Array 1 1652931-1651568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMR010000001.1 Planktothrix agardhii 1031 1031_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1652930 36 100.0 47 .................................... GTCCTGTAATTCCGAACGCATCTGAAGGGCTTTATTGAGAATATCGA 1652847 36 100.0 43 .................................... TTGTGACGTCTATTTTGCAGTCAACAATATTTTGGCCTTCTTT 1652768 36 100.0 36 .................................... AGATTTAGGAATTCACCAAAGGTTAATCCAGTCATT 1652696 36 100.0 44 .................................... TGGCAGCGTTGTATGTCCAACATTAGTTAAAATATTATTTTCAA 1652616 36 100.0 34 .................................... ATCAGGCTGGCAATTTTTTTCATTTCATTATTTA 1652546 36 100.0 36 .................................... AGGAGCGACGGGGGCAGTGTGTAGGATTTCTAATGG 1652474 36 100.0 40 .................................... AAAACCGCCAATGAAACAGCGATGACTTTTAATGCAAAAT 1652398 36 100.0 43 .................................... GATTGATATAGCGGGTTTTTAGTCCCGAAGGCTTTGGTCACGG 1652319 36 100.0 44 .................................... ATCCAGTGGCAACTGTTGAAGGATTGACTTGATTGCAGCGTCCC 1652239 36 100.0 42 .................................... TTTTGACATCCTGGAAAGTGAGTATTTTAAGAGTTCACCAAG 1652161 36 100.0 40 .................................... TACAAATATCCAGGTTGTTAACACAGTCTCCACTTTTACT 1652085 36 100.0 46 .................................... TCCCATAATTATCAACAACCGATAGATGGATAGCATTTATACGAAA 1652003 36 100.0 41 .................................... ATAGGGTCTGCGCTCCATGCGTTCGGTCTTGTTCGCATTTC 1651926 36 100.0 42 .................................... CTTGGTAGACAAAGAGATTGTTTTTGCTCCGCCACACAAGAA TAAAGGGAT [1651906] 1651839 36 100.0 44 .................................... AACGAAATCAAGAAAAAAGCCCAAAAATTAAAAGCTGAAAACGA 1651759 36 100.0 45 .................................... TTAAAAGTAATGACCGCATAGGAGGTAAAAACATAGCAGTTCCCT 1651678 36 100.0 39 .................................... AGAAAATGTTTTTTTATCTATCGTAAATGTTTTGCAATA 1651603 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== =============================================== ================== 18 36 99.8 42 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : TGAAGGATACAAACCTTATGAAATTCGCTGATGTTATTTTACATTGTCGCTTATGATATTCCCTGTGATAAACGTCGTCGTAAAGTGGCAGAATTATTAGAAGGATATGGAAGGCGAGTTCAATATTCGGTGTTTGAATGTGTTTTGGCTCAGTCAAAATATATTGAGTTACAAAAACGCTTAAAGAAACAAGTAAATTTGGCTGAGGATAACCTGAGATTTTATCCGCTTTCTCGCCATACTTGGGGAAGTGTAGAAATTTGGGGTCAGGGGCCAGAGATTACTGAGTATCCGAGTTCAATAATTATTTGATGTTTTTTGCGAAGCTGAAGCTTGAATGCCTATGATATCGATTCTGCTGTTTATAGCCTCGCCTACCCTTCCTGTAAGGGTTCTGAGATTTTGATTCAGGAGTAAAATGTTGTTTCAGCCAACTGTTTTTATCAGTCTCGCAAACCTTATCTGGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : GCTAAGACAAAATTAGTGGAAGTTTTCTATTAATATGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGAGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAGGCAATTCCCCGGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCCACTCGACTCCGCAAATAGGAAAAAATTAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTCAACTTTTGAAAAACTCCAAACACCCTTTTAAAACTCAGATAAACTTAATTTCCCTACTCGCTAGGGAAATTAATTGATTCCGATCTCACTAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAACAGAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 3358749-3358565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMR010000001.1 Planktothrix agardhii 1031 1031_scaffold001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 3358748 38 94.7 34 G...................A................. TAAAGAGTCTGTGACGTACTAGAGGTTCCATTTA 3358676 38 100.0 36 ...................................... GGTGTCCAGTTTTTCTGTCCAAGTACCGTCACTTCG 3358602 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 98.2 36 CGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AATGTTAAACTGCTACCTTCTCTTTCTTAACGTTAGAGGTCTTTAACCTCTTAGAAATCGCAACAACTACATCAGCTAATTCCGTGCTAATCTTAGCAACTTCTGAATCTGAAAGTCTACCAGAGTCAATCATTAGAGCGATATCAGCTAAAGGCAATTGCTCAGTTTTAATACTTGACTGAGAAATCCGACGAGCAAAGTCTTTTTTAAAACCCGGCGCTAGTTGCTCACACATTTCTAGTATTTCACCGAATCTCGATAGAGGGATTCCGCATTTTCCTAATTTGACTTCTGAAATATAGGTTGAACTATTGCCAGCTTTAGCCGCCAAGTCTTTACCGCGAACATTAAGATCGTCCAGAGTTTCACCAAAAATTTTATGCAAGTCCATTTGTAATAATCCTTAATGTTTTTTTACTAATTATATACAATTAATGGCTTTATTATAGTATAATAGAGCCATTAAGCAAAGGAAAATATTTTTTTCTATGAACATTCTA # Right flank : TCTGCCGTCTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCACAAATATAAACTATTGATTTGTCAAGGTTCTAAGGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACGATAGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAGCTGCTCACCGTTGGGGTAATTTCTGCTAAGGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAGGCTTGGGTTTGAGGCACTAACTGTA # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 3 4459256-4460472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDMR010000001.1 Planktothrix agardhii 1031 1031_scaffold001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4459256 37 100.0 36 ..................................... CATAACTATTAACTATAGCAGTTTTTTCCTGTTCTT 4459329 37 100.0 36 ..................................... CAAGTAATGTATCTGACCCCGTAGCGGTGCGTTTAA 4459402 37 100.0 41 ..................................... TCTCTATAAGTAAGTTAGCTTTTCTAGTATTCTCAGGACTT 4459480 37 100.0 39 ..................................... AGTTTGGGCGGTGTTTGTGAGGGTCAATCTCTACCCAGT 4459556 37 100.0 35 ..................................... TGATTGACGAGAACCCCATTCAAAGAGACCCTCTC 4459628 37 100.0 36 ..................................... CTAATTGTCCAGTAACAAATTGGTTTAATAGGACTC 4459701 37 100.0 37 ..................................... TAGAGAATAGAAAAGGGATAAAGCAGTTTTTGAAGTT 4459775 37 100.0 36 ..................................... GAAATCAGAGTATGGCGACAGTTTCCGGGCTTTCTA 4459848 37 100.0 35 ..................................... CCAAGCACGTTAAGACCGCTTTGAAAAGTCTACAA 4459920 37 100.0 36 ..................................... CATATTTGTTCCTGAGTATAATTTCAATGCTCCTGA 4459993 37 100.0 40 ..................................... TTGTTAGGAAATTCTCTAAATACTTTTAGTTCGGCGATAT 4460070 37 100.0 37 ..................................... ATGGCGGCGATCGCATTTTTAAGTCGGTTAAGGTCAA 4460144 37 100.0 35 ..................................... AGTGAACCTAATGAATGCTTGGAAAATATAGTTAA 4460216 37 100.0 37 ..................................... TTCCCCAGATAATTCGGGCAATAGTTCGGGCAATAGT 4460290 37 100.0 37 ..................................... GTTGTTGAAAGATTTTATCGGAAGCATCAAGAACCAT 4460364 37 100.0 35 ..................................... TCCAAAATAGATTTATGCTCCGAGACAATTGGAAC 4460436 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 100.0 37 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : AGGGAACATGGGTAATATTTCTGACTGTTTCATGTCAGTATTAAAATGTTACAACCTATTATAGTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAGAAAAGACTAAATAAAACCCCGACTAGATTATGTTTAGTCGGGGTTTTATGATTTAGGGATTGTCAATCAAAAGCCCCCGATTCCCAATAATCCTTAGCCGCTTCCCACTGTTCAGACGTAGCCGCGCAGTGGACTTGATGCCCTGCGTCTGACAACTTTCCTTTGTGATGTTTGGCGATCGCACCCTCCAAAGATACACAGATTAATCGGTACAGAGGGATTGGGGATTGGTTTATTAGGATATCCAGGGATTGAATAACACCCAGACCAAAGCCCTGCGGATCATAAGTCACATGATTCTGTCTAGTTCCATCGGATTTGAAGTAACGGGCGTGAAGTAGTTGCTTTTCCATAATTTAATCAATGACTACAACTTGTGTTCGCCAGGCTTTTTAGTAAT # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCTCTGAACTCAAATAAAAAACCCCGCATCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAGAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA //