Array 1 2427540-2420610 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021973.1 Methylophaga nitratireducenticrescens strain GP59 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2427539 28 100.0 32 ............................ TACTCCAGCTACAGACCAACAGTTGGGTGATG 2427479 28 100.0 32 ............................ ATCAGTTGCAAGTTGTTCAAAAACAATCTTCT 2427419 28 100.0 32 ............................ GATATTGAAACCGTTGCCGCTGCTGTAATTAT 2427359 28 100.0 32 ............................ TAGATATGCACCGTCATCGTGGTATGGATTTT 2427299 28 100.0 32 ............................ ATTATTTTAAAAAAGCTCTTAAATGGGAAATT 2427239 28 100.0 32 ............................ TCGTATCAATTTTTAATTCTATTCCCGTTCCT 2427179 28 100.0 32 ............................ TTGCCAAACGTGACGAACAAGAAGATTGTTAT 2427119 28 100.0 32 ............................ AATATCATTAGTCTTGAAAGGTTTAGTAGTAG 2427059 28 100.0 32 ............................ ATAAAAAGGCGTGCAAAATCATACTTAACACC 2426999 28 100.0 32 ............................ ATCCTGCTAAACCGCTTTTAGTCTCTTCCTCG 2426939 28 100.0 32 ............................ TCAAAATCATAAGGAAACTTACCGCCAGACTT 2426879 28 100.0 32 ............................ AGTCCCAATCTGAAGCAACCTTAAAAACAGAA 2426819 28 100.0 32 ............................ AGTAATCCTCCTGCTGTTCCTGTTACTGATAA 2426759 28 100.0 32 ............................ TATCAAATATGGGCTGGTGCATATCAGATTAT 2426699 28 100.0 32 ............................ TGTCGAGCATCGGCCGGCAGAACCTGCCCGCC 2426639 28 100.0 32 ............................ ATATAATCAGCAATACCTGACTCGATAGAGTC 2426579 28 100.0 32 ............................ TGTGCAAATGGATTTTGCACAGTGTAAAAATA 2426519 28 100.0 32 ............................ TAAGACTTTTTCGGAGAACAATCATGAGTCTA 2426459 28 100.0 32 ............................ TGAGCCTGTTGCAGAGGTTTTAACTCGATTGT 2426399 28 100.0 32 ............................ TTTATGACGATGCTCGTCGAGATTATTTATCT 2426339 28 100.0 32 ............................ ATAAACGAGTTCAACCCATTCAACGCATTGAT 2426279 28 100.0 32 ............................ GATAAGATAAGAAAAAGCAATAACCAAAGGAC 2426219 28 100.0 32 ............................ GTTATTTGATGTGAAAGTAAGCTCCACCTCAA 2426159 28 100.0 32 ............................ TATTTGTTATATTTATCTCGCCCCCCTTACTA 2426099 28 100.0 32 ............................ TAAAGTTTTTTAAGACGTGAGGGGATTCCTTC 2426039 28 100.0 32 ............................ AGCACCAACCAAAAGACGAGCAACAGCAGAAT 2425979 28 100.0 32 ............................ TGGCGAACCTGAAACGACAGTTATCATGATTA 2425919 28 100.0 32 ............................ AACAACATCAGAACCAACAACGACTCCAATAC 2425859 28 100.0 32 ............................ ATGTATATTTGTTTGGCTGTCCAACAGCGGTA 2425799 28 100.0 32 ............................ TAGTTTTAGCTATCTGTTTGGTCTGGTGATTG 2425739 28 100.0 32 ............................ ATTTGAAGAACCCGCACCTGTTGAAGTCCCGT 2425679 28 100.0 32 ............................ AACTAAAATTCATTTTGAGGTTCGCACTAATA 2425619 28 100.0 32 ............................ TTTTTCATAAAGACGAGTAAATGTAGTGGAAT 2425559 28 100.0 32 ............................ TGTGCTTTCTGTTTCTCGTGCCGCTGGCATGG 2425499 28 100.0 32 ............................ TATTTCTATAGTTACTCAGTTCGGTGCTGTTG 2425439 28 100.0 32 ............................ TACCTTAAAAACAGAATCAGAAATTTCATTTA 2425379 28 100.0 32 ............................ TGCATAGGCAAGTATTGTGCCAAAACCAGAAA 2425319 28 100.0 32 ............................ TTAAAGTTTTTTAAGACGTGAGGGAATTCCTT 2425259 28 100.0 32 ............................ GTTGCTCGCCTTGTCGCGGGCGCTGGTCTGGC 2425199 28 100.0 32 ............................ TCACTAAAAACATGCGGGCAGACATCATTGCA 2425139 28 100.0 32 ............................ TTGGTTCGGTTGGTGCTTTGATGCAGATTGCC 2425079 28 100.0 32 ............................ AGCAACAGCAACTGCATTCCTAGCCATGCCAG 2425019 28 100.0 32 ............................ AAATCAGCGACTTGCCGAAAATGGGCGCGATT 2424959 28 100.0 32 ............................ GCCGGGAATACACTATTGGCTGCACCGGCTAC 2424899 28 100.0 32 ............................ AGTTCCGGCACCGAACGCACCTCACTTAAACG 2424839 28 100.0 32 ............................ ATAACTGTTGGTATTCAAAGAAATGCTTTTCA 2424779 28 100.0 32 ............................ TATGCATCCTGACAACCTAGAGGTGATCCTTC 2424719 28 100.0 32 ............................ GTTAGCTCATCACCCATCTCACGACTATCCAC 2424659 28 100.0 33 ............................ CAAGTCCAGTTGTGCTATCTGCTGAGGGTGGTT 2424598 28 100.0 32 ............................ TTGGATATGCCATGTTGCACCCTTGATAGCGC 2424538 28 100.0 32 ............................ AGTTGCGTTTTGGCTTTAGCTCGCCTTTACCA 2424478 28 100.0 32 ............................ ATTTATCATCCCCTCAAAAAATTGCTTTATCT 2424418 28 100.0 32 ............................ GAGCATTGTACTTTGCCGTCTGCAAAGATGAT 2424358 28 100.0 32 ............................ ATGCTCGATGCTTGTGGCGCGCTTATGTCGTT 2424298 28 100.0 32 ............................ TAAGCTATATCAGAATCCCGCTTTTCCACTGA 2424238 28 100.0 32 ............................ TATTCATTTAATTAACAGAAAAATTCCTGATA 2424178 28 100.0 32 ............................ AATCACCGTTTTTTTAATCACAGTTTTACTCG 2424118 28 100.0 32 ............................ TGACATTTTCAGGGGTGGCAGGGTCTCAGGTA 2424058 28 100.0 32 ............................ TGATAGTCGCTTCTGCGGTCTATCGCTTTTTG 2423998 28 100.0 32 ............................ AAATCAGCAACGCCTAAATGGTCGCTTTTAAA 2423938 28 100.0 32 ............................ ACTTGTGCCGTTTGCGGTTAGGGATTGCCATT 2423878 28 100.0 32 ............................ TGACTGCCATCTGACTCAAACGCAAAAACCTG 2423818 28 100.0 32 ............................ AGGAAGCTAGTTCTTTTAAAGCTTGCCGATAA 2423758 28 100.0 32 ............................ ATGTCTGCCCGTCCCCCAAAGAGTGCGTTTTA 2423698 28 100.0 32 ............................ ACAAGATGACGATGGATGGACGATTTTATCTA 2423638 28 100.0 32 ............................ AGCACGTTGCGTTGCTGCGCCACCACCCATTT 2423578 28 100.0 32 ............................ AGACAGGCGCATCGGTCGCTGAGATTCGCGAC 2423518 28 100.0 32 ............................ TGTCATAATAACCGCAATGGTAATAAAGGTTT 2423458 28 100.0 32 ............................ AGACTATCTATCCGATTTCCGGTAGCAATGGC 2423398 28 100.0 32 ............................ ATAATCTGATCAAGCCAATTCATCGCCGGGTC 2423338 28 100.0 32 ............................ AGGTAGTGATTACAACTGCTTTCCTGGTGATT 2423278 28 100.0 32 ............................ AAAGGTGCGGTAGAAAGCATTGAGGCAATGGT 2423218 28 100.0 32 ............................ TTAAGCGCTTCACGTATTTGCTGTCTTACATG 2423158 28 100.0 32 ............................ GTCACCCGGTTTTTGTAACCCGCCTTACAGCG 2423098 28 100.0 32 ............................ CGAAAGCCGTGCATTTCCCAACGGCGGATCAA 2423038 28 100.0 32 ............................ TGATGCGGGGTGAGAATTTCTCACCACACATC 2422978 28 100.0 32 ............................ CAGTGGGAAACCAATATTTACAACTTCCGATC 2422918 28 100.0 32 ............................ GAATGGCGGTCAATTAAAAGCCAAAATGCAGA 2422858 28 100.0 32 ............................ ACAATAATTCCCATCGAATGGGCTGGTAGTCC 2422798 28 100.0 32 ............................ AATACCACCACTAAAACTCACTACATGCTTCA 2422738 28 100.0 33 ............................ CGTTAAATCCTTCACAGTAGGCAACGCAACGTA 2422677 28 100.0 32 ............................ AGTAACGCAATGCGTAAAGCAGGCGACCTTTT 2422617 28 100.0 32 ............................ TTCATTGCTTCTTGCGCTGTTTGTAATTTTTC 2422557 28 100.0 32 ............................ AGCGACGGATTAGTAAACGTCGTTACTGGTCT 2422497 28 100.0 32 ............................ ACACAATGCATTAATTAATAAAATGCCAGACT 2422437 28 100.0 32 ............................ CATATCTGAGAGAAAGTTTTCAAAATGCATCC 2422377 28 100.0 32 ............................ TTAGTTTCAGCGACTTCTGAAGAAGAATGAAA 2422317 28 100.0 32 ............................ TAATTCAATTGCATACACGCTTATCTATAGAA 2422257 28 100.0 32 ............................ ACAAATTAATGATGATGCAAGCAGACCGTATG 2422197 28 100.0 32 ............................ ACCACCGGATCGCGATGGACCGTAAGTGAATC 2422137 28 100.0 32 ............................ ATACAGAACGTCATTGATTGGCACAAAAACGG 2422077 28 100.0 32 ............................ TCACCACGTGTACCGTCGATAACCTTTCTGAT 2422017 28 100.0 32 ............................ CACGGCATGTAAGCTACGGTAGATGCTGGCTC 2421957 28 100.0 32 ............................ TTTTACATATGGTTTTATTAATTCACTCATCC 2421897 28 100.0 32 ............................ TGTGCGGTTAAAAACGCCTGACTGATTTCGGC 2421837 28 100.0 32 ............................ GTCAATGTATGCTGTTAAATGCAATAAACAAA 2421777 28 100.0 32 ............................ AGAAGATGTATTATCGTAAGAAGTTCCTGCCG 2421717 28 100.0 32 ............................ ATTAGTAGAGAATGAGCAACTGTTACGCATCT 2421657 28 100.0 32 ............................ AATCATTACGGTTGCCTGTGTATAACGGCTCA 2421597 28 100.0 32 ............................ AAATATTCTAGGCTGCTGAATTGTGTTTTAGG 2421537 28 100.0 32 ............................ AAAAGCAAAAGGCATTGGTGAGGCGCCCGTTA 2421477 28 100.0 32 ............................ AGGATAATATAATCGCCCGATGTATCGCTAGG 2421417 28 100.0 32 ............................ AGTCATTAACAAAGTGGCCGCCTGAACTGCAT 2421357 28 100.0 32 ............................ TTTCGTATGAAGACGACAGAACCAATATATTT 2421297 28 100.0 33 ............................ TCTGTCACTGAAACCACAACAACGACAGCTACA 2421236 28 100.0 32 ............................ GTCATGACACGCACAGAACGCAATATAAACAG 2421176 28 100.0 32 ............................ ACATTCAAATGCAGCTTTTTTTTCATCACCTT 2421116 28 100.0 32 ............................ TTGAGTTGCAACGTATAGGTCTAGACCTGCAT 2421056 28 100.0 32 ............................ GGTCATCAGTGATTTGGCTGTTGGCTTTTATG 2420996 28 100.0 32 ............................ AATCTTTACGTAACTCAGAAATTTGATGCGCA 2420936 28 100.0 32 ............................ ATCACCCCGGATGATGTCAGTGGCAACGGCAC 2420876 28 100.0 32 ............................ ACCAAGCGGGTTATTGGTAACCATCCAAGGCC 2420816 28 100.0 32 ............................ TTTAATGACTGCAATCGCAATCGCATTCACCA 2420756 28 100.0 32 ............................ ATCACATGCCCGTCAAAATACCACGCGACCAG 2420696 28 100.0 32 ............................ TGCTTTCTCGTAGCTCCGAGTTCAGGTAACTG 2420636 27 82.1 0 ...T.........T.......A.-...G | ========== ====== ====== ====== ============================ ================================= ================== 116 28 99.8 32 GTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : CTTTTGAAGCGTGGCAGTATCTCTGAAGATGAAATCCAACAATACAAAGCTAAAATGTTTGCCCGAGGGTTAGATAACCCATATTTAGAGTTGGTGAGCAGTTCAACCGGACAAAAGCATCGACGCTATATCGAATTCGGTGAACTTAAAGGTGAGGCTACGCACGGCCAGTTTGACTGCTTTGGGCTTTCGAAAAGTGCAACTGTTCCTTGGTTCTGAAAGTGATTCTAAGTAAGGAGAATGCCGAAAAGCAAACTGCAAATTTCTAAAGTCTTGGATTTAAAGTCATCGAATTCGATGGCTTTAAAATGGTGTCCGGCATCAGTGGACCGCTACAGTCAGATTCTAAATAGGTTTTATCAAAATTTAACCATTCTTTTTAGTTCTTTAAAAAAACATTTAATTATTAATAAGTTACATGTAATCGTTTTATCATTCATAAAACCTGAAGAATGAGAGTAAATGATTGTTGTAACTTATTTTTTTTGCGTTAAACTTCA # Right flank : TCATCATTAAAATAATGAGAAGCTTGTTGTTACAACTTTTAGGTATATGTAAGAGCAATATTCTGAAGCCCTCACTCCCGATGTGCCGGGCGGGCAGTGCGTTGATGCTTTTGGGGCACATCCCAGCATCTGACACCAAATTACATTTTAAACTGCCAGGCTAGTTGATGTCAGTATTCATGAGCAATCGATGTTGTGGATAGAAAATATGTATTTTTGGTGAGGGGCGGGGCGATAGAGCTAATTATTTAATCCCGTCGATTTCGACGGGTTTAAATCTGCATTGAGTTTGCTATTTAACTGATAGTGATTTATCAGCTAATGGGCTTTGGGTCTGTTTGGAGACAAAAAAGCCGGGAAGAATCCCGGCTTTTTGATTGCTTTGATACGGATTTACTTGATTGGCAAGAAATACAATTTTCCGGCTTTCATATCGGGCATCAGAATATGTTTGCCATCGGCTGATAAAGCAATATCAGCTGCGGCTTCATACTCGTCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //