Array 1 110304-108137 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEM01000002.1 Salmonella enterica subsp. enterica serovar Uganda strain 05-0212 NODE_2_length_337369_cov_3.20268, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110303 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 110242 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 110181 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 110120 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 110059 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 109998 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 109937 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 109876 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 109814 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 109753 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 109692 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 109631 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 109570 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 109509 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 109448 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 109387 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 109326 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 109265 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 109203 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 109142 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 109081 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 109020 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 108959 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 108898 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 108837 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 108776 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 108715 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 108654 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 108593 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 108532 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 108471 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 108410 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 108349 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 108288 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 108227 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 108166 29 93.1 0 .............C.A............. | A [108139] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120802-120530 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEM01000002.1 Salmonella enterica subsp. enterica serovar Uganda strain 05-0212 NODE_2_length_337369_cov_3.20268, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120801 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 120740 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 120679 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 120618 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 120557 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //