Array 1 7343-5389 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCR01000005.1 Listeria monocytogenes strain ICDC_LM0143 LM0143Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7342 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7276 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7210 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7144 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7078 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7012 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 6946 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 6880 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 6813 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 6747 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 6681 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 6615 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 6549 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 6483 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6417 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6351 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6285 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6219 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6153 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6087 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6021 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 5955 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 5889 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 5823 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 5757 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 5691 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 5625 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 5559 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 5493 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5427 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5392,5395,5400] ========== ====== ====== ====== ==================================== =============================== ================== 30 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //