Array 1 1091909-1082254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012173.1 Metallosphaera sedula strain ARS50-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1091908 24 100.0 39 ........................ CTCTTCAGGAGAGACCGCTTCGTCCAACAGCTTTCTATA 1091845 24 100.0 39 ........................ ATACTTTTCATGTATTGGTAAAGCGTAGTGTTCTGGATT 1091782 24 100.0 42 ........................ TTATCTGAAGTGAAAATATATACTTGAGTTTCTCCATCATAT 1091716 24 100.0 37 ........................ CACTTTTCGACTACATTAAGTAATTTCTTTTTCACTG 1091655 24 100.0 39 ........................ GTTGTCGCCCCCTATCTTCTGGCTAGGATTTTGCCAAAT 1091592 24 100.0 39 ........................ TGCTAAACCTCACAAAATACAGCTTGTATTCTCTTCTTT 1091529 24 100.0 40 ........................ GATAAAGTTAGGAAAATGTTTGATGAAATTTACAAATATT 1091465 24 100.0 40 ........................ CGTTTGTTAGAAACTATCAAGAATTTGGCTTATAAATTCT 1091401 24 100.0 42 ........................ TAATGAAAATATGGATAATATAAATTGTGGAAGATGGATAGT 1091335 24 100.0 40 ........................ GCTGACATTTTTTTCACTAAAATATAGTTCTCTCTTCTCA 1091271 24 100.0 39 ........................ TTACTGTATGTGAACACATAGACCTCTGTCAAACCGTCA 1091208 24 100.0 40 ........................ AATTTAATGTTGAATTTTCCGCCTAAACCGACTGGGGCTA 1091144 24 100.0 40 ........................ AAATAATGAAGATTATATTTTCCCCACTACGTTTTTGGGT 1091080 24 100.0 41 ........................ TCTTCTTCTTCTGTTGATCTAAATATTGCGCTAAAACAAAC 1091015 24 100.0 45 ........................ CTTCTAAAAAGTTTTCAAAACTATCCTCCTACTAACTAATTATTT 1090946 24 100.0 41 ........................ TGTTTAAGCAAAAAAAGAAGGCGCAAAGCGCCGAATAACTT 1090881 24 100.0 41 ........................ GAATGATTTGCCTTAGTTGGAATGGATCAATCACCACGTGT 1090816 24 100.0 44 ........................ GGCACTTTCATTCCGTATTGTTCTAGCAGAGGCGCGAACACTTC 1090748 24 100.0 42 ........................ AGGAATTTCCAATTAATCTATCATCTAGGAAAAAAAATCCTA 1090682 24 100.0 43 ........................ AACTGATGTCTATGCTGTTGGGTATCACAGTCCCAGTAAATCG 1090615 24 100.0 40 ........................ GATTTGGGATTAAAGACCTAAATAATGTCTCCGATCAACA 1090551 24 100.0 41 ........................ TGTATATTTCTCTATTTCTAACAAATACTTAGCTTCCGCCT 1090486 24 100.0 42 ........................ AAAGAGTACATTAAGCAAAAGTATAACGCTGAAATATTTTCA 1090420 24 100.0 41 ........................ GCGACAAGTTAAAAGATGTTTTCATCCAATAATTTATCGTG 1090355 24 100.0 38 ........................ CTTATTGCCCAGCATCTCTTCCAGATAATCCATTGCGT 1090293 24 100.0 38 ........................ TCCTGTTAGTGTGGCGAAATTGTTTATGATGTTAATAG 1090231 24 100.0 42 ........................ TTTATACATATGTCATGTCAAGTATATAAATCTTTCTCTCTC 1090165 24 100.0 41 ........................ CCCTAACATTAGCGCTTGAAGTAGTTTTTGAAGGCATTTGC 1090100 24 100.0 41 ........................ CCATCAGAACAACTATGGCAGGTGTCAACGTCAGTTATGAT 1090035 24 100.0 39 ........................ ATGTTATTGTCTGTACCTTTGAACCACCTTTCCCAATCT 1089972 24 100.0 45 ........................ GTTGGCCTTCCCATCAGCATCAGTAATTGGTAAACGTATTCCCAT 1089903 24 100.0 40 ........................ TTTGCTCCAACGCTTCATTCAATTCTTCTTTACTTCTCAT 1089839 24 100.0 40 ........................ TCCTGTAACCTCTGCTTGAGAACAAATGCAATCGCTTGAT 1089775 24 100.0 39 ........................ ATGACGAATGGAAGGTAATTCTTGACGCTTTAGGATTCA 1089712 24 100.0 39 ........................ TACTCATCTTTTAGCTTTGATCTAGCGTATGCTGGCAAT 1089649 24 100.0 36 ........................ TCACTGTCGGAGTTCCATCCGTGGCCGTCAATTGGT 1089589 24 100.0 41 ........................ AATGAGAATTTTTTACATTTTTGGATACCGATAGAGACAGT 1089524 24 100.0 39 ........................ TATGATGTCGTCAGCACGGAGGCTGGGCGCACCATACTA 1089461 24 100.0 40 ........................ CGCTGATTCAATAATGATAATGATAGTAGAAAACCTAACT 1089397 24 100.0 43 ........................ CTATTCCTATGAAATTAGTTAGCAATAGGGTAATTACGGACTG 1089330 24 100.0 41 ........................ TCAAGTAACACATTTAATGTGACGATTCATGTAACTAGCTT 1089265 24 100.0 40 ........................ CTACTGTTAGTGCTACCACTACCATGACTTGGTGGGGTGC 1089201 24 100.0 37 ........................ TACACAAAATAGTAAGTTTCCGTCGTCGGTTGTGGCT 1089140 24 100.0 40 ........................ AAAGAAGTTGAGAACAAAGAACCTTTAGTCATAAGTGAGA 1089076 24 100.0 41 ........................ CCTTCTTTTTTCCTTGTTTATTAAATAGGAACATCCCATAT 1089011 24 100.0 39 ........................ AACGATCTTGAACGTCTGAACGTCTACTGGGAGAGTGAA 1088948 24 100.0 39 ........................ ATACACAGGTGGTTAACATGGAAGTACTAAGGTTCCAGA 1088885 24 100.0 39 ........................ GGCAGAACAGAGGTATGCGTGGCAGAAACTAAGCGGGGG 1088822 24 100.0 41 ........................ ACTAGATACGCCATTGCTTCTCTCACGCATCTTTCTGCGTT 1088757 24 100.0 39 ........................ AAGTTCACTGGGGGCGTGGGGTTTAACGTTAATATCAAT 1088694 24 100.0 44 ........................ GGTGAAAAGGAAAGAGAACGGGCGGGCGAAACGGGGGCGATTTG 1088626 24 100.0 40 ........................ TTATATTTCTGCCATTTTCTGTAGATAATGCCCTGGGAAT 1088562 24 100.0 40 ........................ TTTAAGCGTTACGGCTTAGAACCATTCCCGGCGCCCGATG 1088498 24 100.0 42 ........................ GCTTCGTTTTGCCTTAGCAATAAGGCTGTAGCACTTTGTTCC 1088432 24 100.0 38 ........................ ATCCATTTCGTGAATAATGCCTTGTCTTCCACGTCAAG 1088370 24 100.0 40 ........................ GAACACACGCCTTTGCCCAGGCATGTGATAGCCTCGTACG 1088306 24 100.0 40 ........................ TTTTCTACTCAAAATTGTTGAGTAGAAAATCAAAAGACAA 1088242 24 100.0 41 ........................ ATTTCTCTGTTGGCTGTAGGTTTTGAATTTCCTTATCTGTA 1088177 24 100.0 40 ........................ TTAAAACCTCAATTTCTCTTGCGCCGCTTTCCAGAAGCAA 1088113 24 100.0 40 ........................ ACTTTACGTATTTTATCGTATGAGAAAGAGAAGAGAAAAA 1088049 24 100.0 40 ........................ TATGTATTAGCCATTTGATTTTGTAAAGCAGTTCCTGCTT 1087985 24 100.0 40 ........................ TAACGCCATCCTTGTATCATGACTATATCATTATGGAGCG 1087921 24 100.0 39 ........................ AGATGAGTGACCTAATACGTCTGATATTCGCCATGATAA 1087858 24 100.0 40 ........................ TAGGATTGCGTCCTACCTGAATGCCGTAACCTTTCAGGTG 1087794 24 100.0 39 ........................ CTCTCATGAATTTCCCCACATAGGGAGCACGTCTTAGAA 1087731 24 100.0 39 ........................ AAGCCAGAATATCTTAAGATAACACCTAAGATGTTAAAT 1087668 24 100.0 38 ........................ GAATACCTCTCCAATCAAAAGCCAACGTCCCACTGAGG 1087606 24 100.0 43 ........................ CTAGATGAGCAGTACAAGGAGGCAAGGCAAAAGATTGGTCCGT 1087539 24 100.0 42 ........................ AGTTCTACCGCTAGGTGCAAAGGGGTGTAACCATCAGGGAAG 1087473 24 100.0 37 ........................ CTACCCTCCCATCCACCTTTTTCATGAGGTTGAGAGG 1087412 24 100.0 41 ........................ TTCTAGTAATGTGGAGCGGACATGGATTTCATCTATTTTAC 1087347 24 100.0 40 ........................ AACCCCTGACCGAACTCCCTAGCCAATTTCATTAGATCGA 1087283 24 100.0 36 ........................ TCTCTTCCTTAACCATCTTCTCGATGGCTCTTCTGA 1087223 24 100.0 39 ........................ ACATGAGCGGGACGACCATCACCCCTGGGTCGTGTCCGT 1087160 24 100.0 36 ........................ TGAACTCATCAAACTCTTTCTCTTTGCCGTAAAGCT 1087100 24 100.0 39 ........................ AATGCAGGGACCGCTTTCCAGTACGATTCTGCAACAGTT 1087037 24 100.0 42 ........................ TGGTTAAATTCTGCATTCAATTTTTATCAAAATCTAGCATGT 1086971 24 100.0 40 ........................ TTGAGATTCATGATTGCAATGACGTCACGGTCGTTTTCAT 1086907 24 100.0 42 ........................ CAAGTTGAGCCAGGACCTCCTCAACTTCTTCCTCTAGGGTAT 1086841 24 100.0 41 ........................ TCTCAAGAAGAAGTTAGAGTCTCAGCCAGAGACTCAGACCG 1086776 24 100.0 40 ........................ TGAATCATGGAGAAGAAAATTTGAGAAAGGAAAAGCAAAA 1086712 24 100.0 41 ........................ GAACCTACTGGCAACTACATGAAGATTAAAGCCAGCAGACT 1086647 24 100.0 40 ........................ TACTGTGGGCCGGTGCGACCCACGGACTCAATACGGTTAG 1086583 24 100.0 42 ........................ AGATCGAGATGATTTTTTGAGAAAAATTCTAACTAAATATAA 1086517 24 100.0 38 ........................ TTTACATTCAAGACTTATTCATGGTAGATATAGCGAAG 1086455 24 100.0 40 ........................ AATATGACAGAATAATAAGTGTTGCAAAAGACTGTATGCA 1086391 24 100.0 41 ........................ TCCTTGACGGAAGGGGTATTTCACCCCCTTTGAACCCCCAT 1086326 24 100.0 40 ........................ TAATGTTCTTAGTTAATTGTTCTTTTCCAATTATCTTAAA 1086262 24 100.0 39 ........................ GGGTCAATGCAGTAATATTAGGAGGAATACCACAAGCTG 1086199 24 100.0 40 ........................ TTAAGGTGATTGCAGGGTTATATACTACCCTTATTCTCTT 1086135 24 100.0 41 ........................ ATGTAATTAATTTAAACTATGAAGGAGAGTTGGTTTATTCA 1086070 24 100.0 39 ........................ AGGTGGATATGAAGTTGTGTAAGTCATGAAAGCTAAAGT 1086007 24 100.0 42 ........................ AAGACTGGACCTCCTCTCCTCCCTAACCCTCTGGACTTGTCT 1085941 24 100.0 42 ........................ AACTAAAGAGAAATGACTACGTCAAGAAGGAGGTCCAGAGCG 1085875 24 100.0 42 ........................ TTTCTTATTATACCCTCATTACCAGTAAGAGCTACTCCTTGT 1085809 24 100.0 36 ........................ TCCCAAACTGATGAAGAATCCCTTGTCCTTTATTCC 1085749 24 100.0 40 ........................ ATTACTACTTTCTCTTACGTCGTTCCTTAAGAAATAGTAA 1085685 24 100.0 41 ........................ GAAAAGAAGCTTCCTACTCCTCCTATTGCATTTTTTACGCC 1085620 24 100.0 43 ........................ AGTAGGACAGCAGCTCCCTGCTAGAGTGGGAGAACTTCAGGTA 1085553 24 100.0 39 ........................ AGGCAAAGTACTTGGACTTCTTTGATGTAGACATGTCCA 1085490 24 100.0 40 ........................ TCAATATCTCTACCATCATATTAAGGACATAATTGACCAT 1085426 24 100.0 38 ........................ CACCGAACTTTTCAAGATTCGAACCCGTAGTCGTATTG 1085364 24 100.0 40 ........................ ACTCCATCAGGACCCTCAAGGATGAGACCAACACTCATTG 1085300 24 100.0 40 ........................ TTACCGGTTCACAGTATTCCTCTAGTTTCGTTCCGGTTAT 1085236 24 100.0 43 ........................ TCAGTTTGCAAGCAGACTAGGTTGTGATGTATTATGGTCCTTT 1085169 24 100.0 44 ........................ ACAGGGACTTCAGGCAGTACGCTCTACATCACGGAGAAGGACGT 1085101 24 100.0 38 ........................ ATTCACGAAACGTTTAATTGTATAACCGCAAAAAAAGA 1085039 24 100.0 39 ........................ TTTTTGGAAGCGTAAGTGATCAATGCATATCTTAACGAG 1084976 24 100.0 41 ........................ GTTCGAAAACCCTAGTCCAGCAGGGCAGGCTGGACAGTTGG 1084911 24 100.0 38 ........................ TCTGAGAATTAGACCTGCAACGAAAAGGCTGATCGTAA 1084849 24 100.0 40 ........................ GCTAAGATATCTTGAGTGACTACCTTGAGAGCGTCATATG 1084785 24 100.0 39 ........................ GTAATAATATATTTACATTCAGGGAACCTTTGGACCCCG 1084722 24 100.0 43 ........................ TTAATGAAGTTGTATCCTCAAACTCATAGGGGACCACTATGGG 1084655 24 100.0 42 ........................ GTCAAACTCTTTCTAACCCCCCGCTCACGGGGGAAAAATTCG 1084589 24 100.0 39 ........................ TCGTCCTCGACCAACCGCTCTATCCTCTCCGCGTCGAGA 1084526 24 100.0 45 ........................ TACAGTGATGAGTATCTTGATGAGTGTTTTGATGAGGGGGATGAT 1084457 24 100.0 41 ........................ GTACCTAATCTGAACTCTACACGGGCTTCCCCCACTAACTT 1084392 24 95.8 40 ................A....... TTCCCGCGTTGAAGAATATTCCTTCTCAACTTGTCATATA 1084328 24 100.0 39 ........................ TTCCTTCCCCAAGTTCGTTATCCCCACAAACAACACTTG 1084265 24 100.0 39 ........................ GGTACATGTCCTCGTCTTCGGGTTCAGATTCACACAACA 1084202 24 100.0 40 ........................ ATAGTTTCGAACATACTACTAGTGATCAGTGGTTTATGAC 1084138 24 100.0 40 ........................ AGATTAAGATAAATTAGAGCGACTTCGTAGTCTGCATGAA 1084074 24 100.0 41 ........................ TTTCACCATCTCGTTGTAACTCGTGAACCCAACGGTCCTAA 1084009 24 100.0 43 ........................ AAAGAAAAAAAGATCAATTACAAACTACATAAGACGAAAATAT 1083942 24 100.0 40 ........................ TAATCCCAGGGCCTTTCGGTCTTTGACTCCACATCTTCAT 1083878 24 100.0 40 ........................ TAACGATTGGAACTGAGCCGTCATCAGATACGAAGGCTTT 1083814 24 100.0 41 ........................ TAACTTTCACGATATACTCGCGTCATCCAATAACCGTATAA 1083749 24 100.0 41 ........................ TTCCCTTATTATTTTGTTCCACTCTTCTCCAGTAATTTGAT 1083684 24 95.8 39 .............G.......... TCATTTTTTGGTTTTGTATTTCTACTGTAACTTCAATTA 1083621 24 95.8 40 .............G.......... CTCGTGGTCTCAACTAAGGGTGGATCGGCTTCAGTGACCG 1083557 24 100.0 39 ........................ AGTACTTTACTTTGTGAATGGAGGAACATGGAAAGTAAG 1083494 24 100.0 39 ........................ ATTCCAAGAAGTTATCAAACAATTCCGTTTGTGAACTGT 1083431 24 100.0 40 ........................ CCTCGTCTGGAATCACTAAATCTTGCTCGTCAATTATTGA 1083367 24 100.0 42 ........................ TCAAACATGAGTCTTGTCAAAACTTTCACGGCACCGAGTGGA 1083301 24 100.0 39 ........................ CCTGCTCCTCCTGATCCATTCGCTGACGATGTACCTGGA 1083238 24 95.8 39 .............G.......... CTTGATACACCAATCACAGTGAGTAGTAATACACCGATG 1083175 24 91.7 40 .C...........G.......... GGAGCAAACGGGCAAAACGGAGCCGTGGTGGTAATCGCAT 1083111 24 95.8 39 .............G.......... TCTTTATTGCTATCTGGATTGATAGTTTTCCGTAGAACT 1083048 24 95.8 39 .............G.......... CTAATAACTGACTCTCTATCACCTTGACCATTTTTTGAA 1082985 24 95.8 42 .............G.......... AGACTGTTTTCCAATTCATTATGATAACCTTAATGAATCACG 1082919 24 95.8 40 .............G.......... AATTTTTTCTCTAACTTTCTAAGTAAAGCCTTATCATGTT 1082855 24 95.8 40 .............G.......... ATGAAAAGAATAGGTAGATCACTTTTTGGCATCATTTGAT 1082791 24 95.8 41 .............G.......... TCTAAAAATTCAATCTTCTTTTCAAGTATACTTTTTCTTCT 1082726 24 95.8 44 .............G.......... CTTCTGCTCGGTATCGTCTAAGGCAGGATTCGGTGAATCCTCAC 1082658 24 95.8 39 .............G.......... TTCGACTCGATTAGCTTCCTTACCTCTGCCAATTTCAGC 1082595 24 91.7 39 .............G.......G.. AGAAGGGTTCTGAGAAATCCCTGTAATCATTAGAAGTAA 1082532 24 95.8 40 .............G.......... AATTGCTCAAAGACTTTTTGGAGTTTTAGGTTTTGGGTCT 1082468 24 95.8 40 .............G.......... AATTGAACTAGGGCGAGAATGCCCAATATTATACCTATTA 1082404 24 91.7 41 C............G.......... TATGCGTTTTTATTACATTTTGATAGGCCGTGTCAAAATCA 1082339 24 95.8 38 .............G.......... TCACCTTCAACTGCCGAGACCATGCAGTGGTATAGAAT 1082277 24 91.7 0 .........T......A....... | ========== ====== ====== ====== ======================== ============================================= ================== 151 24 99.4 40 GTTAATCTCCTATAGAGTTGAAAG # Left flank : ATAACTCCAACCCCTGAGCTCCTCCTCAATCGGGTCCGAGGCCCTATACGAGTGGAGGAGCCTGAGTTGTCTCGTAATCTGCGACCTCATGGGTTTATGTTGGTTGGGAATCTAAAATTCATTCAAACGTGGGGGTTGAGAGACTTCCCGTGCAGTGGCGGGATTGGAGTGGGGGTGGACGGTGTGTGGGATGGGCTGATCCCTAGGAAGACCGGGACAGAGGGGAGTTGATCGTGAAGTTTAGGGCGTGAAATGATACAATTTTAGTTTGATGGGAGTAAAATATTGATTCCCTACTATAGTCCTTGAGTTAGGCTGTCCTACTATCGTGACCAGGTACGTCGTTAAAGGTATCTCATTACATTTATAGAGAATACGTTAGTGTCCCGGGAGTTGTAGGGATCTGACGAGATCTGATAAAAATTGTAAGACAATGAGACAGAAAAGATTATATAAAGGAAGAAGATAGATAATGAATAGAAGTAATATAAAAGGTATCA # Right flank : AATCACACGTTCTGATATCGGAAAGTTTACCTTTTTTACTCCCTCCCAATTATTCCCTGTGACATGCCTCATAACTCCCATCGGGTTCGACGAAAAGTTCATCGTGAGAAGTTTCCTTCGGCACGGCAAATCGAGGATCCAGGAGGTTCTCCTGGTTAAACCCTCCGCGAAAAACGAGAAGACGGAGATCGCAATCTCAAACCTGATGAAACTCCTGTCCGAGGCCTCGACCCCCCTCCAGACCCTTGAGATCAATCACGACGATTTCGTCTCCTCAGTCTCTAGAATAATGTCCTGGGTTAAGAGGTCGACTCACTCGGACTACCTCCTCAACCTATCCAGTGGAATGAGAATAGTCGACCTTGAGATCCTTACTGCCTTCCTTCTCCTCCAGATTGACGCTGAGGTTGAGGTTGAGACCGAGACCCTTCAGGGGCTCGTGACTTTCAGGGTGAAGGACCTCATCCCATATCAACTTGAGGAGAGCGACCTCAAGATCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTCCTATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 1097325-1100887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012173.1 Metallosphaera sedula strain ARS50-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1097325 24 100.0 41 ........................ AAGGCGAAATGCAGAAGATGTAGTAGCAAAGACAGCTGTGA 1097390 24 100.0 40 ........................ CAACTCTCATGATTATAATCCCTCCATTTTAAAATGTATT 1097454 24 100.0 40 ........................ AAGTTTACTTCAGTTAATGAGCAAGTCAGCGCAGTGCTAA 1097518 24 100.0 39 ........................ TTATATTTACGGGTAAGACGGCGTTAACGAAGCGTTAGG 1097581 24 100.0 42 ........................ AGTTTAAACGTTACAACTCTCGTTTCCAAACACCTCGTTTGT 1097647 24 100.0 40 ........................ AAAACGAGACCTTTGGCTAAATAAACCGCACCATAGATAT 1097711 24 100.0 42 ........................ CTATGAAATTGTCGCATTCGTATGCAAAATATTTCTGGATCT 1097777 24 100.0 39 ........................ TACATATCCTTCAATTGTGATCTAGCGTATGCTGGTAGT 1097840 24 100.0 40 ........................ ATTTGGATTTTGATAATTTTCTTTTCTTTGTCATAATAAT 1097904 24 100.0 42 ........................ TATAGTTAAGTCATTTTTTCTTCTTGTGGTGGTATTACCTAT 1097970 24 100.0 40 ........................ TACCAATTTCTGCTAATAACGTGAACGTACTCTCGCTGAG 1098034 24 100.0 37 ........................ TAACTTATCCCCTACATGATTGCGAAAAAACAACAAT 1098095 24 100.0 40 ........................ TGTTTTTAAGGACCTGGAGGCAGTCCGCCATTTACCCCAC 1098159 24 100.0 39 ........................ TGAGAACAGCTGTCTTCACTGCTGACCATCGAGCGACCT 1098222 24 100.0 40 ........................ TTTTCTTTCTCATACATTACTCTTATTAGTTTACTAACAA 1098286 24 100.0 41 ........................ CTTCTTGTTCTTCTCTCTGCTTTACGCCTTCTTGTTCTTCC 1098351 24 100.0 41 ........................ TCTGTACGTGGGTCAATAAATGTCACAATCGCGTACTTCTT 1098416 24 100.0 39 ........................ ATAATAATCAACGAGGCAAACTCCATGTTCTACAAACCA 1098479 24 100.0 37 ........................ ACTAGGCAAACGATACTGAGACACAGCGGGACTGCAG 1098540 24 100.0 42 ........................ TTGGAAACACTCCGTATCAATCCTTTAGACTGCAACTCCTCA 1098606 24 100.0 40 ........................ AACATTAGTGTAAAGCCTGCAGCGTTTGCTGGAAGCACGG 1098670 24 100.0 44 ........................ TCTCGTCCTTAAATTTCAAAACTTCCATGTAGCTCGCCCCCTCT 1098738 24 100.0 40 ........................ CTTATGTACACACCACCTGAGCTAAGGAGTGTCTTAATCT 1098802 24 100.0 41 ........................ AAATGGGACGATGAGGGTGTTCAACAGATACAACACCACAG 1098867 24 100.0 44 ........................ ATTATATATAATATATGAATAATAGCCCCCGTGCTTCGCGCCTT 1098935 24 100.0 44 ........................ TCTTTTGCACTATCCATTCCGACCACATCTCTCGGCTTCGATAC 1099003 24 100.0 40 ........................ TTGACGACGTGCTTACTCTTCTTTCCAGTTCTTGTTACTT 1099067 24 100.0 43 ........................ TTATCGATAAAATCGTAAACGATTTGTTGCCTTATTACGTGAA 1099134 24 100.0 42 ........................ ACACCTCTACTAACTTTACCAAAGCCTATCATAGTCCCAACG 1099200 24 100.0 38 ........................ CCTTTATTCTTGCTATTAGATCGAATAAATCGCTCGCG 1099262 24 100.0 42 ........................ TAAGTGGACACTATTGATCACCTCAGGGCTAGATATATGCCT 1099328 24 100.0 45 ........................ TCATTGAAATACTCAGCAACTGTATCCCTTAACTCTTCCTTATTA 1099397 24 100.0 44 ........................ AGTATACCTGGGAGTGCTGATGTAGATGCGTCACCGACCACGTT 1099465 24 100.0 40 ........................ ACTACGGGTCTCAAGGTAGTCGGTGTTCTTCTAGTAGCTG 1099529 24 100.0 41 ........................ ATCGTACTTTGCGCTGTACCTTATGAACAGTGGAATGTCCC 1099594 24 100.0 41 ........................ GTAAAGGGGTTGTGTTTTACGTTTTGAGTGGTGTTTACGAC 1099659 24 100.0 39 ........................ CTAAACATATATGAGTTCATTTTTTCCGACTTTCCTAGA 1099722 24 100.0 39 ........................ TAAAGTGATAGAATAAAAGCTATTATTCCAACTATTTCT 1099785 24 95.8 40 .............G.......... CCTTGGCAACTCGGACCCCCTCAAGCGTACGGAAGAGATT 1099849 24 95.8 40 .............G.......... AAACTCTCGATCAAGACATTTATTGTCTCTTCATCTATCT 1099913 24 95.8 41 .............G.......... TCTAAGGAGGATAAAGAGGAAGATTGGGCATTTTGTTCTGT 1099978 24 95.8 40 .............G.......... TTAGTGTTTACGTATGCTCTTTGTTGAGCTAGTTGTTGAT 1100042 24 79.2 32 .............G.....TTC.C GAGGATGATTATAAGCTCAGGGAGAAGATTGT 1100098 24 95.8 38 .............G.......... ACGTAACCTGTAGATGTGTAACCAGGCTCAGACGAGAA 1100160 24 95.8 41 .............G.......... GAACATCCGCCTTATCGTTATCTTTCTTCTTGAACAGGAAC 1100225 24 95.8 39 .............G.......... TCAATTTATCATACCTACCTAGTCTTACTAAAGTACAGT 1100288 24 95.8 37 .............G.......... GTTGGACTACCTGAAGTAATCGAGCTCAGTGGAGGCA 1100349 24 95.8 40 .............G.......... GTTTTCACGTGATACTTTATGATGTCGTTGCATCTATCGA 1100413 24 95.8 41 .............G.......... AGGACATAAGGCCTTGGCCATGGTCTCAATATCCCATTCTT 1100478 24 95.8 38 .............G.......... GCACTGACGTTTACTATCTGCAGCCCACTTGGTGACTG 1100540 24 91.7 40 .............G.........T ACACTGCCTTGATGAGCGGGATGCTTCCAATTCTCCCTCT 1100604 24 95.8 41 .............G.......... AGGATTCTTCTAAATGCTGTGACAAATGTTAGAATTAGATA 1100669 24 95.8 41 .............G.......... CAACGAAGAAAGAGTCGAGAAACTAAGCAGAGTCGAGCACT 1100734 24 95.8 40 .............G.......... TATTCGTCGTACGATTCCACTTCAACAGAGTTCACAATAA 1100798 24 95.8 42 .............G.......... AGTTGCTCTAGCAGGAGAAGATCCTGCTCTTCGATTTTGAAT 1100864 24 91.7 0 G............G.......... | ========== ====== ====== ====== ======================== ============================================= ================== 56 24 98.2 40 CTTAATCTCCTATAGAGTTGAAAG # Left flank : TTTCACAATGTTTGGACTGATGAAAGGGTGATATCACCTCCGCACGAAGGGCATGAGTGGTCCCTAGTCCTTAGTACCAGATTCCTCTAAAACTAGTTTAAGTCAGGACATAAACCTCCGTGACTCCTTATGGTAGACCCACATTCGTTAGCTTATCCTCACCCTTTGCATCTTGCGCCCATCTCGCGTCTGAAAATAAGTCTTATATGATCGACCTTAGTATCCTGTGAACCTGGCATGAGCAGATCCATGTATTAATTGTGTCATTAAAAATTTATCTGAAAGTCTCTTCCCGGGAGCCGTCATGAAATGACGCTGACGTTAAGATGATATTGGCAACGATGTGGATCATTGTTCATTATCTAGATCAAGAATACGTTAAGTTCCCAGTTGTTGAAGGGATTTCATGACTTGGGATAAAAATTGATGATCGTAAGAAGAGAAAAGTATATAAGTTGGGGAGAAAATGGTAGATGTGTTGAAGAACACAAAAAGTTTCA # Right flank : GATTACACTAAATACTACGTAATATGAATAGGTACTGTGAGACGAGAGTGGACTTTTACCTTTGCGGACGGTGTTAAATTTCAGAATCAGTATCCTCTACTACGAAACAAGCCCGAAAAATTACCCACCATCTTGAGGCCCCGTTCATTACATTGATTCTTGGATCTCGTGAGATAACAACTCGTTAAGTTTCCTAGGTCACGATTCACTCAAACAAGAAAACACGTTCATTATTTCCACTTCCGGTATCAAGAGGACATCTTGAAATTGAAGTGACCTAACTCTCCTAAACATGAGGAAAGACCAGGGAACGCAGAGGTTTCCACATCACGGGATCTGGTTATCCTCTCGATATCTTACCCGTCCTCACCCCCTCTCGCCTTAAATACCTCTGAAAGTACTTTACCCCATGGAAATCGTAAAGGCCAGCCTTACCTTGATTCCCACAAGGGACGTGATCCTACCGCCGGTGACCTCGAAAGTCCTGAAGTACCTTATCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAATCTCCTATAGAGTTGAAAG # Alternate repeat : CTTAATCTCCTATGGAGTTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 1104339-1114684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012173.1 Metallosphaera sedula strain ARS50-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 1104339 24 100.0 40 ........................ TCTCAATCTGTAGGCCAAGCCACTATTATCATAACTCCAC 1104403 24 100.0 41 ........................ TGAATGCAAGCCTGTCGTACATTACTATTCTACCTTGTTTG 1104468 24 100.0 42 ........................ TTTGTCTGTTTCGATTGGAATAATTTCAGCGTTACCATAAAC 1104534 24 100.0 39 ........................ TACCTGTATGACAATTCGCTAAAAATTTAAACTATCTAC 1104597 24 100.0 39 ........................ TCATTTCCATTTCTTTCAATTTATCAACTATTAACCTAA 1104660 24 100.0 42 ........................ GAGGAAAAGAAGGCTAACGCATTAAAGGCGTGGCATTTAGGG 1104726 24 100.0 39 ........................ GACCCATATTTAGGAGTTATGTCAGCTATATCCAAGCAT 1104789 24 100.0 41 ........................ TCTTGATTTCCATGTCTATCCCCTGCGCATATCTCATATCA 1104854 24 100.0 39 ........................ CATGAGCTGTCCCTCCGATAAGATCATATTTGATGCAGA 1104917 24 100.0 40 ........................ TGAAATAACCGCCGACATCCAACGCTGGAAATTTATATCT 1104981 24 100.0 40 ........................ AATCTTAAACCGCAACCTTTTATAAAATCTTCAACTGTAA 1105045 24 100.0 40 ........................ CCTATAACCTAATAGCATAATATTTACTATGTCCCTCCAT 1105109 24 100.0 39 ........................ TGCTCACCCTCTTCAGTTTCTGCGCCTTCTCCCTCACCG 1105172 24 100.0 40 ........................ TTGATATTTGAGTGCCTGCGCAAATTCCTCAAACAAATCT 1105236 24 100.0 40 ........................ TCTTTAGTCGCTATAATGTCGGGTAATGGTTGCTTACCAG 1105300 24 100.0 46 ........................ TCTGATTCTGATACCTCCTCTTCGCTCCCTTCTTGTTCACCTTCTT 1105370 24 100.0 39 ........................ CTTTTTTGCAACCTAGAAAGCCTTGTTGCGAAATATGGC 1105433 24 100.0 38 ........................ ATTGCTTCTACTTCTGCTGGCATTTTTTTCCACTAAAA 1105495 24 100.0 41 ........................ GCAATATTGGATAGGATTCATATCATCCAAGTTGCAATAAA 1105560 24 100.0 39 ........................ GCAATCATTGCGAAAATAACGGGGCATAAACGCCTGGAC 1105623 24 100.0 41 ........................ TAGGTAGAAGGCAGAAGGAAGTTTTAGCTTCGATATTGGAA 1105688 24 100.0 41 ........................ CGTTTCTCTAATCTCGCCAACCTAGTTGCGAAATATGGCTG 1105753 24 100.0 39 ........................ TATATTTCGTCGCTATATCGCCCAGAAGACGTCTGATAT 1105816 24 100.0 40 ........................ GTTCACGAGTAAAACTGTATAAGAGTGAGGTAACAAATCT 1105880 24 100.0 40 ........................ AAAGTGAAAGTGATGCTGGAGGTGAGGGACAGACTGGGAG 1105944 24 100.0 39 ........................ ATTTGGATCTTGAGAATTTTCTTTTCTTTGTCATAATAA 1106007 24 100.0 43 ........................ AAGGCGTATAACAAAACGGCGTATGTCATATGTTCTGCTTCTA 1106074 24 100.0 39 ........................ AGAGAGGGCTTCACTTACAAGTAAATCAGCACACCTTAT 1106137 24 100.0 40 ........................ GAGAAGTACCCGGGCGTATCCAGGCTAAGCCAGTTATCAA 1106201 24 100.0 40 ........................ TTTGCCATGGAAGAAGCGAAATGTCAGTGTTGGTAGCTCC 1106265 24 100.0 42 ........................ GAATAGTAAGTAAATCATCACCTGCAATTATCGTGTATTTTT 1106331 24 100.0 35 ........................ ATATAACGAAAGAGCGTTCACAAAAGCGTTAGTAG 1106390 24 100.0 37 ........................ ATTGCTATAAACCACATCATGGCTCCTAGCATCAACG 1106451 24 100.0 40 ........................ TACAATCTTATCAACTATGTCTTCCAAAAATGGTGGTAGA 1106515 24 100.0 41 ........................ CCAAAAATCGAATTCAAGGACCAAAACGTAAAACCACCTGG 1106580 24 100.0 38 ........................ TATGATGTTCTCATTGTATTTGTTGAGATCATGTTTAA 1106642 24 100.0 40 ........................ GACACGGCTTTGTAAACAGAGAACCCAGGCAGAACAGATA 1106706 24 100.0 40 ........................ ATACCGGTGTCCATACAGCCAATACCCCCAACACCGCCAC 1106770 24 100.0 42 ........................ TAATTATATAAGCCGAATTGATGTAAATAAGACAAGATGACT 1106836 24 100.0 39 ........................ CTTGTTTTTGTTCTTTTTCTTTGTAATCTTCTATTCTTA 1106899 24 100.0 39 ........................ TCATGAATCAGTTTGAAAGAAGAGAAGATTGGTTAAATG 1106962 24 100.0 39 ........................ GGTTTTGTCTCTTTTTCTGGCTTTCCCGCCAGAATCTTT 1107025 24 100.0 41 ........................ ATTTCGCAATTCATTTCGAATTGTTTCAATTCACTTCAAAT 1107090 24 100.0 41 ........................ CTTTCTTCTTCTATTCCTTATCTTTTCCTTCTTTTCACTAT 1107155 24 100.0 41 ........................ CTTATTTCAGAGGATCTAATAGACGAAGGCGGAATCTTTCT 1107220 24 100.0 41 ........................ CTGGCATTACCCAGGCTTGGCGACACACCAGAAGACAGACT 1107285 24 100.0 41 ........................ GTTTTTGTTGTTTCGAAGAGAATTGGCGGGGCGCTGTAATT 1107350 24 100.0 39 ........................ GTGGGAACAGCGGTGCTATTCATGACCCCTCGCCCAGGT 1107413 24 100.0 44 ........................ AGACTTTATTTCCAGATTTTTCTATATTTATCATTCCGTTTGAT 1107481 24 100.0 40 ........................ GAGCACTCTGGGGGATACCCCCCCGACCCCCTACTGCTAA 1107545 24 100.0 40 ........................ TGAGACCGGGACACCGCCGAAATTAAATCCGGCAACGCCA 1107609 24 100.0 40 ........................ TCTTCTTTGTCCATCTGTATATCCCAATCACGCCATCTGT 1107673 24 100.0 41 ........................ ACTACATATGACGCCGTGGATTGCAGATCTGCTATATTCTT 1107738 24 100.0 40 ........................ TCCTCTATCACGTCATCTATAGCCACACACTTTTGAGCGT 1107802 24 100.0 39 ........................ ATGGATAAAGACGAATTGAAAGAAATTATTAAGAATTTA 1107865 24 100.0 43 ........................ TACTTTTAATCCAGCTTGTCAATGGATGCAGAATTAGAGAGGC 1107932 24 100.0 39 ........................ CGTGGGGCTCGCTCTAACTTGTAACGACACATGTTCCTA 1107995 24 100.0 44 ........................ CCTGAGCTAAGGAGTGTCTTAATCTTATCGAAGTCGTCTGGCTT 1108063 24 100.0 43 ........................ CTTCGCCGTATAACGATCCTACAACAATAATCACTGATTTTGA 1108130 24 100.0 39 ........................ GTAATGAAAGTAATGTCTTTTCTCATACGAAAAGACCAA 1108193 24 100.0 41 ........................ AGATGATGCACTGGCAGAGGCGACAAGAGAAAAACCAGGCT 1108258 24 100.0 39 ........................ CAATGAATTCAGAAAACAGCTGTTCATCCTGGTTCTCAG 1108321 24 100.0 38 ........................ ACAAGGACGTTTTCGTGATCCAGGTGAGCGAATACACA 1108383 24 100.0 38 ........................ AGCAATAATTTAATTGCACTATTTTTAACTGTGCATGA 1108445 24 100.0 39 ........................ TTCACTGTCTACACATAAGTATAAGGGGCTTCGCCCCTT 1108508 24 100.0 41 ........................ CATAATTCGTTTCTGTATTTGGCGTCAAATTTATTTTTAAT 1108573 24 100.0 44 ........................ ATTTGAAATAAGACAAATCAGTGCAGAAGAGGCAAGGAAACTAG 1108641 24 100.0 42 ........................ AGATACCATTTTTTCTCTTGTTTAAACGTATCTACGAACCAG 1108707 24 100.0 41 ........................ ACCCCGCCAATCAGTGCGTTGATGTTCGCTGGCTTCATATC 1108772 24 100.0 42 ........................ TATATATTATATTATGAATTATACCACACACTTCTTTTTCGC 1108838 24 100.0 41 ........................ AGAAACGAATTGTTAGTTTACTTATCACGCCTTCATTCCCA 1108903 24 100.0 41 ........................ ATATCCACCCTTCTCACCAAAAGAATAATACAAAAATTTAA 1108968 24 100.0 43 ........................ TTGTCAACAGTTTCCGATAAGTCGTGAAGTTCATGTCATTTAA 1109035 24 100.0 51 ........................ ATTCTAGCTCGAATTCTGTATCTGAAATTTTACTTACTTTTTTGAACGACA 1109110 24 100.0 40 ........................ ATTATTACTACTATATCATCCGGATTCATTTTCTATCCCG 1109174 24 100.0 35 ........................ CTTATTTCTTCGCGGTTTATAATGGACCCGGAACG 1109233 24 100.0 41 ........................ TATCTTCCTGACGTAGATGATGCAGTCCAAACAATAGATAG 1109298 24 100.0 40 ........................ TGTACCAAGCCTGGATGGGTAGACCAGGACCGTGATCAAT 1109362 24 100.0 39 ........................ TCTTTCATTGGGTTCGTATAAAAATCCTTGACCTAAGGA 1109425 24 100.0 43 ........................ CAGACAATACGATCGAGTAGGGGACTGTGTGTAAAAATGAGGG 1109492 24 100.0 40 ........................ TGTACACTTCCTTCTTCTTAGGCAAGGTTATTTTAACCTT 1109556 24 100.0 39 ........................ GGCGGGTGAAAGAACTACTCGAGAAAGAGAAAAGAAAAA 1109619 24 100.0 41 ........................ AGTATCATTCAGTGGAAAGTTGTACGGTATGAGGAGTCATA 1109684 24 100.0 39 ........................ ATTCCACGATTTTAACCTTTACAGATTCCCCATATCCTG 1109747 24 100.0 40 ........................ CCTAGATCACGGGGCCAATCCAAACGTGAAAGATCTAGAT 1109811 24 100.0 41 ........................ TCAAAGGTTGCTGAGGACTGTTATAGGGATGCACTCTCAGT 1109876 24 100.0 39 ........................ TTGATCGTTAAAAAGTAACGTAAGACGTTTCACAAGAGA 1109939 24 100.0 40 ........................ ATATTGATTATGAAGACTTTAAGAAAGATACCAATTCTAT 1110003 24 100.0 41 ........................ TAATTCCTCTTTGATCTCTCTGGATTCTTGTTTTGTTGAAT 1110068 24 100.0 40 ........................ TTATTTCGAGTTTCTCATATATCTCCCACGTTATGTCAGA 1110132 24 100.0 39 ........................ CTCTCGTTAAGGAACTTACTCAAAGCCCTCAAAGACGAT 1110195 24 100.0 39 ........................ TTCAACTCCACGATTGATTTGATAATTATCAAGGCTTTT 1110258 24 100.0 43 ........................ AATGAGAGAGTCAGGCCGAGGCCCCTCATTACATCTATCATAT 1110325 24 100.0 39 ........................ ATAAACCAGCGTTTCCCTACAAGTATGAGGCAAAGAACA 1110388 24 100.0 43 ........................ AGGAATGAAGTGAGTTGTCCGGGTGGTACACCAGTCAAGTCAG 1110455 24 100.0 35 ........................ GCTTGTTGCTCAGCCATTGCGTAACCTCACCCCAC 1110514 24 100.0 38 ........................ TGGACACGTTGGGAAGGCCTTGCCACGCGGAACTCAGA 1110576 24 100.0 42 ........................ AGAGACTGGACCATAAAAGGAGTTCCTAAAGCGGGTAATAAA 1110642 24 100.0 38 ........................ TAAAGATTGACCTTATTACTCTTGACAAATATATCCCG 1110704 24 100.0 40 ........................ AACTTTGAAGTCAGAGTTTTCTGCTTCTTTTATTACTTTA 1110768 24 100.0 39 ........................ TACATTACCTTGATTATCCATTGTTGCGTTTAGCTGAAG 1110831 24 100.0 41 ........................ TATGATTTTCTCGCTATTCACCACCTCCTTGATATACTGTA 1110896 24 100.0 40 ........................ TCCATATAGAGATTTCTAATAATCAATTGGGGATAGATAT 1110960 24 100.0 37 ........................ ACGTTGAACCAACGTTACCCCCCGCCGTCAAAGACGC 1111021 24 100.0 38 ........................ TCCACGGAGGGGTGGAGAATGAAACTATTCGAAGGGAC 1111083 24 100.0 39 ........................ ATGAGATCTACCTCGAAAATACGAAGGCAGACGTTGAGG 1111146 24 100.0 39 ........................ GAAAATCTCAAAGACTTGTTAATCCCATCAAAAAAATGG 1111209 24 100.0 37 ........................ ATATCGTTATCCGCGGTCATTCTCACGTGAGTGATTG 1111270 24 100.0 40 ........................ ACGGTACGCCGTCGCCGACGCGGGGGATACCCTGTATCAG 1111334 24 100.0 38 ........................ AATAGTCTGCGTGGAAGTAAGTGACCTTCACGAACTTT 1111396 24 100.0 40 ........................ CGTGACCCCGCTCGTGCGGTCACGGCATGCTAGGAGGAGG 1111460 24 100.0 38 ........................ AAATTTTTAGAAGAAATATACGAATGTGTAGATAAAAA 1111522 24 100.0 41 ........................ TTTCTTTGTTCACGATCACTAACTCTAAGATATAATCGGGG 1111587 24 100.0 40 ........................ CAATAAAATCGTGATCAAAACGTTTTTGAATGAACTCATG 1111651 24 100.0 41 ........................ CTCATCAAGAGGCATTATTTTCTCATCAAAACCGCCAAGAT 1111716 24 100.0 43 ........................ AAAAATTATTCTTGTTGGATCTGTTGCTGCTATATTGGGTGTA 1111783 24 100.0 41 ........................ TTAGTAAGTCCCCTAGGGCATGATCCCAGAAATAACCACCA 1111848 24 100.0 43 ........................ GTAGATTATCAATCTTACCCAACGGTCCAAAGGAACTAAGTAT 1111915 24 100.0 40 ........................ TTTATCCTTAGGTATCTCATAGAGACTGGTTTAGCTTCGA 1111979 24 100.0 39 ........................ GCTATCAAAAGCTGGAGAGCAAGTAGCGACCTTTCTTTT 1112042 24 100.0 39 ........................ TAATCGGTTAAACCGCTTTTGAAAGGAAAATAGAATGAT 1112105 24 100.0 39 ........................ ATCCAAATCATTAGAATTAACGATAATTTCGGTAAGGAT 1112168 24 100.0 40 ........................ TACTGGAATCCGTATATAATTGATTCATTTAGTGGAACCA 1112232 24 100.0 41 ........................ AACTTCCTACTTAGACCGCGAATTAGCGATCTAGGAATCGA 1112297 24 95.8 38 .............G.......... AGTCTAACCCCCTTCTGTCCCTGATATTTTCCTCTATA 1112359 24 100.0 43 ........................ TTCTCAATTAGTCCACCCCAAGGTATCGTGAGAACCATAGTCG 1112426 24 100.0 37 ........................ AAAATTCGACGAGAAAATACAGAGAATCGCGAAGGCA 1112487 24 100.0 40 ........................ CTCCGCGAATTCTCTAAGTTTCGGAATAGCGTTGCCCTGA 1112551 24 95.8 43 ..........G............. ACAAGCCAAATGATGAAGTTACTACTACTAATACTACTACTAA 1112618 24 100.0 39 ........................ TTGCCATCGCCTCAACTACTGCCAGACCAAATGTCTCAC 1112681 24 100.0 41 ........................ TTCAGCTTAAGGATGACACTCTTGATATGTTGAGTCTTTCC 1112746 24 95.8 39 .......C................ GTAGGTGTGAAAATCACTATAGTCATCATACAGCCTCAT 1112809 24 100.0 39 ........................ TGCTTTGTACGTAAAATGACGTGCTTCTCCTTATACCAA 1112872 24 95.8 41 .............G.......... TGCACCAGTCCCTAGTGTAAACCCTTCCAATATTGACGTCT 1112937 24 95.8 42 .............G.......... CTTCATATCTTCAGCTTCAGGGTACCAGAGACGAATCTCACC 1113003 24 95.8 42 .............G.......... AGTAAAATAGGTCCTGCATTTGTACTAGGCGTTACGAATAAT 1113069 24 95.8 39 .............G.......... AGTATCGCAGCGGGCGGGGATGTCGCCGAAAAATCTACG 1113132 24 95.8 37 .............G.......... GTAATATCGGTCAATCCCACGAATGTGGACGTATACA 1113193 24 95.8 42 .............G.......... CGATGAACTGAAGGCAACGCCAAAACAACTGTTCAGGAAAAA 1113259 24 95.8 40 .............G.......... AGAGAGTCTAGGAGCAGGGATACAGAATGCTATAGGATCC 1113323 24 95.8 41 .............G.......... TATTGCGGACAAAGTTCAAAGTCATATATTTCTTTGCCCCC 1113388 24 100.0 40 ........................ ATTCACCCAGGGACGTTAATGCCGAATTCTATGAGGACAG 1113452 24 100.0 39 ........................ TTCTATAGTCAGGGGCATTTGGATTTACCTTAAGTTTGA 1113515 24 100.0 42 ........................ GAATATTGCAATTTCTGGATTATGAACACTGGAAAGTGATAG 1113581 24 100.0 38 ........................ TCGAAGTCCCTGTACCACCTCCACCCGTGCTAGTTCCT 1113643 24 100.0 37 ........................ CCCTGATCATCTTTAGCACTCATATGTTATCATGATA 1113704 24 100.0 39 ........................ ATCCAAGAACTCAATCAACTCCAGCGTATTTTCCCCAAA 1113767 24 100.0 40 ........................ ATCTTCCTCACCCTTATGTCCCAATGCCCCGAATTAGACC 1113831 24 100.0 39 ........................ GTAGCGTTTGAGGAACTAACCAATGCGACGATACAAGTA 1113894 24 100.0 40 ........................ GCACAATTGTTGTCGGTAAAGGAGAATGGAACAAACATAG 1113958 24 100.0 39 ........................ GCACCTCCGCCTCCCCCACCTCCACCTGCTCCGATTGCT 1114021 24 100.0 37 ........................ TAATTTTCTCGGTTACGGTACTGCCACTACTGGCAAT 1114082 24 100.0 40 ........................ TAAGGATGAACCTAATTGCTCAAGGAGAATAAGATCCTGC 1114146 24 100.0 40 ........................ GATAATGTAGCGTATATCCTCAAGCAGTTCTATAACAGAA 1114210 24 95.8 40 .............G.......... ATTATACTACTGTTATGTACTGTACTGTATATATTCCTTA 1114274 24 95.8 39 .............G.......... ATCTTTTCCACTGTATATTGACCATATCTTCTATCTAGA 1114337 24 95.8 42 .............G.......... TAAAGGAATGAGCTCTTGAATGACAAAACCCTTCGTTATACG 1114403 24 95.8 39 .............G.......... TCACTTTGCTCTTTATCGCATCTCCGACGTCGTTGAGAA 1114466 24 95.8 41 .............G.......... CCTTATGTAACTTGATCCATCTTCTGCACAACCTAGATCCT 1114531 24 95.8 43 .............G.......... CTCATGGTTCCCTGTCTCTCCTAGATGCATTAGACCAGACCCT 1114598 24 95.8 39 .............G.......... TATCATAAGAACATAGTAGAGAAGGCTCAGGATTACGCA 1114661 24 95.8 0 .............G.......... | ========== ====== ====== ====== ======================== =================================================== ================== 162 24 99.5 40 GTTAATCTTCTATAGAGTTGAAAG # Left flank : CGTCGTATTCCCCGTGAACTCCAACTAATGCATCGCCTCTACACAATTCTTCTACCCACTCCGGGGGAAACTTTGTCGTGAACTCCAACTAATGCATCGCTGCTACTTGACAATATGCTCGTGAGGTTCAAGATGATCATTAAGGCAGTGAACAGGAACCTCGAAATAAGAATTGCTCAGTAAAACTCGTTCTGTAGGACGCGGTTCACTCCTGGAATTTGTAACTTTATAACCACACTATTAAACGCAGCTAATTAATTGTGTAACTAAAAATTTATCTGAAAATCTTTTCCTGGGAGCCATCATGAAAATGCGTCGACGTTAAGATGATATTGGCAACGATGTGGATCATTGTTCATTATCTAAATCAAGAATACGTTAAGTTCCCAGTTGTTGAAGGGATTTCATGACTTGGGATAAAAATTGATGATCGTAAGAAGAGAAAAGTATATAAGTGTAAGAAATAAGATCATGTTAATCTAGCGGTATAAAGAGTGTCA # Right flank : GTCCTAGTATAGTACTTGAAACTAGGTGACCCTTAGATCGCTTAGTCTTATGTGGAGCTGATGCGTAATGATTGATTACGTAACGCTCTCCCTACGAATATTTCTAATTGACAAACTACACCATTTTTAAGTTCTTCACACTAATGGGACTGAAATCTCATAGACCCTATGCCTGACCTTCCCTAACATGACCTTGATCAATCTTGGAAGAGACTGAAAGAACCCCTTTAAGGGCCTAGGTTCACTCCTCTGTTCCTTTAGAATTGAGAAATACAGTACCACCTTTACCAAGTCTAGCAGATCTCGATTTCATGACTCTAAACTTGATTGGGAAAAAGTTAAGGATGGGGAAAATTTGCTGCTAGCACCTGATTTTCTCTCTATGGTCCAGTGTTGCCCTAGGTTAATGGGGGGTAAATGTGTCCTAGAGTTTTCCTCACGCAGTACGGTGTGAAATTCATGTACAGCAACCAGTCAATTACTGATCCTTAAGGGGATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTTCTATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 1136620-1136106 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012173.1 Metallosphaera sedula strain ARS50-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================== ================== 1136619 28 92.9 39 .............AT............. TGCCTCCAGAGGTGGGAAGCGTACGCAGAATAGCCCTTC 1136552 28 100.0 37 ............................ AATAGTTGCCCTTCAGGAGACGCCACTAGTTGAATGC 1136487 28 100.0 42 ............................ AAGTACCTCAGAGTTCCGTTCGGTGACATGGCTATGATGTGT 1136417 28 100.0 40 ............................ TTGGTTTTTATGGTCTCAGCTACTCTTAGTGTGTAGAGGT 1136349 28 100.0 39 ............................ ACGTGCAATCAAGTATTGGTTCAGTCGTAACAGGGGAGT 1136282 28 100.0 41 ............................ TCTTCAATTTCTCCGAAATCTTCATCACAATGGACCCCAGT 1136213 28 89.3 52 .......C......G............T GGGATCCCCGCTTCCCACACTCACGACCGGGGGGGGGGTGTAGACGTGTCGT 1136133 28 96.4 0 .......C.................... | ========== ====== ====== ====== ============================ ==================================================== ================== 8 28 97.3 42 TTGTAGAGATCCTTCGAGGGTTTGAAAC # Left flank : CCCTCGAGGAGTACGCTTCCGATCTGCTTCACCTCGAGGAGGAGCTCAAGGCAGATCAGTCAAAGGCCTGGGAGAGATATCTGGGAGGCCTGCTACTGTTCTCATGTCTCATAGACTCAGACAAGCATAGCGCCAGTGACACATCCTTTCTTCCCCAGAATCCCCCTTCACCCTCACTGATTACCGAGTTCATATCCTCGATCAAGAGTAACGATAGGATGGCTGGGATCAGGGAGAAGCTCAACTCCCTTGTCTCGTCTACTCCGGTTAGCCGGACGGTAACCTTGATTGCCCCGAGCGGATCGGGGAAGACGCTGTCCGGCGTTCTAACTGCACTCAAGATGGGGAAGTCGAGGTTGATCTATGCTCTTCCCTACATTAGTATTGTTGAGCAGGTTCACGACGTGCTCTCAAGGACGAGGATGGACCCGCTCAAGTTCTATCATCTATACTAGGGTAAGGTTTTTTAGGGCTGGCTATCAATAACAAATAAGAGCGGT # Right flank : ATGCTTTTAGTTAAACTAGAGAATGGGCTCAGGTGATGAATTACCTGGGCCGACCCATCAAGGGTAGCTTTAGAAGCTGAGCCTAGATCCCTATTTAACTCCTCTTCCTACCAAAATAAGCTTACTAGTTTTCCCTGTGCTCGGTTTTCCCAGTTATGTTCACTTCCTAGCGAACTAGTTTCTAGCATTCTTTAGAGATTAATAAAGCAAAGTTAAAACAATAATATCTCGAAGTCTATCAATAAGTCTGTAGTGATCCTCAAGGTTTAAAACCCTAGAGAGATTAATAGGATAACTAGTCATTGGAGAGCCTGGCATCAAGGCTTATTTTTTGGAAGTCTAAATAGGTGATGGGGCCCCCGGTCTAACTCTCTGCCAACAGCTGCCGGGCCCGGGAAAACTCTTGATTAGGCCCCCGCTTATACGGACCCTCCAGCGTTTTGAAACTATCACATTTTGTTATGCGTCCTTTGCTTCCTTGTCCGTAGATCCTCCCGAGG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTAGAGATCCTTCGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 1137838-1139325 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012173.1 Metallosphaera sedula strain ARS50-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================================= ================== 1137838 28 96.4 39 ......A..................... AAATAGTACTGACTTGATACGGCTAGGTGATAATAGCGT 1137905 28 96.4 39 ......A..................... GCAAAGGCCTTTCCCACACTCTCCAAGGGAGTATGAAGT 1137972 28 92.9 39 ..A...A..................... CTTACGTCTTGAAAGTACTCGATTATCAATTTAACAGGT 1138039 28 96.4 41 ......A..................... GCGTCAATTCTCTAAAAAGAAAAGGCTAGCGTGAAGGGGAC 1138108 28 100.0 41 ............................ TAAGTGAACCATGGGTATTCCCCCTCCGGGGGAACTTCGAC 1138177 28 100.0 39 ............................ TCGGAAAGAACATATACATCCTCCCCGTGGTTCCCGGGT 1138244 28 100.0 39 ............................ GTGTTTGTCCCCATCTTTTGATGGGGCAGCTGCTCCTCT 1138311 28 96.4 39 ......A..................... TATACTTTGGAAAATCAGTATATCTCTTGTATCTTCTGT 1138378 28 100.0 40 ............................ TCGATAGCGAACCTGATAACTTCGCTTCTATTCAGTCTGT 1138446 28 100.0 40 ............................ ATAGACGTATCGACCCGCCGTATAGCATCAAGAAGATAGT 1138514 28 100.0 43 ............................ TACACGACGCGATCACACTCACATGCCCGCGTGTCGCCGTTGT 1138585 28 100.0 39 ............................ ATAACTCTATACGCTCTCACACGGCTGAGGTCGAGGAGC 1138652 28 100.0 41 ............................ CCACCTTCACCCTCGCCTTACGGCCCTTTTCCTTCCTCAGT 1138721 28 92.9 218 ......A....................T ACAACCCCCTATGTCAAGCACCGTGTCCATTTCAACCTTTAACCTCTTATTTTCCTGGAATAAACGGAACTAGGTGACTGAGCAAGAGAAAGGAATGATAATGCTTATTTTGGTAGAGACGAATTTCGTGAGGGGGCCTTAGACTGAGTCTCCTCAATGATGGGTCGGGACAGGGTCAAGTCATCACCGGACCCCCGCTTTTCAATTTTGACTCTCGT 1138967 28 78.6 38 ....G.A......C.A.A...C...... TGGGGTTTGGTCGAATTAGTCCCATATGGTAGTTTCAG 1139033 28 78.6 237 .....AA...G.C.........CA.... TCGGATCTTCTCCCTACATGACGTATTCCTGTGACCTTTTCAATCCACCTCACCTCCAATTTGCTGGAATATAGGGAACTAGGGGGACTGAGCATGAGATAGGAATGGTGTCAAACTTATTACGTAAAGGAGGTGATAAAGGGTGGAGGGCCTAAGCTCATAACAAGTCCGATATGGCTCCATGTGTCAGCCGTTCATCATAGGCCCTCTCTCTAATTCTGTCTCTTTCATTATTGT 1139298 28 82.1 0 ..A.G.A....A.....C.......... | ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================================================= ================== 17 28 94.7 63 TTGTAGTGATCCTTTGAGGGTTTGAAAC # Left flank : AGTTCTAGGGAAGATAGTGCCCTCTTGGCGACGTAATATGCGATGAGGGAAGATATCTCAGCGTGACTGGATCGCGGATCCTTACCTCCACGAAGATGTTTCTGAAAGAAGGTCGTGTACTTACCAACGTCGTGGTATGCCCCAGCAATATAGGCTGGGTCGGAGAGCTCCGGACGACTCCCTGAGATGAGCGAAGATGCAGTGGTTCCTACCTCATTAAGGTGGTCCGCGAGGCGCTTGTTGGGATGAGAACATAGATCGTCCGGTGAACATTCCATGGGAAGAGTTAGGGTTAAGGTTAAAAAAGATTATTTTATAGCAGTAATAATTTTCCTATTGAAAAATCGGCAGTGAAAGGGAAGAAGAAAATATATAGAGATAACAATATTATTTTGTACGTGGGTTCACCTCGGCGGTGAAAGGGAAGTTGAGGGTGGTTGATCACTGCCGAATTTGGGGTAAGGTTTTTTAGGGCTGGTTACTAGTAGTAATAATAGCGT # Right flank : CTCGGATCTTGTCTCCATGTGGCATAGGCCAATTACCATTTTAATCTTCAACCCCTCATTTTACTAAGGAAATGGAACTAGAGGGTTGAGCTGAAGAAAGGAGTAGCGTCAAACTCATTGCGTTAAGGAAAGATGAGAAACAGCCCCAGTTCGTAACAAGTTAGTCATGGATCCGTGCCTCGGTGTCCATCACTCTCAGTCTGTCTCTAAAGATCTTGAGGCCTGAAACTAGGACGAATTCCCGAACATTATGTAGGCTATTTGTATTAACTCTCTTCACTCTTCATATGAAGTAACCTTTACCTGGCCTTCAGGTGGAGACTCAAGATTCCGACATATCCCCTCAACAATACCCCTAGTGTAGTCGGCATCTAAGCCTCTGACTTAACCCAGGTAAGAACGGCCACTCTCTCAACTTTGAGACAGTCACAAAAAGGTTTATTTTGTTGCGGGTACCAGCAATTTGCGGGTACCAGCAAATGTTCGTGTACGGAGTTCCC # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-2.38, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTAGTGATCCTTTGAGGGTTTGAAAC # Alternate repeat : TTGTAGAGATCCTTTGAGGGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //