Array 1 133805-134373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPI010000007.1 Serratia proteamaculans strain C7002 run0228_C7002_S34_L005_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 133805 28 100.0 32 ............................ AACAGATAGCGGAGATAGCCAAGAAGGCTGCA 133865 28 100.0 32 ............................ ACTAACAAACTCACCTTTCGACAGCTACTCGA 133925 28 100.0 33 ............................ ATCCCTGCACGCAATTGTGCAAAGGTATTTTCA 133986 28 100.0 32 ............................ GTCGTACTGCCGAAGAAAGCGCGGAAGGTATA 134046 28 100.0 32 ............................ AATGCAGCCCGCGATTGCTTCAGGATAGTGTG 134106 28 100.0 32 ............................ TGCTCAGCTATCACTGGCTGGTTCATGCGCTC 134166 28 100.0 32 ............................ TACAGCCATCATTGCGCGTGAAAATCCGGGAA 134226 28 100.0 32 ............................ TATCATGAACAAACCAAGCTGGGCACGTTGAG 134286 28 100.0 32 ............................ TACCGCGTCGCAATGCTGGATCAAACTGTAAG 134346 28 82.1 0 ....................T...AGTC | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCGAGCCGTTTAACCGGCTTTAACCTCAACGTCCGGCAGTAAATAATCCAACGAAAGAGGCGGGTGACTCACCAGCCTCTCTTTTTGCATTTTGCTCAGTTGCTTGACCCGATATTCCAGCCTCAGTGCCCTTGAACGATCCCCTGCCTGGCAGTGAAACGCCAGCACCAGCTCTCCTTTACCTCGCAGTGCCTTCGCACCCTTACCGGCCTGATGTTGCGCCAGCCGCCGAGCCACGTCGGTGGTGATGCCGGTGTACAGCATGCCGCTGGGCATGCGCAGCATATAGAGGTGCCAGACACTGGTGTTTGTCATATAAGTCCCTGTAAATAATTGAGCGTTACTATAGGCAACCTAACTCCATCGCTGAACCTTTTTTTTGCGGTGTAATTTAATTTATTGATTTTAAATGTTTTTAATTGAGTGTGGGAAAAAGCCTTTTTGCACCAATCGTGAGGTTACTCTTCAACAATCAGCTAATTAGCGCTAATCTCCAACA # Right flank : CCTATCAATAATGATATTTTGTCGGCTGGTAACGGTTTTCCCATTGTTGGTATGATAAAAACTTAAGTTGCTAGGTTAGTTGAAGATATATTTGCTCTATTGACCAAGGTGGAATCATTTAAATTATGGATAATACAAGATATGAGTAACTCATTCTCGCCGTCCGATTTAAAAACTATCCTGCATTCCAAAAGAGCCAATCTCTATTACCTGCAATATTGCCGTGTCTTAGTCAACGGTGGGCGAGTTGAGTATGTTACCGATGAAGGAAAACAATCTCTTTATTGGAATATCCCCATTGCTAATACCTCTGTTGTCATGCTCGGGACAGGTACTTCAATCACGCAAGCCGCAATGCGCGAATTTGCCAAGGCGGGGGTATTAGTTGGTTTCTGTGGTGGCGCTGGGACTCCTTTATACGCGGGCAATGAAGTGGAGGTTGCCGCTTCCTGGTTATGCTCGCAGAGTGAATATCGACCAACAGAGTATTTGCAACATTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 143134-144362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPI010000007.1 Serratia proteamaculans strain C7002 run0228_C7002_S34_L005_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 143134 28 100.0 32 ............................ AAACAGGCAGCTATCGGCCACTGGCCGAAAAT 143194 28 100.0 32 ............................ AAGCTGGCTACGCCGGTGCGGTTGCCTCCACT 143254 28 100.0 32 ............................ AGTAAAAGCGACAAAGAAAAGCTTAACCGGAT 143314 28 100.0 32 ............................ CGGTGGGGCGGTCAAAGCCGCGACCCAGAAAC 143374 28 100.0 32 ............................ ACTCGCATATGTACCGTGATAAGACGATGGAT 143434 28 100.0 32 ............................ ACACATTATGCGCCGCGCCGGCGGCACTGCAG 143494 28 100.0 32 ............................ ATCCGATCCCGACGTGGTGATAAGTCGAAAGA 143554 28 100.0 32 ............................ AGCAAGGCCAGGAAGAATTGCTTCCAGTACGA 143614 28 100.0 32 ............................ TTTCGAGTTAATCAAATGCATTACCGCGCCAA 143674 28 100.0 32 ............................ TAACCATCATGCAGTTGGTCGACATCATCGGC 143734 28 100.0 33 ............................ CACCATTGCGGCCCAGTCGTCCAACACGTGTGA 143795 28 100.0 32 ............................ TCACGCGTGGCGTTGGCCTCTGGTATGCCCAC 143855 28 100.0 32 ............................ CACTGGTTATTGATGAGTTCAGGGAGGTTGAA 143915 28 100.0 32 ............................ AGGTGAACAAGCGTGACAGCTACGTTGTGGTT 143975 28 100.0 32 ............................ ACCGTGGTGTGCATCACGCTGTAATAGCCTTT 144035 28 100.0 32 ............................ CGGACGCAACGCTGACAGAGAAAGGCTTTACG 144095 28 100.0 32 ............................ TCTGCATCACGCGCCTGCAGGTGCTTTGTGTG 144155 28 100.0 32 ............................ TCCTGCAACTCGTCCAGCCACGCCTGCTCTTT 144215 28 100.0 32 ............................ TGATGGATGCTGATATCCAGTTCATGTGGGCA 144275 28 100.0 32 ............................ CAGTCAACACCACCGAAGCGAGAGCGACGGGG 144335 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTTGGCTGAGCTTCAGGAAAGCGGTTGGTTGAAAGGGTTGCGGGACTATACCGGCATCGGCCCCCTTCAGGCTGTTCCGACTGGGGCGCAACACCGAACGGTCAGCCGGGTTCAGGTCAAGAGCAGTGCAGAACGTTTGCGCCGCAGATCGGTCAGTAAAGGTTGGTTGACCGATGCACAGGCCAGGGAAAAGATCCCGATGGCCAATGAACAACGCTCATCTCTGCCGTTTATTACGCTAAAGAGCCTATCTACGGGGCAAAGTTTTCGCCTGTTTCTGAAACAAGGGGAGCTGCAGGAAGTGCCGATAGAAGGAAGTTTCAGCTTTTATGGTTTGAGCGCATCTGCCACAGTGCCTTGGTTCTGACCCTTTTTTTCGGGGCGGAGATAACTGATTGATTTTATTATCTCTGCCCTATGCCTGAAAAATTAGGGTTAAAGCGCGAAATAACTACCATTTTCTTTAAGAGTCAGTTTGTTACAGGTTTTTTTGTACA # Right flank : AAGCCGGTCTGGATAATAATATGCAGCAACTTTGATAGCCAGGGACGGAATATGATGGCATGTTCTCCAGCGCAATCCCATCCCCGGCGGTCAATGTGTTACTGCTGTGAGCCTTTTTTCCCCACCATTTCGAAACGCGGTGAAACTATGCCGTACAGCGTCCAACCGAGGAAGGTGGCGATAGCGCCCCACATCATCGCTTCCTCACCTGAACTGTAGAGGGCATAGAAACTGTACAATGCCCCAATGCCGGCAATGATGTTGGCAATTCGCGCTTTTTTCTCCGGTACTTTCGCCACTTTCTGAATGATGATCAGCGCCGCCATCGACAGAATATAAGGGATGATATTGGTCACCACCGCCAGATTCACCAGCACGTTGAACTGTTTATTCAGCGACGGGCTGATGGTCATCAGCGACAGCACGCTCTGGATCACTACTATGGTCAGCATGCCTTTGACCGGTGCATCGGCCTTGCTGAGTTTGGAGAAAATTTTCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //