Array 1 223508-225395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGB02000005.1 Pseudomonas aeruginosa strain MRSN 17623 scaffold00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 223508 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 223568 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 223628 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 223688 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 223748 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 223808 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 223868 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 223928 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 223988 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 224048 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 224108 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 224168 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 224228 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 224288 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 224348 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 224408 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 224468 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 224528 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 224588 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 224648 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 224708 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 224768 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 224828 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 224888 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 224948 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 225008 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 225068 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 225128 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 225188 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 225248 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 225308 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 225368 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 234668-233920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGB02000005.1 Pseudomonas aeruginosa strain MRSN 17623 scaffold00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 234667 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 234607 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 234547 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 234487 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 234427 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 234367 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 234307 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 234247 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 234187 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 234127 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 234067 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 234007 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 233947 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //