Array 1 4032507-4033917 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031968.1 Chromobacterium rhizoryzae strain JP2-74 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4032507 28 100.0 33 ............................ CCGCCGCCCCTTCACAAAGCGCACCAGCTTGCG 4032568 28 100.0 32 ............................ TGGACAAGCTGAAATTGCTTGGCTTTATTCCG 4032628 28 100.0 32 ............................ AGCTCGGATAGACAATTACATTGCCACTAGAC 4032688 28 100.0 32 ............................ CGCCCCCAGCTTGCCGCACACGACAGAAAAGG 4032748 28 100.0 32 ............................ AGCACCGCGATACCGGCAGTAATGGCGGCAGT 4032808 28 100.0 32 ............................ TCCCCCGCTCTCAGGAAAGCCCATTGCTTTGA 4032868 28 100.0 32 ............................ TTCGGTTTCCCGCTTCACGACCTGGGGTCAGG 4032928 28 100.0 33 ............................ CGGGCGGCTATGCCGATGCGCGGGCGCATATGC 4032989 28 100.0 32 ............................ AGCACGTCATTAAACCAAGCAGCAACAATGCC 4033049 28 100.0 32 ............................ TGGTCACCGGGTGAACGGCGACGTGCGTTGCA 4033109 28 100.0 32 ............................ AAGGGCACCACGATATAGGGCCGGTATTGCGG 4033169 28 100.0 32 ............................ AAAGAAGAAGCCCGCGCATGGCGGGCTTGTTT 4033229 28 100.0 32 ............................ GCAGCGTGGACGAGCTCAGCCGGCTGCGGGAA 4033289 28 100.0 32 ............................ TTGCGCAAGCCGCGAAGAACATCAATCGTCGG 4033349 28 100.0 32 ............................ ATGACACTGCCAAGCGGCTGCGGGAACGGAGT 4033409 28 100.0 32 ............................ AAGACCAGCTACGCCGGCCAGTTGCATCTGGA 4033469 28 100.0 32 ............................ AACGCGTCGGTGATCAGCTTGTGCAGCGCACC 4033529 28 100.0 32 ............................ AGCAGCAGGCGCCAGTTCTTGCGAATCCACAG 4033589 28 100.0 33 ............................ ATTCCAGATCAACGGGAAAACCTACGCCAGCAA 4033650 28 100.0 32 ............................ CGGCAGCACCATGTTGGCGTCAACGCCTTCCA 4033710 28 96.4 32 ....................T....... AAGCACTGCATCTGGTCCGATACGGCTAATGC 4033770 28 100.0 32 ............................ TTTGCGATCGCGTAGCGCGTGCCGCGCTCGCG 4033830 28 100.0 32 ............................ GTCAGATGTGCGCCCAACATACCGCCGGCCAC 4033890 28 75.0 0 ..........A.C...T.C..AA.C... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCTCCAGCTCGTTGGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAACCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAAGTGCCGGTGCCCAGCAGAATGCAGCTGGTATTGGCGATGGGGATATTCCAATACAACGAGGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACCCGGCAGTGCTGCAGGTAGTAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGGCGATACCTTTGGGATGGAACGCGACAGCGCATCTTGCCATGAGCATGAAGGGCATGACAGCCAGCGAGATCAACCATTTTTTCCAGACCTCTCTTCTGACCCTGTAAAAACAATCACTTAGCCTGTGGCTGAAAATTTGGGTCAAAGCCGGAAAAATCGCTGCAATGCCTACGCCATAAGGCAAGGGGGCGGTGTAGACTCTA # Right flank : AACGCCCCTGATGGGGCGTTTTTCTTGATCTGCTTCCAGAGCAAATCCTCTCCCCGAGGATAAAATATGCCAATCACATTGACAAAGGAGCCTCCGTGGAATACATCGACTACGTCAACCAGGCATCCAAGCTGATCTCGCCCCTCACCGCCATCTTCCTGGGCGCGCTGCCGGTATTGGCCATTCTGTTCGTGGTGCTGCGCACTCAGTCCTACCACATCCCCTTGACGCTGCTATGGCGCATTGTGGGCGGCAAGAAGGAGATCAACGACAAACTGCTGGCGGACTTTCTGGATGAAAGAAACGCCATCATGAAGTTCCGCACCCTGACCGGGCTTAAGATCCGCACCAAGCAAGAAATGCTGGCGCTGATCCAATGGGCGGCCAAGCACAACGAGGATATCGACGACGTCAAACGCTGCGGGCATTACTTCAAGCTCAGCGAGCCCGGCAATATCACCTCGCCCAATAGATTTGGCAGCATCGCCCTACTGCTAGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4043627-4044424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031968.1 Chromobacterium rhizoryzae strain JP2-74 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4043627 28 100.0 32 ............................ TCGACGGCGTGAGCCCGTGAACCCCGGCACCG 4043687 28 100.0 33 ............................ CGTCGGCGTATGACGTCAGACAAGGCCTGTTTG 4043748 28 100.0 32 ............................ ATGCTAGAGGATTGCGCGATTACGGTCTGGAT 4043808 28 100.0 32 ............................ CAGGGCAAGGCCGCGTAATGACTGCCTTCGTC 4043868 28 100.0 32 ............................ GCCGGGCGAGACCCGGGAAGTGGATGCCGCCT 4043928 28 100.0 32 ............................ GATCAGCACCGCGCCGAAGGATGGAACAGTAA 4043988 28 100.0 33 ............................ CTGAAGCCAAGCAACTGATCGACGTACGCCTGA 4044049 28 100.0 32 ............................ ATTGATATCGAAGCGCGGCGCCGCGACGGCCC 4044109 28 96.4 32 ..............A............. GTACAGATAGCAGCCGTCAAAGTTCTTGTACC 4044169 28 96.4 20 ..............A............. TGCCGCTGCGGCTGCTTCAG Deletion [4044217] 4044217 28 96.4 32 ..............A............. AGCGCGGTGGGCGTCCGCTGTATCCAGTTCGC 4044277 28 96.4 32 ..............A............. AGCGGCCGCTGATCATCGACGAGGCCGACTAT 4044337 28 96.4 32 ..............A............. AGGCGGGCGGCTGATTGATCGGAGCGCCGGGA 4044397 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.7 31 GTTCTCTGCCGGATGGGCAGCTTAGAAA # Left flank : ACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAGGCCTGGCAGGTACGGCGCAAGCAGGCCAAGACCAACCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAGGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGGCTGACCCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGCTATCAGCTGCACATCGAACAGCGCCCGGCCCCGGCCACCCGCAGCGGTCGCTTCAACACCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTGACCCTTTTTTCCAAGCCCCGCCGCCAAGCCTATTAAATCAAGGGCTTGGCGCGGGGTGCGAGAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCCGCTGGCGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : ATCTCAAGAGGTGAGTGGGGCCTGCCGGCTCTAGTTCACTGCCGGACAGGTAGTTCTCCACAACAAAATCAATGCTATATTAGGCATCTAAATTGACATTGACTAGGGAGAAATTATGGACTTGGTACTTGCCGATGTGGCCGTCAGCGTCACCGAGCTCAAGCGCAATTTTGCCGGCATCATGCGCGAGGCCGCAGGGCATCCGGTGGTGATCCTGAATCACAACCGCCCAGAGGCCTATCTTGTCCCTGCCGCCCAGTACGAACGCATGATGAGCCTGCTTGAAGACATTGAGGACACAAAGCTGGTGTTGGAACGTCGGCAGCAGCCCACTGTCAAGGTGGACCTGGATGAGCTATGAAATTGTCTTCCGGGTGGATGCGGAGAAGGAATGGCGAAAGTTGGACCCATCAATCCGACAGCAGTTTGCCAAGAAACTGAGAGAACGAGCCGAGCATCCGCACAACCCTGCCGCCAAGCTGCATGGCCTGGAAGGCTGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATGGGCAGCTTAGAAA # Alternate repeat : GTTCTCTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //