Array 1 531339-531887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076644.1 Listeria monocytogenes strain UKVDL4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 531339 29 100.0 35 ............................. TTATACTGTCGCGCGTTATAATTAAATTTAAAATC 531403 29 100.0 36 ............................. AAGATTGGATCTTTATCTGTTGAAAATATCGATCGC 531468 29 96.6 36 ..............A.............. ATACTTCAAATTCGTTTCTTAATATCGAAATTTGTT 531533 29 96.6 38 ..............A.............. GCGCTTGTAGTTGAAACCGATAGAAGACAAGCACTTAA 531600 29 100.0 35 ............................. TGTTGAGTGCTTCAACCAAGTACAACGCACGATAA 531664 29 100.0 36 ............................. TGAAACTATCCGTTTCTTTGGTCTTCACTTGCCCCG 531729 29 100.0 36 ............................. TGTCGATCTTGCGCAGTTAAGGTAAATGCTGGTTCT 531794 29 86.2 36 A......A......A..........G... TCGTAATCTCCTTGTTCTCTTGTATTGTCTATACCG 531859 29 79.3 0 T.....A........CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 95.4 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGGCGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAATAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGATCGACAGAAAGGGGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTTTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 548788-551204 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076644.1 Listeria monocytogenes strain UKVDL4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 548788 29 100.0 35 ............................. AATTTATTTGCAATATCAACCAGTTTCATTTCTCC 548852 29 100.0 35 ............................. GTGTTTGTCGTTGTCAAATCTCTTGTTTCCGCCCC 548916 29 100.0 36 ............................. CACAGTTGGTATGATGCTAATCTGTCTAAAGATTGC 548981 29 100.0 35 ............................. GGAACTAAATTCATTTGATCTTTGATTGCTTCTTT 549045 29 100.0 37 ............................. CTTGTTGATAATGTAAAAATGATACAAGTGTCATGTC 549111 29 100.0 35 ............................. AGGACTACCGATTATCGGTCGGTTGCTTTGCCTAC 549175 29 100.0 36 ............................. AAATTTTCCTCGTCGAATATATCCATCGCCCATATA 549240 29 100.0 37 ............................. CCTGAAACATAACAATACTGATCTAGAATTTTAGAGT 549306 29 100.0 34 ............................. ACTTTTTTCGAATTCTAAAGGTTTACCATGTAAA 549369 29 100.0 36 ............................. ACGTTTCGATTTTTCGTAAAAGTCTTCCTGTTTTTC 549434 29 100.0 35 ............................. TAACATGGAGCCACGGCAAACCTATCACTGCCGAA 549498 29 100.0 37 ............................. ATGAATGGAGAGAAAAAGTAAAAGTTATTTTGAGGAA 549564 29 100.0 35 ............................. TTATTAAACCGCGCGTTTTTTTCCATTCCGTTAAA 549628 29 100.0 34 ............................. AATGTAGCACGAATGATTTTTTTGTATTCTTCAT 549691 29 100.0 36 ............................. CCATTAATGCGTGCAGCATTGTTTAATCCGGAATTG 549756 29 100.0 36 ............................. TCATTTGCAGTCCTGATGAGGATAACGGTATATCAA 549821 29 100.0 36 ............................. GATATTATATTGTGCGAAAATATCGGCAGTTGATTC 549886 29 100.0 35 ............................. AGTAATGAGTAGCGATTAAATTCTAACGCCTATTC 549950 29 100.0 34 ............................. ATGGTTGTTGATGATCTTTGGGACGATGGTTTTA 550013 29 100.0 37 ............................. TCAATCTGCACTTTGCACTTTTGCGTGTCGTTATAAA 550079 29 100.0 35 ............................. TGCACAAAACCTTGATTATAAGTTGAAGATGTTCT 550143 29 100.0 36 ............................. TTTGACTTGAAGAAGTAAAGTACCTCCTGCTTTACT 550208 29 100.0 34 ............................. TACATCGAAATAAAGTTCTTTGCTGTCCGGCTCG 550271 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 550337 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 550402 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 550467 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 550531 29 100.0 36 ............................. CTGATGTAGCTTATTTTTAACTGTTCGGTGAAATAA 550596 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 550660 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 550723 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 550788 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 550854 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 550919 29 100.0 35 ............................. CAGTTTACTTCAATGGATGAAGCGCACGAATACAC 550983 29 100.0 34 ............................. TTGGATGAAGATGAAGTGATAAATGATGGAGAAG 551046 29 100.0 34 ............................. ATGTTAAAACTACTGGTAGACCATTGGAGAAACG 551109 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 551175 29 93.1 0 .......................A....C | C [551198] ========== ====== ====== ====== ============================= ===================================== ================== 38 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //