Array 1 96525-94787 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFKO01000068.1 Escherichia coli strain HH-P012 sequence068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96524 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 96463 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 96402 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 96341 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 96280 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 96219 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 96157 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 96096 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 96035 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 95974 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 95913 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 95852 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 95791 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 95730 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 95669 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 95608 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 95547 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 95486 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 95425 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 95364 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 95303 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 95242 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 95181 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 95120 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 95059 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 94998 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 94937 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94876 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94815 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123172-122228 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFKO01000068.1 Escherichia coli strain HH-P012 sequence068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123171 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 123110 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 123049 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 122988 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 122927 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 122866 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 122805 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 122744 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 122683 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 122622 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 122561 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 122500 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 122439 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 122378 29 96.6 32 ..............T.............. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 122317 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 122256 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //