................... TCAATGCCTACGGCCATACGTTAATTCTCC 260362 36 100.0 30 .................................... CAGCCCCGCGCAGGGCACTTATCTTGTTTC 260428 36 100.0 30 .................................... AAAACTTCTGGCCTATGCCATGTCCGGGCA 260494 36 100.0 30 .................................... AATCCGAAGGCAGGGGAATGTGGTCTTGTA 260560 36 100.0 29 .................................... AAGATTGGTGACACCATTGGAGCGGGCCA 260625 36 100.0 30 .................................... CCTGCATGTAAATAAGCCTGTTCAGACTTT 260691 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : GACTCTATTTATAGTTTTATGTCTGAAGGAAATAAAACAATGCAGGCGAAACGACGAAAAAGAGGAGGGGAGAAACGTCCGGCCATTAGTATTGGGCATTGTCGCATGGTTTTTATTAGTTTGGATGCTCATCTGCCATCCTGAATGGCTTAGGATTTGCGCTGAAACATTTTTCTTCGGATGCGGCGCTTTTATGGCGGCCTTGATCATCATAATTTGCTTGCTAGGGTGGAAGAACAAGAAACGCGAAAAGCAAGAAGATTGACATGTTGAGCATGGGAGCTATTGGAAAAATTGCGTCTATGCTTTTCTCCATATTGTTTGATGCCTTTCGTAGTTATTCATTATTCTAATTTTTCCAATTACCTCTGGGAAACCCTGGGAATGAAAAATCTCGTTGCACTGGATACATTCTGCCGTTTGCAGGTGTTTTTCTTGATGTGACAGAAATCAACAAGGCACAGTACAATAAAAGAACGGTAGTTTGAGCCGTCCCGGTG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 229216-228851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHY010000004.1 Akkermansia muciniphila strain CSUN-7 AmI assembly_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 229215 36 100.0 30 .................................... TCTTAACAAAAAAGGAATACTCGTGAATTT 229149 36 100.0 30 .................................... TGAGCAAAGCAACTGCCGCCAATACCGAAC 229083 36 100.0 30 .................................... CGAAAAAAATCGCATCTGGCAGGAATCTCT 229017 36 100.0 30 .................................... TGTATATAATCAAACTATACTTGACTTGTA 228951 36 100.0 29 .................................... TGCGGGCAGTCCTGCGCCGTAGGTGACAG 228886 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : TACATCCACCACAACAGCTTTGAATTGT # Right flank : AGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCTATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATACTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATATGCCATGGTTCATACGGTCCGGATTGCCCGGCAAGAACTGCTTTACGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCATCTGTTTGTTCTGGTGCATAACAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //