Array 1 53606-53060 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOIL01000036.1 Sphaerisporangium album strain CCTCC AA 208026 scaffold36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 53605 37 100.0 35 ..................................... AGCACACCGCGGACCGGATCGACCCCGACGACGTG 53533 37 100.0 38 ..................................... CTCCTCACTCAGGTTTGCGAAGTCGATTGTGCCTGTGT 53458 37 97.3 36 ...........T......................... ACCCCCGTCCGCGTCATGGACGGCGTCGGCCGGCAG 53385 37 100.0 38 ..................................... ACGAAAAGAAATTCGGCGTACGTGCGAAGGGTGCCCTT 53310 37 100.0 34 ..................................... CACCGGGACTACGACGGCAAGCTCATGGTCGAAC 53239 37 100.0 34 ..................................... CACCGGGACTACGACGGCAAGCTCATGGTCGAAC 53168 37 100.0 35 ..................................... GTTGGGAAGCGCGACAACGGCGAGTGCCGGTTCTT 53096 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.7 36 GTGGCGGTCGCCTCCGCGGGCGACCGAGGGTCGCAAC # Left flank : CACGGACAGGATCAGGAGATCAACCTGGCCATTGACCAGGACTTTTGATGGCCGCCGACCAGGAACCGCTGTCCGTCAGCCTCGACTTTTCTGTCCGCTGATCAAGAGTTCCACGTGACCGCTCTC # Right flank : GCCGCCTACCGCTCACCCGAAGGCACCCGCTCCAATTTGTGGACCACCGTGCAGACGGCGGTGGCGCCGCTGCTGGCCCCACCGCCCGCGCCACCTTCACCCCGGCGGCGGGGGAGGGGGTCGACCCGGAGGCCTTTCTCAAGGCCCGGGGCACGATCTACCTGCTGGTCTCGGAGAAACAGGCCACCGACCTGGCGCCGTTGATCTCGGCGTTCATCGACGAGCTCACCGAGACCGCCAAGAAGCTCGCCGACGCCTCACCCGGCGGCCGGCTCGACCCGCCGCTTGCCCTGCTGTGCGATGAGGTTGCCAACGTCGTCCCACTCCCGCACCTGCCCGCCCTGATGTCGTACGCGGGTGGATCGGGAATCTTCCTTGTCGCCGTGCTCCAGAACATGGCCAGGCCGAGAACCGGTGGGGCCGCGAAGGCGCGGCCATGCTCTGGGGCGCCTCCACGGTGAAGATCGCCCTGGGCGGTCTGTCCGGTGACGAACTGCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCTCCGCGGGCGACCGAGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCTCCCGGGGCGACCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.70,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 56065-55613 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOIL01000034.1 Sphaerisporangium album strain CCTCC AA 208026 scaffold34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56064 29 69.0 26 C..AC.......GG.......AG..C..A GCCACCCGGCGGGCGGTGTCGCGGCT 56009 29 82.8 32 .G..GG.T...C................. ACGCCCCGATGGTCGGAGCTGCTGGTCGACGA AC [55994] 55946 29 100.0 32 ............................. CGACTCGCGGAGGAATACCCCGAGCGATTCGA 55885 29 100.0 32 ............................. GTCGCGATGTTCACGAACTCGGTGACCACGCC 55824 29 96.6 32 ......................C...... CGACGTTCCGCGTGATCGGGATTTGCGCGTGA 55763 29 93.1 32 ................C......A..... GCCGCATAGGCACCTACCCGTTCATGATCCGG 55702 29 89.7 32 ....C.....T....A............. AACAGGGCGCTCGACGCCCTCGCTGCGGCCGC 55641 29 75.9 0 ...T........GT......AC.....AC | ========== ====== ====== ====== ============================= ================================ ================== 8 29 88.4 31 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : TGGCCAAGGCGTTGAAGGACGCCGTCGCGGCCACCAGCGCCTGAGGCCGCCATGGAACACGCAGACGCCACGGCCCTGCCGGACCTGCGCGCGGTGCCGCTCGGCCAACTCGCCACGCTAGCCCAGGCCGGCTGGCTGGACCGCGACGGCCGGACGCTGGCCCAGTCGGGCAGCGGCGTGAGGTTCAACTCCAGCATCTGACGCCACTGTCGCCCCGCCCTCCATCCAGGTGGCGGGGCGACGGCATGCCTGGGGCCACAGGGTGCGCTTGGCCGCCGCCACGGCGTCGCCCGTTCCCTTCCGTCTACCCTCGTGCCGCTCACCCCCACGGGTGTGGGGAGGACCTGGGACGGGCCAACGGCTGCATGCAGGCGATCGGCTCACCCCCACGGGCATGGGGAGGACGTGCCTTTGACTTCGACGGCGACGTCGCGTACGGCTCACCCCGACGGGCGTGGGGAGGACCGCGGCGGCACCGACCCGCGTGAGGTCGATGACGG # Right flank : TCGAGGTGCCGTCCTGGTCCACCGCAGCGCGTCGCCGGGGCGTCCAGAGATACACGTCGAGACGGGCGTGGTACGGCCTGTGACTCCAGGTGAGTGCGTCGTTCTCGACATAGGGCGAGCGGTGGCGGTTCAGGATTAGGGGTCATGAGCGCGGCGAGGATCAGACTGACGACTGCCACCCGGCTCGTGCTCGATGTGCTGCTGGCGTCCGACACGGATGACCCGGTGTGGGGGTATCGCATCTGCGCGCTGGCCGGGCTGGGCTCTGGGACGGTGTACCCGGTTCTGGAGCGGTTAGAGGAGGCAGGGTGGATCAGCGGGGGCTGGGAACAGGGCGATCCGAGCGGGCGGCCGCGCCGCCGCTTTTATGCCCTGACCGGCACAGGCCGGCGGCTGTACCAGGCCGCTGAGGACTCCCGGCGTGCCCGCGCGTGGCCTGCCACGGCGCTATTGCGAGAAGGACGCACGTGACCACTGATCTGTCCCCCCGGCAGAACACA # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 450518-451523 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOIL01000005.1 Sphaerisporangium album strain CCTCC AA 208026 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 450518 29 75.9 32 .A...AA.AT.C............G.... CGTGATGGATAGGGAGATGGATTGGGCAGAGG G [450532] 450580 29 96.6 32 ........................G.... GCCCGGCGGGCGGGCGTTTGCCGCCGCCGTCC 450641 29 93.1 32 ........................G...T CGTGGTGATCTTGGCCTAGTAGATGTAGGCCA 450702 29 93.1 32 ........................G...C TGGTATGCGAGCGATTCAGCAATGGTCGACTT 450763 29 96.6 32 ........................G.... TAGCGCTCCAGTCCGAGCATCTCGCACGCGTA 450824 29 96.6 32 ........................G.... TCGTCGCGCGCGTCGGCGAGCTTGTACCCCTT 450885 29 96.6 32 ........................G.... ACGACCAGCGCCGTATGGCTAGCGCACGCCTT 450946 29 96.6 32 ............................T GGAACCTGAGCAGGATAGCCCACAGGAGAATC 451007 29 100.0 32 ............................. ACAGTCGGGCGGCGTCGGTTCGGATGGCGGTC 451068 29 100.0 32 ............................. CTCGCATCGTGGGACACGTACCTAACCGGCGT 451129 29 96.6 32 ............................T TCGGCATCATGACGCGCTCGCCTGGCTCGGTG 451190 29 100.0 32 ............................. TCACCTTTGATCCGAGCTGTCTGCGGCCGTCC 451251 29 96.6 32 ............................C GCCGCCCGTAAGTTCGCATCGGGCGCGTGGGA 451312 29 100.0 32 ............................. ACGTGCCGGCCGTTCAGGATGATCTGCCGGAC 451373 29 96.6 32 ............................C TGCAAGCGGTGGACGACGGCATCATCGACCCG 451434 29 89.7 32 ............T.............T.T CTCTTGAGGATCACGGCGCGGACGGTAGGCGT 451495 29 72.4 0 .......TT...GT....AA.....C..T | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.9 32 GTCGGCCCCGCGCCCGCGGGGATGTTCCG # Left flank : GGCGATCATCTCGATCATGAGATCGATCGTCTCGGTGGCCCGCGGGGTGTGCTCGGGCGGGCGCATGTTCAGGGCGTTCGTGTCACGGCGGAACGCGTCCTCGTAGAACCGCGCGATCTCCAGCGCCGACCGCCCCTCACGGCGCGCCTGCTGGAGCACCTTGTCCTCGCCCGAGGCGTCGATCTCGTCGTCATCGACGAGGTGCCCGACGTCGGTGATGTTCTGACAGAGGACCGTCCCCACCCGGTGCCGCTCGAGCACCCGCCGGATCAGATCGGGCAACAGATACGACCGCAGGTTCCCCACGTGGGCGTACCGGTAGACCGTCGGCCCACAGGTGTACACGCGCACAACCCGCGCCCCCGGGGCGACGACGGTTTCGAGCTGCCTGGACCGGGTGTCATACAGCCGCAACATGCCACCGAGCCTAGGTCATGGACGTCGAGCGGCACAGATCTAGCGGGGCCGACCCCGTGATCGCGACCTACATCGTGACGGGC # Right flank : TGGTTCCCCTCTCATGCTGGGGCCGCCTTACGGGGCCTCGGGGTCGAGGAAGGCGAGGATGTCTCGGTCGCCGCGGTCGCGGAGGCGGGTGAGGACCTCGTCGCGGGAGGCGCCGTCGGGGAGGCCGATGCGGGCGCCGATCAGGCGGAGGGCCTCGGCCTCGGAGGCTACGGGGGCGGTGTAGCCGATGAGGTGCAGGGCCATGTTGATGGGGGGCAGGCCGGGGGCGGCCTGGGGGAGGTAGCGGGTCAGCAGCTCGCCGCCGTCGGAGACGGTGAGGAAGATCGAGTCGCCCTCACCCGCGTTGTAGTCGGCGAGGACGGTCCTGATGGAGCCCATCGTGGGCTGGTTGTGCCAGCTGATCACGACGTCCCCGGACGGGGTCGAGGTGGTGAGCGAGCCGCCGGGGGCCATGCCGAGGTGGGCGGCGAAGCCGGTCGGCAGCGGGGAGCCCGAGCCGCGCAGGTGCTCGGCGTTCACGTCCACGCGGTGCCACCAGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGTTCCG # Alternate repeat : GTCGGCCCCGCGCCCGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 467954-470815 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOIL01000005.1 Sphaerisporangium album strain CCTCC AA 208026 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 467954 37 97.3 36 .......G............................. TTGAACGGCCCCGCCAACTCGTTCTTCAACGGGCTG 468027 37 97.3 34 .......G............................. GACGGCAAGCTGGGCCAGGAGCTCCGGGACGGGT 468098 37 97.3 35 .......G............................. GCATCGGTGGCCGGAGGGATTCAAACCCTCACCGG 468170 37 97.3 34 .......G............................. ACGCCCGTGCGACCGGGTCAGCTCCGGGGGCTAG 468241 37 97.3 35 .......G............................. CGCGTGGTCAACCCGTCCTGGGCCGACTACCTGCG 468313 37 97.3 36 .......G............................. GCCGCGGCCGAGTCCGAGAAGCACCTGGCCGAGCTC 468386 37 97.3 37 .......G............................. ATTGAGTACTGGGAGCCTGACGAAGTCATCCAGATCG 468460 37 97.3 37 .......G............................. ACGTTGGGGTGGTGGCTCCGATCGCTGGGCAGCACCG 468534 37 97.3 36 .......G............................. ACCTACACCCCGGCCCCGGGCGCCAAGGGCACCCCG 468607 37 97.3 37 .......G............................. GTTCACACACGCGGATCTTCAACCATGCTCCGGCCGG 468681 37 97.3 35 .......G............................. ACGCCCCCACCTCCGGCAGGTCTCCGGGAGTGCCG 468753 37 97.3 37 .......G............................. TTGCCGTACACGGCGACGGTGGCCGGCTGGTACGGCA 468827 37 97.3 37 .......G............................. AAGCTCCTATACGGTGACCGGCCCCCGATCCACAGGC 468901 37 97.3 35 .......G............................. TGCCTAGGAAGTGGGGCACACGGAGAGATCCACAA 468973 37 100.0 36 ..................................... ACCAGCGCGGCGTGTTCGTCCGCCGGGCCGCGCTGT 469046 37 100.0 34 ..................................... TGGACGTCGAGCTGCGCGGCGGACGCCGGGCCAG 469117 37 100.0 34 ..................................... GCCTGCAAAGTGCTCGGGCTCACACGCATGATGG 469188 37 100.0 34 ..................................... TGGACGTCGAGCTGCGCGGCGGACGCCGGGCCAG 469259 37 100.0 34 ..................................... GCCTGCAAAGTGCTCGGGCTCACACGCATGATGG 469330 37 100.0 34 ..................................... GCCTGCAAAGTGCTCGGGCTCACACGCATGATGG 469401 37 100.0 37 ..................................... CACTTCCGGATGGGCCGGGCACGCGAGCGTCGTCGTC 469475 37 100.0 35 ..................................... ACCAAGCACGGCGCATTTCAGGTCAAGGAGTATCA 469547 37 100.0 35 ..................................... CGCCGGGGCAAGCCCACCATGGTCACCGAGACCTG 469619 37 100.0 34 ..................................... ATCTATGGCGGGGACGTCTGGCAGATCATCGCCA 469690 37 100.0 34 ..................................... GCCCCCGCAACGGTAGAGCCGACCTGCGCGACGT 469761 37 100.0 38 ..................................... ATGCGCCGAAGCGGCTGGAGAACGATCCTTCGGTTCAG 469836 37 100.0 38 ..................................... AGTGAGGTCAACGCCGCCGGACGCGAGGTCTACGACGT 469911 37 100.0 36 ..................................... GGTCAGGGCATGGTCGTAACCGTGCTGTGGGCTGTC 469984 37 100.0 36 ..................................... ATGGTGTGCCTTTCCGGTCGCAGGGCGGCCCGTCTG 470057 37 97.3 36 .........................A........... AACCAAAGGGAGAAAGACATGTTTCGCAAGATTGCT 470130 37 100.0 35 ..................................... GATTCCGCCCAGGATCGGGCCGGCGTCGGGCACGC 470202 37 100.0 36 ..................................... ATGGTGTGCCTTTCCGGTCGCAGGGCGGCCCGTCTG 470275 37 97.3 36 .........................A........... AACCAAAGGGAGAAAGACATGTTTCGCAAGATTGCT 470348 37 100.0 35 ..................................... GATTCCGCCCAGGATCGGGCCGGCGTCGGGCACGC 470420 37 100.0 34 ..................................... CACCTGTTCGCCCGCGATGGCTACCACGCCGTCG 470491 37 100.0 36 ..................................... ACGACTGGGACACCAAGGCACGCGGCATCGTCGGGC 470564 37 97.3 35 .....................A............... CACGCCCGCCGCGCCGCCCGCGTCCACGGCATCGA 470636 37 97.3 35 .........C........................... CACGGTGCCGGACGCGGTCACGGCCCACACCGGGC 470708 37 97.3 34 ........T............................ GCGTGCGTCACCAACATCATCGAAGGGAACACGG 470779 37 94.6 0 ..........................C..G....... | ========== ====== ====== ====== ===================================== ====================================== ================== 40 37 98.6 35 GTGGCGGCCGCCCCTCCGGGCGGCTGAGGATCGCAAC # Left flank : ACCGTCGCCCTGGTGGTCTAGCGCCGAGCCCGTCAGTGCTGCTCGTGCTCTTCGGGGCGGCGGCGCTCGGCCCGCACATGGTTCGGCGTCGCCCTCCCGGCCGGGGCCTACGGCCTGGCCGCCACCCTCACGGCAACCGCACTGCTGCTCGTCAAGCTGACCGTCCCGTTCGACCGCCTGGCGGCGGCCCAGAAGTGGTGGAAGGCGCGCCTCGCCCAGCTCGTCCCTGTCGGCACGGCGACCATGGTTGTGCGCGACCCGCGCACGGGTACTGCGGCAGTCACTGTCAGATGTAGAGGCAAAATCGTTTGATCGTTCTTGCGCTTGTACGCTCATCTGGCGATGTTTGGTCGTTACCTATATTGCCGCTTCGGAACCTGGAGTGCTCATGCGACACGCCAGGCGTTCCGAAGGAGGTATCGCCCTGTATGTTCCTTGATAAGTAAATTGAGCAACGGTATTCGCCGGCTCTGCTCAGGAGTATGGGCTGTTCAGATGCC # Right flank : CGCCTTTCCCCACCCACTACACGGTCAACGCCCGGCTGGCAGTGGCGATCGCCCCCTCGGGTGATCGAGGGGTGGACACCTCGAGCAGGCGGACTCGTTCACAACGAGGGCCTCGGTGCGGTCGCTCCTCCAGGGGATCAGCACTCGCAGGGGTGCATTTGGCGGACCGACCTGCCGTAACGCGGAGTGATCGAATCTGTTCGGTAACTTTGTGTGTTGATCTCACGGAAATTGTCGGTGCGGTCTCCTACAGTCACCTCTTGCTGGATCGCCACAAGGGAGTGGGATGGCCGAGCATCTGTTGGCGCATAGTGCGCGTGATGGTGATGGGCTGCGCCATGGGCTTGCCGATCACCTGCGGGGTACGGCGTGGCGGGCGGGGGCGTTCGGGGAGATCTTCGGTGCTGGGCCGTTGGCGGCGCACTGTGGCTTGGTGCACGACGTGGGCAAGGGCTCGTGTGAGTGGCAGCGCGGTCTCATTCGGGCGGAGAGCAGTGGTG # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGCCGCCCCTCCGGGCGGCTGAGGATCGCAAC # Alternate repeat : GTGGCGGGCGCCCCTCCGGGCGGCTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-16.70,-16.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 478721-478901 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOIL01000005.1 Sphaerisporangium album strain CCTCC AA 208026 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 478721 37 100.0 34 ..................................... CCACCCCTGGAGCGCCGCCCGCTCGGCGGGGGCG 478792 37 100.0 36 ..................................... CTCACGGGCCCGCTCGTAGTCGCACGGCCCGCCCAT 478865 37 86.5 0 ...............................GTTG.A | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 95.5 36 GTGGCGGTCGCCTCCGCGGGCGACCGAGGGTCGCAAC # Left flank : ACCCGTCGTCCAAGCGCGCCTCCTCGCTCGGCACATTCGAGGTGAGCTGCCCTCCTACGTGCCCTGGACGCTTAGCTAATGCAACTCCTGCTGACCTATGACGTGGCCACCACCACACCCGAAGGACGCCGCCGCCTCCGCCAGATGGCCAAGCTCTGCGAAGGTTACGGACACCGAGTTCAAAAATCCGTATTCGAAATCACCTGTACCGACGCCGAACTCCTCACACTCCTCGACGGCGCCCAAAGAATCATCGAGCCCCGCGATGACTCGGTGCGTATATACCGCCTGCCCCGCGACGGATTCACCACTGTGCACCGACTGGGGATAGCCGAGCCCATACCCCACCACGAACCCCTCATCCTCTAGTTCGGAACCTGAAGCACTCACGCGACACGCCAGGCCTACCCAATGAGGTATGGCCCGATATGTTCCTTGATAAGCGAATTGAACAACCATAGTCTTCGGCGCTGTCCAGGCATATTTCCTGCTCAGATGCC # Right flank : CGACTTTGAAGATGCCGATGTAGTGGGCGGAATGCGGCATCCTGTCTGCCGACAAGATCGGATGCATGTTCCGGGTGACCGGGGAGTTCGTCGGCGGCGGCACCTCGCCGACGAAGGGCA # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCTCCGCGGGCGACCGAGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCTCCCGGGGCGACCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.00,-13.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //