Array 1 4792-2944 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJSJ01000057.1 Clostridium perfringens strain TAM-NE42 contig00057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4791 29 100.0 36 ............................. TTTCAATTGTATCTTTGTCAATCTCTAACTCTTTTT 4726 29 100.0 37 ............................. AAGGAAAATAATGCAGCTAGAACGCTTTCTGAATCTC 4660 29 100.0 36 ............................. TGTACTAAAACTGGATAATCTCCAATATCTAAATTA 4595 29 100.0 36 ............................. ATTATTGTAAAGTAATACTAAGAAATACTAAGTATA 4530 29 100.0 37 ............................. TTATTTATAATCTTAAAAATAAAGAGGGAAGCTATGG 4464 29 100.0 36 ............................. AGTTGATATTTGGAGTAAAGATGGAATTGAAGCTAG 4399 29 100.0 36 ............................. AAGAAGAACTTTACAATGCATTAAGAGAAGAATGTA 4334 29 100.0 36 ............................. TAAATATTTAATAATTGTTTAAATATACTTTCAAAA 4269 29 100.0 36 ............................. TATAAATTTGTTAAATATAATCCTTATACGATAGAA 4204 29 100.0 36 ............................. TCCCTTCTTCTTTCCACATTTTATATCCTGTAATGG 4139 29 100.0 36 ............................. TGTACTAAAACTGGATAATCTCCAATATCTAAATTA 4074 29 100.0 36 ............................. TTGGTATTACTAGCTTTGAAGCACTTACAAGTAAAA 4009 29 100.0 32 ............................. CTCCTAAATCACAATCTTTAAAAGACAATTCC 3948 29 100.0 36 ............................. CTTATAGCTGCATTGATAGGTGCTTTAATAACTCCT 3883 29 100.0 36 ............................. TGTTAAAGTAGGATATTTTAGAGAGTTTGGAACTAT 3818 29 100.0 36 ............................. AGTAATGATAATAGATTAGATGATAACTTAAACTGT 3753 29 100.0 35 ............................. ACGAAACCAAAAGAACAATAATACTTTTCCATTTT 3689 29 100.0 36 ............................. TGTTAAAATCATCTTCATTCATGATTTGGAAAGCCT 3624 29 100.0 36 ............................. AACATTGGTGTACATTTAACACTTAAAGATTTTAAC 3559 29 100.0 36 ............................. AATGTTTGTGTCCAATCTCTACTAAATGCTCCTTTG 3494 29 100.0 36 ............................. ACTAATTTCATTGAAATACCTCCTAATAACTAACGT 3429 29 100.0 36 ............................. TGTAATCTCTACATGTACTATGACACCCAACAATTC 3364 29 100.0 37 ............................. GGAGTTTTACTTTTCTTTATATCTTTTCTTTTCCATG 3298 29 100.0 36 ............................. TTGGTATTACTAGCTTTGAAGCACTTACAAGTAAAA 3233 29 100.0 36 ............................. AAAAGTTATCAACAAGAATTAAGGGATATATCTCAA 3168 29 100.0 36 ............................. TAGTTTTGGTAAAGTTAATAAGATATTAAAGAAACA 3103 29 100.0 36 ............................. ATTTTTTGCTCTAACCCTTGCCTTCCCATTTAAGCG 3038 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 2972 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ===================================== ================== 29 29 99.1 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAGGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAAATCTATTTTCTTATAATACTAGCTATAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTAGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGTTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTTTATAATAAGAATTTAAAAGTAAAAATGGACATGCTATCTGTCCATTTTTACTTAACTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACAGCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //