Array 1 1564-208 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFQN01000010.1 Treponema pectinovorum strain Marseille-4-CSURP7639, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1563 36 88.9 30 A..TT.A............................. GTAAAAAAAACGAAAAAGGTATCGATTTTG 1497 36 100.0 30 .................................... CCCGCCTGCTTATTTAAGCAGTGTTAGTAG 1431 36 100.0 30 .................................... GCGTCTATCGTAAAATGCGAGCGGTCAACC 1365 36 100.0 30 .................................... AAAGTGAAGCCGGTCTTGCTGTTTTGGTGG 1299 36 100.0 30 .................................... AAGAACCGCCACCAAGCATAGAAGTACGGC 1233 36 100.0 30 .................................... TTGTGGTTATCTTGTCTACTGTAGGTTATA 1167 36 100.0 30 .................................... AAATATCGATTGTGTATGCTTTTTGCGCAT 1101 36 100.0 30 .................................... TGAATGTTCCAGTTATAGACGAGGAAGCGG 1035 36 100.0 30 .................................... TGCAAAGGCGACATAGTACCAGCAACACAT 969 36 100.0 29 .................................... ATTTTTATTTTGTTAGAAACCCACATTGA 904 36 100.0 30 .................................... AACTTTGAACCAATGGTAAAGTATCCAAAG 838 36 100.0 30 .................................... ACAGCCGATTGATAATCGTAAGACTGTTTT 772 36 100.0 30 .................................... CAAATCAAATTTACCAGCCGAAACATTGAT 706 36 100.0 30 .................................... GTAAGAAAAAGCGATAAAGGCTTTACCCTT 640 36 100.0 30 .................................... TCCAACTTCCAATCTTTGCCCTTGCTATTG 574 36 97.2 31 ...................................A GTTATCGTTTCGCTGGAATTGTCTTTGTGCG 507 36 100.0 30 .................................... TTTTTCTTTTGATTATAACGAACAAATAAA 441 36 100.0 30 .................................... TGCATATCAAGGGGGTGCAATATGTTTTTC 375 36 100.0 30 .................................... GAACGGTTGACAGTTACGATATGAAAAACG 309 36 100.0 30 .................................... GTTAATTCGCGCAACAACAATCCCGTCCCC 243 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.3 30 GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Left flank : TGTTATTCCTGTCTGCTTTGTAAAATCTCTAGCCGCTGCCTGCCATTCACCTATTTTCTGCCTTGCTCTTGTGTTGTCTACCCCTGCCGCTTCCTGCGTTAATACCTGCCGTTTGTACCGCCTTATGTTTCGTTCTATGCCTCTTAGGTGTTGTTCTCCCTCGTAGCGCGTCAGGCTCTCGCCGTTAAACTCTACTTTTTCGTTTGCTAAACTGTCTAAATCGTCTTGGCTGTAATGCTCTTTTGTTCCCTCAAAGTAGGGATAAAATGAATGTCGGCAGTTTATTCCACATATTCCTGTAGCACTTCCGAGTTCGCAAACTGAAAAAGGGCGATATTTGGGATTTGTTCCGCTACGTGAAAAAATTTGTCCTTGCCATTGTTCGTGTTCTGGTCTTGAGCCGATATGTGCAGAAACTTCAAACTTTTCAACTCCCAATTCGTCCGCATTGTTCAATATCTGGTTCGCTGCAATTTGGTTTATCGATGTGAGAATAAAAT # Right flank : TCCGTCTGATGTATTTTCTTCTGTTGTATGGAAATACAGTACATCAGGCGGATTTTTTTTGTGCGCTTATCAGAATAATAAGAGTTGTTCGTTCTGCTTTTTTTGTTGTTTTTCTCTTGAATGATAACTGATAATATTTCCATATTGATGATCCGTTATCGTTAGAATATCCACTTTTCCCTGCGCAGGCAAGTTTTTTTGTATCATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGTTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 208-846 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFQN01000023.1 Treponema pectinovorum strain Marseille-4-CSURP7639, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 208 37 100.0 30 ..................................... AGATTAGTTTATTTTTAAAAATATTTTTAA 275 37 100.0 30 ..................................... TCCAAGCATTTACGAAAGAAACATCTGTGG 342 37 100.0 30 ..................................... AAAACAGTCTTACGATTATCAATCGGCTGT 409 37 100.0 30 ..................................... CACCATACTCACCACTAGCAAAATATGAGA 476 37 100.0 30 ..................................... TGTTAATTACGACGGTATTTATTCAGGTGG 543 37 100.0 30 ..................................... TAGTGGATTTACTCGTTGGTATAACAGGGT 610 37 100.0 30 ..................................... CGTTGGATACTTTGCCATTGGTTCAGAGTT 677 37 100.0 30 ..................................... CTACAAAAGAAATTAAATAAAAGGAGGTGA 744 37 100.0 29 ..................................... CAGAGTTTGCTTCTCATCCAACTAATGCT 810 37 86.5 0 C.............................T.AA..T | ========== ====== ====== ====== ===================================== ============================== ================== 10 37 98.7 30 AATTTTAACTGATTAATTTTTCTGGTCAACCTGCAAC # Left flank : AATGATACAAAAAAACTTGCCTGCGCAGGGAAAAGTGGATATTCTAACGATAACGGATCATCAATATGGAAATATTATCAGTTATCATTCAAGAGAAAAACAACAAAAAAAGCAGAACGAACAACTCCTTTTATTCTGATAATCGCACAAAAAAAATCCGCCTGATGCACTGTATTTCCATACAAAAAAAGAAAATACATCAGACGGA # Right flank : TATTTTATTCTCACATCGATAAACCAAACTGCAGCGAACCAGATATTGAACAATGCGGACGAATTGGGAGTTGAAAAGTTTGAAGTTTCCGCTCATATCGGCTCAAGACCAGAACACGAAGAATGGCAAAGGAAGATTTTCACAAAGAAAGGATTATACAGCATTTGCGGACTGGGGAGTACAACAGGATTGTGCGGAATAAACTGCCGACATTCATTTTATCCCTACTTTGAGGGAACAAAAGAGCATTACACGCAGGACGACCTAGACGAGATAGCAAGCGAGAAAATGGAGTTTAACGGCGAGGAACTATCATACTATGACGGTGAGCAAAAACTTAGAGACATAGAACGAAACATAAGGCGGTACAAACGGCAAGCATTAACGCAGGAAGTGGCAGGGGTAGACAACACAAGAGCAAGGCAGAAAATAGGCGAATGGCAAGCAGCCGCGCGAGATTTTACAAAGCAGACAGGAATAACACGAGATAGCGCAAGGGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTTTAACTGATTAATTTTTCTGGTCAACCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //