Array 1 55532-54449 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCS01000022.1 Bacteroides fragilis strain US326 contig0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 55531 35 100.0 35 ................................... ACTAATACAGTCAAAGGCTATGGATTGAAAAAAGT 55461 35 100.0 36 ................................... CGCTTACCGTCTTAGCCAAATGGTTAACCACTTAAC 55390 35 100.0 34 ................................... GCTGTCTTATAGTCCTGTGCAACGAGGATAATTT 55321 35 100.0 35 ................................... ACCGCCGAGGCTGAACGTTTAGAAGACCGCCGTGA 55251 35 100.0 32 ................................... ACAATCGTTGCGGAAGAAATCCAAGACGAACT 55184 35 100.0 37 ................................... ACAATTTTCTAAGGTGGCGGTTACTGAAAGGTATTAC 55112 35 100.0 34 ................................... TTGTAATGTTCTCCTCATGTTCTGGTGAGGAAAT 55043 35 100.0 35 ................................... TTCACTTAAAAACCAAGAATATGGAAATATTTATC 54973 35 100.0 34 ................................... TTGTAATGTTCTCCTCATGTTCTGGTGAGGAAAT 54904 35 100.0 35 ................................... TTCACTTAAAAACCAAGAATATGGAAATATTTATC 54834 35 100.0 34 ................................... AATTATCGCCGCGCTTTTTATGGTGTGGTCGTGT 54765 35 100.0 38 ................................... AACTTTATAATAGTGATCCTGCAACTTGGACCAAGTTT 54692 35 100.0 36 ................................... CGTTAAGTACCGCAACGCCGCGGTCTTCGCCAAAGT 54621 35 100.0 34 ................................... AACGTACTGGAAAGCTGCCGAAGAACAGATTCGC 54552 35 100.0 34 ................................... AACGTACTGGAAAGCTGCCGAAGAACAGATTCGC 54483 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 16 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTTCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGTATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 16556-16869 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDCS01000037.1 Bacteroides fragilis strain US326 contig0037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 16556 35 100.0 36 ................................... CCCCGATGCGTTGTGCGGCATGAAAAATTTTTATCA 16627 35 100.0 33 ................................... TTCCGGAGCTTCATTCCAATATAGCTCCTTACA 16695 35 100.0 35 ................................... TTGAAACCAGAAAAGATAAAAACTCTTTGGGAAAA 16765 35 100.0 35 ................................... GAAGGCAATTGCTTTTTTTGCCAGCCAATTGTAGA 16835 35 85.7 0 ...........................C.A.C.GT | ========== ====== ====== ====== =================================== ==================================== ================== 5 35 97.1 35 ATGTAGATCTATTCCAGTATAATAAGGATTAAGAC # Left flank : CATAGGCATCTTGAAGATTCCCCGCATTCACTCGAAATAGTTTTTTTCTAAATTCTTTTGCGAAAAAAAGAAAAAACTTAGTCATCTGATAATATGAAGATTATTCTATATTAAGAAAAAATAAGTGTAAAAAGAGATGCGCAAATAATAGCTTTTACGTATATTAGCAAATCATTTGCGAAAAAAGGATTGATATGTTATGCGCTCTTTGAAATATTGTTCTATATATCAGCAACTTACGCAACATAGTTTTAGGGTTGTTTTCGAAACTCGCCCACCCCTAAATATCCAACGATTATTTGCGAAAAATGAAGTTTACACAGCATTCTAATTATCAATCATTTAGGTCAAAAAATCACTATTTACACATCAGAATTACAGAAAAAAAGACCTACTTTTGCGAAAAAAGACTTAGATTCGCATCTACTATTCTGGTTTACAACCTATTATGATCACAGACAAATACATTTAAGAATATATAATAGTCTAATAATCAGAGT # Right flank : TTGGTTCTTCTTCAAATTTGGTGGTAAGCTTTCTTCTACTCATGAATCTAATTCAGTTTTCGGAAGTGTAAGCTCTCGTTTATAGTTGACAAGAAAGCAAGTATCCCGGCTTTCGCCCGAAAAGCCCATTCGTGAGGCGGAGAAGCGAATTTTAGACTAAACCATCTGAAAATCAACATCTTTAAAAAGTAAGATTTCTATCCTCAAAAGCTTTGTTTTAACACAGAGTTAAAGCTTATTCTTTGGATGTAAATAACAAGTTCTTTAAATGCATAAGACTTGTTATTTGCGCACAAGAACCTGACAACCTGAAAAAGGCGTTAACAATGTTAATTGAAGAAAGGTATAAGGATGAAGATACTGGTTCAGACGGTGTAGATTCACTTCCGAAACTTGAGTTATCTGATTCAGCCAGTGTCTGTTTTTTCTTATTAAAGCGTAAGCATTCGGCTTCGTGCGTGTTTCTCTCCAAGTTATAATAAAGTCAAAAGCCAGACGTA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATCTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //