Array 1 1039-198 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPR01000642.1 Streptomyces prasinus strain NRRL B-12521 B12521_contig_642, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1038 36 88.9 37 C............C......GA.............. ACCCTTACCTCCCCCAACGGCGGCCGCAGTGCCCACG 965 36 91.7 36 ...........T.C......G............... AAGTCGCCGTGGTGGAAGGAGTTCAAGGCTGATCTC 893 36 86.1 36 .........T...C......GA.............T CCGTTCGATGTGCGGGTGGGTAGCGAGGTGATGACC 821 35 80.6 38 ...T.A...-.........TGA........T..... GGCGGGAGTCTCCTCCCACCACGCCGGACCCGACGGGC 748 36 91.7 38 ....................GC.A............ GTCCGCATCGCCCACCGGCTCTACCCGGCCAGCTCCAC 674 36 91.7 38 ....................GC.A............ GTCCGCATCGCCCACCGGCTCTACCCGGCCAGCTCCAC 600 36 91.7 36 .............C......GA.............. GGCCCCGGCTTGCCGGTGGTGGTGTCCGCGGCCACC 528 36 94.4 37 ....................GA.............. GCGAGGAGCCCGGCGTCGACCAGCGCGGCCTCCACCC 455 36 88.9 38 .............C......GAT............. ACCCCGGCGTCGGTGACGTCGATGACCTGCGCCGAGAG 381 36 86.1 38 .........T...C......GAT............. GGCGGGAGCCCCGCAGACTACGCCATGGAACGCGTCGC 307 36 100.0 38 .................................... ATCGAGACGACCCAGGTAACCCAGGTCGATAACGACAC 233 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 91.0 37 TGGCGGTCGCCCTTCGGGGCAGCCGAGGATCGCAAC # Left flank : CGGCGACGGGCTGGCCGATCCCGACGATCTGGACGTCCTCCGCTCGTACTACCAGCACCGCTACCGCCTTCAGGCAGGACAGCACTCCGAAGACCCCAACGGAGCCACTGGAGAGGTCATTGAGGCGCTGCGAGCAAAGCTGCACTACCCGGAGGTCGCGCGCAGAATGCGGATCGTCGACAACGAACACTCCGTGGCCGTGGTCGTCATCCGCCCCCGGCTCGCAGAAGAAACCCGACGGGCCGCCCAGAAGGCCGTCGACCAGCTCCGCCGCGGCCTGCCGACGCCGGCGACCTACCGCACCCTGCAGGACCACATGGCATCCATCCCACAACGAGAACTGGAGACAGCGATCAATACCGGACACGCCGCCGAAATCGCCGGTGACCTATACGAATGGACAGGCCCCTACCACCCACAACGAGGAATCGAACCCGCCCCGTAGTGAAATCGGCAGCAGCCGAAGGCCCCACCGATCGATACAGTGTTCCGGGACAAAG # Right flank : CATCGAGACGACCCAGGTAACCCAGGTCGATAACGACACTTGAAGTTCCCCCTTGAGCGTGGACAGCGGGTGGTTACGCTGCGGGGGCAAGAGCTTGTGCTGTCAGGGCCCGTGTTTCGAGTGGGGTGACGTAGCCGTAGACGGGATGCTTCCGCAGGCGAGTGCGGTTGTATTCGACCTCGATGAAGTGGAAGACAT # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTCGCCCTTCGGGGCAGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55150-53732 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPR01000084.1 Streptomyces prasinus strain NRRL B-12521 B12521_contig_84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 55149 35 88.9 37 .A............C...-..G.............. GAATTCTGGACCAATAAACCGACAAGCATGGTTCAGG 55077 36 86.1 40 ......C..T...TC......G.............. GGCACCAAAGCTGAAGAACTGGGAGATGCGTTGTTCGCGC 55001 36 91.7 36 ..............C............A...A.... TCCTGCTGCCGGTAGATGCTGACTTCGGCGGCTTCC 54929 36 88.9 36 ....A........T...T.T................ AACGCAGCGAGGCATATCGAGTTGGGCTCCAGCGCC 54857 36 83.3 36 ...T.........TCC.A.T................ CCGATCAGCATCTACGCGCCGGGCGCGTACCAGTCG 54785 36 91.7 38 ..........T...C......G.............. GACAGCGACGGGGCGTACGAAGAGGACGTCATGCAGCG 54711 36 91.7 37 .............TC...A................. CAGCCCGCCTCGGAACCGAACGTAGAGGACGCCTCGC 54638 36 86.1 36 ............C.CA.....G....A......... AATCTTGATCCCAAGCAGGTCACCATTGCAGCCTTG 54566 36 88.9 35 .A.......T....C...A................. GTCGGGTTCGGTCTGGACTGGTCGACGGAGAAGCA 54495 35 80.6 37 ..............C...TA-.T..G.....A.... CTCATCTACCCAGCTGGCTTTCTGGTCATCGGTCGTA 54423 36 91.7 36 .C.........T..C..................... CACGAGCTCACCCGCGAGTTCGCCGAAGTCGACAAC 54351 36 94.4 37 ..............C................A.... ATGCCCGGCAAGTACGACAGCGGCGGTTACCTGCAGC 54278 36 88.9 36 .......T......C....T.......A........ TCCAGGTACTTCGCCGTCCTGCCCGGCGCGTGCCGC 54206 36 100.0 36 .................................... AGCGCGGCTTCTACGTGTCCGAGGGAGAGATCACCG 54133 36 88.9 38 ...T...........AC..T................ CGCTCCACCAGCTCGACGAGCTGCTCAGCCAGCTCGAC 54059 36 86.1 38 .............TCAA..........A........ GGCGTCCTCACCAAAGCCGCGCAGACCCTGCCCTCGTC 53985 36 97.2 36 ............C....................... GTCACCCCTGACGGCCTGGAGGAGGCTCTTGAGGAC 53913 35 88.9 37 ..............C...-..G.....A........ GTGTCGAAGATCGGCGGCGACGACTCCGCGGCCGACC 53841 36 91.7 38 .A............C....T................ CACAACTGGTACGTCACCCGCAGCAGCGAATTGCCGAC 53767 36 91.7 0 A......................T....G....... | ========== ====== ====== ====== ==================================== ======================================== ================== 20 36 89.9 37 TGGCGGTCGCCCTCTGGGGCGACCGAGGATCGCAAC # Left flank : GCGACGACGAGCCGGGAGTCGGCATCGATGACGACCTGGTGGTTGGTGGAGTACCGGTAGTTCTTCGACTGCTCGGCGACGGCATGGTCGCGGGTGGGGACCAGGGTTCCGTCCACGATGAGCACGGTGTCCTTGCGGAACCGCTTGCGCTGCTGGAGCGCGAGCACGGGCCCGAGGTGGTCGATGATGCGGTCGGCCGCCGACTTGGACACCCCGAACAGCGGGGCCAGTTGGCGCAGGGTGAGGTTCGTCCGCCAGTACGCGGCGACCAGCAGGACCCGGTCCTCCAGCGGCAGGCTCCAGGGCCGGCCCTTGCGCACCGGATCCGCACCCTCACGCCGGAGCGCGGTGATCAGCCTGCCGAACTGGCGCGGGCTCAGCCCGGTGAACGGGGCTATCCAGGAGGGCTCCGACGCCGTGATCAGACCAGACACGGCAAGATCATCTCACCCGTGACCAGCAGTTACGGGACATCCCTTAGGGAGTGTGCTCAGTACCTC # Right flank : TCCGTGCCGAAGCCCTACAGCCTGCTGCATGCTGGCTGGCGGGCGCCCTGAAGTTCCCCGCTGCCCGGACAGTCTGATACTGGGAATGCACTGGTCGCGACCCTCGCAGTGACACCTGGATGCTGCGCCCTGCCTACAGGGTCGCTACGACGATGGGACAGCAGGAACCACCGGCTGTCCTTGTCACGGTCACCGACGCATCCCGCATCGGGGATGTCCTCGCCCGCCGCCCAAAAGCCTGGCCTGTGTGCTGGAGCAGCCTACGCGGTGCGGGTGGTGACGGCGCGACGGCCCGGTACGTCACCGTCCAGGAGGCGAAGGACTTCATCATCTCCACCGACTGAATCTGCCTGGTGATTGAGCAGATCTTCTTCGACGCCGAGGACGACGTGCTGCGGCACGCGGTAACCGTCTACTACGGCGGCCACCCCTACGTGATCAGCCATCAGCCCACGCCGGAAGAACCCGCGCGACGCGAGCAGCCGGCCCCGTGCTGCTTC # Questionable array : NO Score: 3.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.11, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTCGCCCTCTGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.40,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [23-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //