Array 1 21583-23442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYKA01000008.1 Chromobacterium subtsugae strain PRAA4-1 Contig.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21583 29 100.0 32 ............................. ATTGAACGCACTTGGGGTGTGGAAAATGAGTT 21644 29 100.0 32 ............................. CCCCCATGGCAGCGCACTTCCTTGCAGAATAG 21705 29 100.0 32 ............................. ACGATGGTGGTCTGCTTGAGGTTGTGGACCTG 21766 29 100.0 32 ............................. CCGCCTCCTCCTGATCCAGTCCCTAAGGGCTA 21827 29 100.0 32 ............................. CCGGACGACTACGCCAGCTTTCAGATCAATCC 21888 29 100.0 32 ............................. CCGTTGCGCTGATCAAAGCGCGCATGGAGGCC 21949 29 100.0 32 ............................. TCGAGGACGCCGGGTCTACAACCGAAGCTAAC 22010 29 100.0 32 ............................. GACACCATCAGAAATCGACTGCACCTGGAGGT 22071 29 100.0 32 ............................. CACATGGAGGTTGATAGCGCGGTCCGAGCTTA 22132 29 100.0 32 ............................. TGTCCTGATCGATGTTGTGACGAACTTAAAGG 22193 29 100.0 33 ............................. CACCACTGCGTCGCCGTAGCGCATCACCCCGAG 22255 29 100.0 32 ............................. GCAACTGAGCCACGCCGACAACCGTGCCGCAC 22316 29 100.0 32 ............................. GTTCATGTACAAAGGGGTCGAATGTAGAGAGA 22377 29 100.0 32 ............................. TCCTCTGGATTTCAGGCGAATGGGATGCAGGT 22438 29 100.0 32 ............................. TTCCCGGATGGCCTGAAATGGATTTGCGGCTT 22499 29 96.6 32 .......T..................... TTACCTCCGGGCGCGATTTTTGTTTGTGACGA 22560 29 100.0 32 ............................. TTATGAGGTTGTCTCCTCGGTGATCCTTGACG 22621 29 100.0 32 ............................. CAGTTCCTTCCGGTGAACCACGATGACGATGT 22682 29 100.0 32 ............................. TTCCTTTCGCCTACGATCAGCGCGGAGGAGAT 22743 29 100.0 32 ............................. TAGCCGGAGTTCGGCACCGTCGGATCGGCCGT 22804 29 100.0 32 ............................. GCGGGATCCGATGTACTGCTGTTCCAGGGCGA 22865 29 100.0 32 ............................. TCCAGGTGGTTGATCCGAAAACAGTTGCCAAT 22926 29 100.0 32 ............................. AGTTGCGGCTTGTTGGGCTTGGGCCAGGCTCG 22987 29 100.0 32 ............................. ATAAACCGCGCTTCTGATGATTGCGGTCAGGT 23048 29 100.0 32 ............................. GTGCCGATGCCGCGCATGCACTTCGCCATCAT 23109 29 100.0 32 ............................. CCGGCGATGTACTGGTTCTGCACGTCGAACCC 23170 29 100.0 32 ............................. GCCGTGGCGTCGCCGCCGGTTACCACCAGGGC 23231 29 100.0 32 ............................. GCGAGTGGTTTTCAGGCGAATGGAATGCAGGT 23292 29 100.0 32 ............................. TGGGGGTCCGGTGTCAGGCCGTAATAGGCGGC 23353 29 100.0 32 ............................. TGGCTGGTGGGGTTGGGGGGAAACAGGCCACT 23414 29 89.7 0 ..............C..........CT.. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.6 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : GCGTGCGCGCGCTCCACCGCCTCGCGGATGTCCTTGACGCCGGCGAAAACGGCGGAGAGCGGGATGAACTCGGCATCGAAGCTGGCGGCGAGTATGCGCGCCAGCGTGGTTTTGCCGACGCCTGGCGGCCCCCACAGAATCATCGAATGCGGCTTGCCGGCCGCCACCGCCAGGCTTAGCGGCTTGCCCGGCCCGATCAGGTGCTGCTGGCCGATGACATCGTCCAGCCGCGCGGGGCGCAGCGCTTCGGCGAGCGGCTTCTGGGGTTCGGCGGCGAACAGGTCGGGCATGGCGGGCTTCGGGCGGGATATTGCGGAGCAACAGTATAACAGTTGGCGGCAGGCATGAAAAAAGCGCCAGCCAGGCGTTTTGGGCGTGCATGCTTGCGGGATGGCGGCAGGCTATGGATCTGGGCGATTTGAGCGAAGTATTGTTCCGGAAAAATCGGTAGAATTTGGGAGTGGTTTTTTATCTTTAAAAATCAGTGGATTGAAAATGGT # Right flank : GCCTGTATCGAATGCCGGCATGAAAAAAGCGCCCTTGGGGCGCTTTTCGGCATCACGAGCTGAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGTACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGTTTCAGTACCTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCATCGTAGAAGGTGACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGAACCACCACGTCGAACTTGTCGTCCGCGCGGTATACGGCTTCGCTGCCGGCGCCGGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27793-28737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYKA01000008.1 Chromobacterium subtsugae strain PRAA4-1 Contig.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27793 29 100.0 32 ............................. CGCGTTCTCAGCGGGGTTTCGACGGATCGCAG 27854 29 100.0 32 ............................. GCGTGCTAACAGGAGAGGGCCTTTATCTAGAG 27915 29 100.0 32 ............................. GCGCGAAATTTACCGAGGCGGACGAGGATCGG 27976 29 100.0 32 ............................. GCAGCATTCTTCATACACCTCCCTTGGCGGAC 28037 29 100.0 32 ............................. GCGATGCAGCCGTATGAAATCGCCGTCCGCAC 28098 29 100.0 32 ............................. CGTTACAGTAACGCTTTCTCGCCTATGCTTCG 28159 29 100.0 32 ............................. AGCCGGGTATTTCGCCCGGACGGCATCGACGG 28220 29 100.0 32 ............................. CCATGCTTTTCGGCGACACCAACCAGGAGGGC 28281 29 100.0 32 ............................. CTGGGGGCGCAATGAACCCGATCCGCTTCACC 28342 29 100.0 33 ............................. GACCCCACCATGAACCGCTCCGGTCTGAAAGAC 28404 29 100.0 32 ............................. GCGATGATCCGGACGATGATGACGACGACGGC 28465 29 100.0 32 ............................. AGTTGCGAATCACCGCCAATTTCCTCCGTTTC 28526 29 96.6 32 ............................T TCTCGTCTCCAAAATGGTAATGATCCCAGTAC 28587 29 100.0 32 ............................. TCTAACAGAGCAGTTACGCCAACGAAGCCAAA 28648 29 96.6 32 ............................C GCTGGGCATGGGTTGCCCCGAGATCCGACGCG 28709 29 89.7 0 ........................GG..A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : TTTTCCAACGCCTACGCCGACAATCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCAGGCTGCCGCAGCTACAATGCGCCGACCGCGCCTTCCGCCCGGTTCACCTGCAACTGGCGCTGCAGGCGCTGACCGGCTTCGTCTGGCTGAACGCCGAGCGCACGGCGCAGCAAACCCGCTTCGCCGACGGCAGCCGCCTGAGCGCCAACTTCGGCGCGACGGCGGTGGGCGAGGGCGATCAGGCGCTGCCGCCGCAAAGCCTGAGGGTGGAGCTGGCTGGCCAGCCGCCGCGGCTGCTGCGGGTGGCGGATTGCGGCGGGGGCTGATGCGCGGCGATAATGCCGTTGTCGTTTTGCGGGCGCTGTGCCTGCGGTGACCTCCGCCGCGCTGGCCGCAATTTGGGTACGGAATTCTCGGTAGGATTGGGATGCGCTTTTTTGTTTTGAAAAATCAGTGAGTTGAATTTGGT # Right flank : ACGGCTTGCAAACGTGATGTGCGGCTTGTTTTTCTGGATGGAATGTCTCGGCTTGTGCCTGCCTGGCAAAATGCCGATAATGATTGAGCAAATTGCCTGATTGGAGATTGCCATGCCCGCACGCGCCGCATTCCGGCCCGACCCCGTTCTCATCCGCCGCGCCACGGTCAGGGAGGGAGAGCGCCGCTCCCGCCAGTCCGACTTGCTGGGCGCGCCGGTGAGCAGCGATTACGACATCGTGAAAGAGGTAGCCAAGGGCTTGGATCCCGGCGTGATCACTCGCCTGACCGATGAGGGGCTGACCCGGCGCGAGCTGGAGTTCGTCATTCCGCCGCGTACGCTGACCCACCGCATCAAAAACGGCGAACGCCTGAGCACCGACGAATCCGAACGCAGCGTGCGGCTGGTCAACCTGCTGCTGCAGGCCGAGCAGCTGCTGGGCGGCAAGGAGGCGGCAACCGCCTGGCTGCGCCAGCCATTGCGCCGTTTCGATGGCCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 38473-39906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYKA01000008.1 Chromobacterium subtsugae strain PRAA4-1 Contig.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38473 29 100.0 32 ............................. GCTTCCGGCCGGGCGCTTTGCATTCCACGAAA 38534 29 100.0 32 ............................. AGATATAACTGTTCGCAACGCGACTATCGTCT 38595 29 100.0 32 ............................. GCCTCCCAGTGGATGATGCTGCCGACAACGCT 38656 29 100.0 32 ............................. CGAATGCTGCGTGGGCGCAGTACAAACAGATC 38717 29 100.0 32 ............................. CGGCTGGCAGATCGTCCAGCTGCTGGCCGAGC 38778 29 100.0 32 ............................. GCTGCGGGCATGGCCGGTGCGGCGAACCAGGG C [38790] 38840 29 100.0 32 ............................. GACGGCGCGGTGGACACGTCGGCAGCGTTGAA C [38849] 38902 29 100.0 32 ............................. TGGTAGTGTTAACGATGTAGAACGTGACGGAA 38963 29 100.0 32 ............................. CTTTAGCTAGGGCTTCCCCCTCCCCTCTTCCG 39024 29 100.0 32 ............................. CCGGCTGCGCGACGCGAGCGGGCCTGGAATTC 39085 29 100.0 32 ............................. CTGGAACAGCGACACGTAGTTGATGCCGTGCT 39146 29 100.0 32 ............................. ACCGAAACCCTAGGGAATGCGCGATGAAAGAA 39207 29 100.0 32 ............................. ATGACGGACACCATCACCATCAACGGCCAGAA 39268 29 100.0 32 ............................. GGGCCGGCGCTGTGGCGGGGGTGACGCTGACC 39329 29 100.0 32 ............................. GTCAGTGCGCCGTCGAACGGGCTGAACCAGGC 39390 29 100.0 32 ............................. ACACGGAACACGACGGCTTGCCGGCCACGGCA 39451 29 100.0 32 ............................. CTATCGCACGCGCCTGGTGCGGTTGACCTGTC 39512 29 100.0 32 ............................. CGCCGCACGCCGTCGCCGTCTACGTCCTGGAC 39573 29 100.0 32 ............................. GACAGATTGCCGTAGCAAACATCCTCTTGACC 39634 29 100.0 32 ............................. CGCCCGGCGGGTTCGAGCTCGATGCCGATGCG 39695 29 100.0 32 ............................. CAGACTGCCAGCCTGGCGAAACCGGTCTGAGA 39756 29 100.0 32 ............................. AAAGACATCGAGCGTTTGGCTCAAACGGTGCT 39817 29 100.0 32 ............................. TCTTCCCATCCAACCAACAGATACGCGCCGGA 39878 29 82.8 0 ...................T..C.GT.G. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAGACGATGCTGGACGCCGGCGGCCTGGACAAACCGGAAGCCCAAGGCGTGGTGGACGCGGCGTTTCCGGAGGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAAAACGCGCCGCCCCGGCTGCGTGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTCGGCACTTACAACCGGAAAATCCGCGACTACCTGTGGCAACAGGTGGAGGAGGGGCTGGAAGAAGGCAATGCGGTGATGGCCTGGCAGGCCGTCACCGAGGCAGGCTTCGACTTCGTCACCCTAGGCGCCAACCGGCGGATGCCGGCCGAGTTCGACGGAGCCAAGCTGGTGTCTTTTTGGCCTCCACCCGGGGCGGATGGGGCTGGCGAATAGGATGTTGTCGGCTTGGACGGAATGGGGAGTTGGGTTCTTTAAAAATCGGTAGATTTTTGAGTGGTATTTTTGTTTTTAAAAATCAATTACTTGTAATTGGT # Right flank : GACTAAAATTCGGCAACTTACGCTTTGCACTGCGTGTCCCGCTCTCCGCGTACCTTCTACCTACTGTTGCATCTCGCTTAGATATTGCGTCAGCCGCAGCGTCAGGCTGGCGCGGGCGGCGTTGGCTGGCCATACCGCGTACACCCCCAGAGCTTCCACCTGCCACTCGGGCTCGACTTCGCTCAGCCTGCCGGCTGCGATGTCGTCCGTCGCCAGGAAGGCCGGCGGGGTGGCCAGGCCGCAGCCGGCGATGGCCAGCTGGCAGACGGCATCCAGGCTGTTGGCGCGGATGGCTGGCTGGATGGAGAAGCTGTGCGCCTCGCCGGCCGCGTCTAGCAGGGTTTTGCGGTCGGGCCGCATGCGTATGCCCAGCCAGGGCCAGTCGGCCAGCTCTTGCGGGTGGCGGGGCGCGGGGCGCGCCGACAGCAAGGCGGGCGCGGCCACCAGCAGGCGCGGCATGTCGAACAGGCGGCGCGATTTTAGCGCGCTGTCCGGCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //