Array 1 177684-176515 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWD01000002.1 Pseudomonas aeruginosa strain MRSN1380 MRSN1380_contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 177683 28 100.0 33 ............................ TTCCCCTTGCAGCGGCGCATAAAGTCGGCCATC 177622 28 100.0 32 ............................ TCCTCCAGCACCTTGTCGGGGCGGACGAGTTC 177562 28 100.0 32 ............................ TCCCGGAGTCTCCACTTTCTGCTGCTTCCCCT 177502 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 177442 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCTGAAGCCTA 177382 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 177322 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 177262 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 177202 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 177142 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 177082 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 177022 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 176962 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 176902 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 176842 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 176782 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 176722 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 176662 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 176602 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 176542 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37374-38362 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWD01000029.1 Pseudomonas aeruginosa strain MRSN1380 MRSN1380_contig00029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37374 28 100.0 32 ............................ AGTATGCGGCCATCGGCCCCTTCCGGCGGCGC 37434 28 100.0 33 ............................ ACGTTGCCCCCATCCTGACCATCAACGGAGCAA 37495 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 37555 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 37615 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 37675 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 37735 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 37795 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 37855 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 37915 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 37975 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 38035 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 38095 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 38155 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 38215 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 38275 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 38335 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47694-46886 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWD01000029.1 Pseudomonas aeruginosa strain MRSN1380 MRSN1380_contig00029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47693 28 100.0 32 ............................ GATGGCCGCGCATAGGATCGGACTCCCGTCCC 47633 28 100.0 32 ............................ AGGTTGGTCAACCTGGTCGGCGAACAGCCACA 47573 28 100.0 32 ............................ ATCTGATCGAGCCTCAGCGCTCCGCTTCGTAA 47513 28 100.0 32 ............................ TGGAACGGCTGCAATCGAGCGCTCAGGGCGCA 47453 28 100.0 32 ............................ TGCGAGCAGCTTGCCGCTTGCGGCCAACGCCT 47393 28 100.0 32 ............................ GCGAGCAGTTGCTGGAAGAACAGACCGGCATG 47333 28 100.0 32 ............................ ACCACTTCGCCACGAACGGCCAGATAGCGGGC 47273 28 100.0 32 ............................ GCATCCTTGAAGCTGGTTTTCTTCTCGACCGC 47213 28 100.0 32 ............................ CAAATGGGCGTGGTCGCACCCGTTGCCCACCA 47153 28 100.0 32 ............................ TGGCCGCTCGGCGTCGTCTCGTTCGCCACCTG 47093 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 47033 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 46973 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 46913 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //