Array 1 1616378-1610907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNOA010000001.1 Bifidobacterium pseudocatenulatum strain BSD2780061689_150309_E11 NODE_1_length_1697059_cov_80.1119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1616377 33 100.0 34 ................................. TTTTACTGACGTTGAGGATATGGTTTACACGTTT 1616310 33 100.0 34 ................................. TCGGTGGTCGAATTGTCTATTCCAAGGTAGTTGG 1616243 33 100.0 34 ................................. AGGCAGATTTAAGTTTCCCCACATGGAACCAAGG 1616176 33 100.0 34 ................................. ACCACCAATGCCGCAACCACCTCACAGGCTAACG 1616109 33 100.0 34 ................................. TTTTACTGACGTTGAGGATATGGTTTACACGTTT 1616042 33 100.0 34 ................................. TCGGTGGTCGAATTGTCTATTCCAAGGTAGTTGG 1615975 33 100.0 34 ................................. AGGCAGATTTAAGTTTCCCCACATGGAACCAAGG 1615908 33 100.0 35 ................................. AGAATCAGAATCAAGTAGTTTACGTGGGTTAGCAA 1615840 33 100.0 35 ................................. TATCATCATCGTACTCCTGCGGATAGCCCACGTAA 1615772 33 100.0 34 ................................. AGCCTTGCATAATGTGAGGGTGCATCATGCCTAG 1615705 33 100.0 34 ................................. CTCGTGCCGTCAATCGGATTGACTGGGGAGTTGG 1615638 33 100.0 33 ................................. ATACTCTCGGTAAAGAATGCGACAATATCAGCG 1615572 33 100.0 35 ................................. CATGCTTGCACCGCCCGCCGTGATCTTACATAAAC 1615504 33 100.0 33 ................................. GATGAACGCGCGTTTCTGCGCTGCCGATAGTTG 1615438 33 100.0 35 ................................. AGGGTTAATCATGTAGACGGTGAGTTTGCCGCCTG 1615370 33 100.0 35 ................................. TCAGTGTCGTCCATAATCACCTCTTAAGGTAGATG 1615302 33 100.0 33 ................................. CTGTTCGGTGATATCCGCTTTATTGGCTTGCGC 1615236 33 100.0 35 ................................. CCGGTTTATCATGATGTCGGACGTAATGAGATCTA 1615168 33 100.0 34 ................................. ATTGCCAATATTAAGCCGCTGAAGATGAATGCTA 1615101 33 100.0 32 ................................. GTCCAGCGTCTTGCGTCCGGCCTTGACCAGAC 1615036 33 100.0 35 ................................. TTCTGCGCACGCTCCAAACGGGCGTAATCACGCAG 1614968 33 100.0 35 ................................. AAACCGCGCGAATCCGTCACGGTAAAGACCAGTGG 1614900 33 100.0 32 ................................. TGATGGTGATGTGGTAGACGTCTTTTTCGGTG 1614835 33 100.0 35 ................................. CAGAAGGTGTTCCGTGCCGTTGATTCCGCCGCTCC 1614767 33 100.0 35 ................................. AACAAGAAGCACGTCAACGCCACCATTGACGCGAC 1614699 33 100.0 34 ................................. TTTGATGCCGTACCGTTTTGCGGCAAAAGTTTTG 1614632 33 100.0 33 ................................. GAGACACACGAACCCCCCGCAATAGAGTTTGTA 1614566 33 100.0 38 ................................. AGTGGGAAAATCGGTTCGGGCAGTTGGGATGCTGTTGA 1614495 33 100.0 34 ................................. TTCGGTGCCGGGCGGACGTGTCCGTGGGTCACAG 1614428 33 100.0 36 ................................. AAAGTCAGATCGGTACCCATCTGCGCACTCTGGTTG 1614359 33 100.0 35 ................................. CGATTACGGCGGTTTCCAAGCACGAATGGTTGGCC 1614291 33 100.0 36 ................................. ATATCCGCGAACTGCATGGTCTGCTGATTGCTCAAG 1614222 33 100.0 33 ................................. TTCAAGCAGGCTGGACTTAAGGCCGATAGCAAG 1614156 33 100.0 34 ................................. GATTGACTCGCCGTCACCGTCGTTGTCGCCGTCA 1614089 33 100.0 36 ................................. GGACTGGGTGACGCCGCGACCGTCGCGGCCAGCCTG 1614020 33 100.0 34 ................................. GCTTTTCCTCCCACCGTGCGCATAACCCGCAAGG 1613953 33 100.0 34 ................................. TCAGAAAGTCTCTATGAATGAGGAGACTTTTTAC 1613886 33 100.0 35 ................................. GACAACGATGATGAATGGTGTGCGCAATGCGGCAC 1613818 33 100.0 34 ................................. TTTGCTCGACGGATAATCCCAGCGCAGGCTCTCT 1613751 33 100.0 34 ................................. TCCATGCGCAATGGGTATGTTGAGGAGGGCTTGG 1613684 33 100.0 34 ................................. CGCTGGATGCATGTGTACGTATCCGTGACAGCCT 1613617 33 100.0 33 ................................. AGCCCGTAGACACTGCGGTTGTCGAGCAAAAAG 1613551 33 100.0 36 ................................. ACCTCCTAAACGATGGGGGCGTAACGTCATGACCAC 1613482 33 100.0 34 ................................. ATATGATGTGCCTGGCAAGATCACCGAAGTCCCG 1613415 33 100.0 35 ................................. TCTCCAGCCTTGATACCGATTCATACCAAGGATGG 1613347 33 100.0 34 ................................. AGTATCATTATAGCGGGTCGTGTCCAGTCTGTCA 1613280 33 100.0 33 ................................. AAGTTCGTGACCTACGACAGCACGGATTACACC 1613214 33 100.0 34 ................................. GTATGATTGTTGCACGGTTTTCGATAGTCCACAA 1613147 33 100.0 34 ................................. TGGACTGGCGCGGCGTCTACCGCCAACGTGGTGG 1613080 33 100.0 34 ................................. TAATAGGGCGTGGGGTAACTACGATTACTTGGCT 1613013 33 100.0 35 ................................. AAACTTTGCAACGTACCTTGGGACATGGGCTATAG 1612945 33 100.0 34 ................................. TATTCTAGTCTGATAGATGCACTACGGCTTTGCG 1612878 33 100.0 32 ................................. ACCCTCAAAGCGCTCATCAAAAAAGCCAAGAG 1612813 33 100.0 34 ................................. ACAATGAGGAGCCACGTATCACCCCGCGCGACGT 1612746 33 100.0 32 ................................. CACAACGGCCGATGCGACTGCAACGTCGTCCC 1612681 33 100.0 32 ................................. TGTTTTGTCCCGAATAGCTTATGATCGCTACG 1612616 33 100.0 35 ................................. TCCTGTTACGAAGTCAAGTCCTGCATGGCGGATTT 1612548 33 100.0 33 ................................. ACCCTCCATCCGGCAGGCAGCAACCCGCAGTTC 1612482 33 100.0 34 ................................. TCGGAACATGGACAACAGGCCGTCGAGACAGATC 1612415 33 100.0 34 ................................. CAGTACGTGAAATTGCTCATGGCCATAAGGTTTG 1612348 33 100.0 35 ................................. TGGTGGCAGGGTCCAGAGAATGTTGGATTCGGCCA 1612280 33 100.0 33 ................................. CATCACGCCGGAAAACGTTTCGCGTGGCGACTT 1612214 33 100.0 33 ................................. ATGTCGAGCACGTCGTTTTTGTCGGCCGACTTC 1612148 33 100.0 35 ................................. AGCTACGCCAAGTGGACGCCAAACACAAAATTTAA 1612080 33 100.0 33 ................................. GATGCCAATAGGCGCGTCCAGCCCCTCCAATAT 1612014 33 100.0 33 ................................. AAGCATTTCCCGCTCAAGCCTCCTACGGCCTCC 1611948 33 100.0 33 ................................. CATTCGATACCGATGGGATATCCCGAGTCGGCC 1611882 33 100.0 37 ................................. CACGCCTAAGTTTACGTTGCGCGTCATGGAGTACGGT 1611812 33 100.0 33 ................................. TACGTGAGTACGATCAGCGCGGCTTGTGCAAGA 1611746 33 100.0 34 ................................. TCGTGCCACGGCGGTAATCGCACGCCACGTGAGC 1611679 33 100.0 34 ................................. ATGCTGTCAGCCTTGTCTATCGTCTCCGAGGCGG 1611612 33 100.0 36 ................................. CCACCAGCCGACAGTCCAACGAAACAAACCAATTAG 1611543 33 100.0 37 ................................. TGCACGTCCCCGCCGGTCAATTGCGGTGGCGTGCCGG 1611473 33 100.0 34 ................................. ATCGTGCGTGGTTTCTGGCGCGATCAGGCGTATG 1611406 33 100.0 34 ................................. GTGCATGTGGTCGGCCCCGCATGGAACCTTCCAT 1611339 33 100.0 32 ................................. ATCAGCCGCCAGCAGAAGGCCAAGGAAGCCGC 1611274 33 100.0 34 ................................. TCCAAGATGAGGGCTGACGGCACTCTCTCCACAA 1611207 33 100.0 34 ................................. ATACCATCCTCGTTAAGGGTGGCGTGGTCGAACA 1611140 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 1611072 33 100.0 34 ................................. ACGATTGCCATGGCGCTGCCCAGGATCATCGTCG 1611005 33 100.0 33 ................................. AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 1610939 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 82 33 100.0 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CATGGAGAGCGTGGATTGAAATATGGGCTTGCGGCAGTGCTGGCAGTCGGTCAAAGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATTACGTGTCCCGAAGAGTACCGATTGACGGTCAAGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATCGGTAATGTCCGCACTATCGTACGTATAAATGTACGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATTTCGAGACGGTCGACGTTGAGCCAGTCGAGTAGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATACCACCAATGCCGCAACCACCTCACAGGCTAACGGTCGCTCTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATACCACCAATGCCGCAACCACCTCACAGGCTAACG # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGCGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1619251-1616589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNOA010000001.1 Bifidobacterium pseudocatenulatum strain BSD2780061689_150309_E11 NODE_1_length_1697059_cov_80.1119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 1619250 33 100.0 34 ................................. CAATAGTACACTTTGCCGGTATCAGTGTTGTTGA 1619183 33 100.0 33 ................................. ATACACTTGTTCGCACCGAGCCGACACGGGATA 1619117 33 100.0 34 ................................. ATGGCCGTCAACAACGGCTCCGCCCTCTCTCTCG 1619050 33 100.0 32 ................................. ATTACCACGGGTAGGCGTCCCTACTCGAACAA 1618985 33 100.0 33 ................................. GCTTGAAGGTCTGTTTTTGGGTATGTGGGGCAG 1618919 33 100.0 34 ................................. TTTGCAACTTCCCCGAGCAAAACATGTCCCGATG 1618852 33 100.0 34 ................................. GAGATGCATATTGTCATAATCCCCCCAAAACAGT 1618785 33 100.0 35 ................................. TCACATCCTGCTATAACGCGGCCGAGGTTGACCTT 1618717 33 100.0 34 ................................. ACCATGCCAACCATCGTGCAATCCAAGTCGAACG 1618650 33 100.0 37 ................................. ACTACAAACACCAACACCATGGCCACACTCACAACAA 1618580 33 100.0 36 ................................. GTGTCCACCACTGCTTCGGGGAAATGATAGATCATG 1618511 33 100.0 33 ................................. GTATCTGACGGCGCTTACCGCTTGACAATCTGG 1618445 33 100.0 35 ................................. AGCCGGTAGCCACGAATTACTCGCACCCTCAAATC 1618377 33 100.0 35 ................................. AATATTGACAAGGTCAACGTCCCCTACCGTATTAT 1618309 33 100.0 35 ................................. ATCCAGTCAAGCGAGCGCGCACTACGGTATCGGAG 1618241 33 100.0 40 ................................. AAAGCAAAGAGTGTTGTAAACGTTGCCCCCCGGCGCGGTG 1618168 33 100.0 33 ................................. ACCCTCACCAAGACCGAGGTGCAGCGCGTCCGC 1618102 33 100.0 36 ................................. GTCAGCGCGTGCAGGAGGGCGGGCGTGGAGCCTCTG 1618033 33 100.0 33 ................................. ATTTCGCGTCCTCGCTTTGGTTAGGCACCTCGG 1617967 33 100.0 34 ................................. ATCGAGATGGCCATCGGAACGCCATTGACCTCGA 1617900 33 100.0 35 ................................. CTTGGCGGCTTTGTCCAGCGGCCAGTCGGCGGTGA 1617832 33 100.0 35 ................................. TCGGATTTGGATCTGCAATTGCGTTAGAATTTGGT 1617764 33 100.0 33 ................................. TTGATAGTTAGAGAGAAGAAGATTTGGAATCCG 1617698 33 100.0 37 ................................. CGCGACCATCTTGGCCGTCCTCCGCGAAACCAGTCTG 1617628 33 100.0 36 ................................. ATTTCGCGTCCTCGCTTTGGTTAGGCACCTCGGAAG 1617559 33 100.0 36 ................................. AAAACTATCGAAGAAAAGGAGCAATAATCATGGGAG 1617490 33 100.0 34 ................................. CTCGTCCTTAACCGTCAGGAGATCGAGCAGGCGA 1617423 33 100.0 33 ................................. AACGTCCGGTGGTTCAATCCACTCACGCATCAT 1617357 33 100.0 36 ................................. AGAAAACCCAAATGGGCATTAACAATGCTTACGGTC 1617288 33 100.0 33 ................................. CATTTGGATAAGACCACGAGCATGCTGGTGCAG 1617222 33 100.0 32 ................................. CTGCAGTGCGCGAGGATGAGGTCTCGTTTCGA 1617157 33 100.0 32 ................................. TGCACGATGTCGTCGCCTACGGAGATCTCCCA 1617092 33 100.0 37 ................................. TTGCCGACCACGATAACTGTCCCGACATGCGGTGTAG 1617022 33 100.0 32 ................................. TTGTTGTGTTTCACGTGCAGCAAACCGCACAA 1616957 33 100.0 36 ................................. GGAGGTGAAGGCACGCTGAATCGTCTTGTCATCCGT 1616888 33 100.0 34 ................................. ATGGGCTTGCGGCAGTGCTGGCAGTCGGTCAAAG 1616821 33 100.0 33 ................................. TACGTGTCCCGAAGAGTACCGATTGACGGTCAA 1616755 33 100.0 36 ................................. CGGTAATGTCCGCACTATCGTACGTATAAATGTACG 1616686 33 100.0 32 ................................. TTCGAGACGGTCGACGTTGAGCCAGTCGAGTA 1616621 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================== ================== 40 33 100.0 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : ACCACCAATGCCGCAACCACCTCACAGGCTAACGGTCGCTCTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATACCACCAATGCCGCAACCACCTCACAGGCTAACGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATTTTTACTGACGTTGAGGATATGGTTTACACGTTTGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATTCGGTGGTCGAATTGTCTATTCCAAGGTAGTTGGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATAGGCAGATTTAAGTTTCCCCACATGGAACCAAGGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATACCACCAATGCCGCAACCACCTCACAGGCTAACGGTCGCTCTCCTCATGGAGAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //