Array 1 110440-109188 **** Predicted by CRISPRDetect 2.4 *** >NC_002689.2 Thermoplasma volcanium GSS1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 110439 28 100.0 45 ............................ TATCTTACAAATCCAACTGGTGTGAAACACATTTTCTCTCACCTT 110366 28 100.0 42 ............................ CGTAAGGCTGATTGAGATGCATGACAACGACACGCTGACACC 110296 28 100.0 39 ............................ TCGAAAATGCCCCTTATGTATTCCTCCGGAACGTCTTCT 110229 28 100.0 40 ............................ AACATTCACAAACGTTAGCTGATCGCTATCATGAAATATC 110161 28 100.0 46 ............................ TGCTCTATCTTCCAGCACCTAAAAACCTTTTGCTTTAAAGCCTTGA 110087 28 100.0 40 ............................ AGGTTATCGATCCAATATTCGAGGTCTCTCTTCCCTATCA 110019 28 100.0 37 ............................ CCTTGAATTTCCATATTTTGCTCGTATTCAGCGCTAG 109954 28 100.0 37 ............................ TAAAAGACGATCTTCGTGATCTTGCCTCATCCTTGGA 109889 28 100.0 38 ............................ TAAAACCCGTGATGCATCGTAGCTATCATAAACTTCTT 109823 28 100.0 37 ............................ TTTTCGTCTCCATTTTTTCCTCCAGGATATAATCCCA 109758 28 100.0 42 ............................ AAGCATAATATTCGTTGTTGTCGTCGGGATAGAGGACGTAGA 109688 28 100.0 44 ............................ AAGTCGATAGAAGTGAACCTTGTCTTGATCAAAGTCTTTTATTC 109616 28 100.0 35 ............................ TAGACATATCTCTCACCGTCCACTTGAACGATGAG 109553 28 100.0 38 ............................ CCAGAACGTAGTTGTCGAAAATCCGTCCACGGCGGTCG 109487 28 100.0 39 ............................ TCGACTTGGCACGGAATATATCGACATCAGTGATGTAGC 109420 28 100.0 42 ............................ TATTGACGAAGTCCCGCTTTATAAAAGATCTGAATTAAAGGA 109350 28 100.0 38 ............................ TGGATAAAGCTATCCCCCTAGTGTCCACATTTGTAAGA 109284 28 100.0 41 ............................ CCTTCATTTCGATCCAGCTAACATCGTCTCTTTTCTGAATA 109215 28 96.4 0 ...........................A | ========== ====== ====== ====== ============================ ============================================== ================== 19 28 99.8 40 GTTTAAGATGTACTAGTTAGTATGGAAG # Left flank : GATTATAAATCCTTCAGGAGTAGATCTTGATGTATTTAATAGTTGTTTATGATGTTGATGAGTCCAGGGTAAACAAAGTAAATAAATATTTAAAGAGGTACTTATTATGGAGGCAGAATTCTGTCTTTGAGGGCGAAATTTCAGAAAATTTGATCGATTCCATGATCAAAGGCATCACAAAAATTATAAAAGATGAGGATTCGATAATTATATACAAATTTAAGGTTAAAAGCTATATCGATAATATAATCATAGGCAATGATAAAGGGAATACTTCAAATATGATATAATTTATTAATAAAAAGTATCCATTGGTACCACAAAAAATTTAAATATAAATTGATCTTTAAATACTAAGGGCAAAAAATCGATCCCCGCAAGATTTAATGTGGAATTAGTGTTTTAGGGGTTTATTATCAAAATTTTCCTCTCTTTGGATGTTTTTACATTTTTTAAGGAGAACCTTTAAATAACTATGTTTATTATAATTATTGATACGG # Right flank : TATAGGAAATATTTACGTGACATATCTGTATTTCTCTACATCGGATCAATTTGTATATTATTATAATTATAAAATGGTGCATATGTCCTTACGTATGAAAGGCCACTAGCAACGCCAACTATGGCATATGAAGAAAGAGGAGATTTAAATATTAAAAAAATAAATATAAAGGAACTAATTTCGGTATATCACAAGTAATTTTGCAGCCTAACAACCTAATATTGGGAAAAGCGTTTCTTTTTACCTACTACATTCCTTTGTCTCATCTTTATTATTTAACATTGAAGGAAACGTATTTAACGTATTTCGGATAAACCACTATGGACGTAGGCATGCCATTTGCAGGCCCGGTTTCTTTTCCGCTACTTGTGATAGAAGAGGAGCTGCCCTTCAGGATACACAACATTTGTTCCGAAACGGGGAAATTCGATGTCGTGTTGGATTCCATAACAAATATGCCAAAGTATGGTTTAAAAATATTTGCAGGCGTAAGGATAGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGATGTACTAGTTAGTATGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 122617-121470 **** Predicted by CRISPRDetect 2.4 *** >NC_002689.2 Thermoplasma volcanium GSS1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 122616 28 100.0 42 ............................ ATGCCCCACAGCCGATATAAATCCGCTTTCTAACAGTCTCTT 122546 28 100.0 42 ............................ TTCTTTTTTATCCATTTTTTCACCTTAATATGATATACCTAA 122476 28 100.0 44 ............................ GTAGTCCTCGAATACTTCTGAAATCAATTTCGTAGCATACTCGT 122404 28 100.0 38 ............................ TGTATTTTCTGTATGTTCTCTTTTCCCATGTAATATCC 122338 28 100.0 42 ............................ TACATTCGGCAGTGCTGCCGAATTGAGAACATACACCTTGTT 122268 28 100.0 45 ............................ AATAAGAATTTGCATGCCAATCACAATGGAGATACATAGAACCTG 122195 28 100.0 42 ............................ ATGTGATTTATCAGCTTTAATAGGCAGAGCTCTTGCTCCCTT 122125 28 100.0 44 ............................ AAGAGTCTTTCAATTGGTCTGCAATCAATGAACAGTATTTTCTA 122053 28 100.0 44 ............................ AGCTGAGGGCCTCCCTAACACCTTTTTCTACTCTATTGGACATC 121981 28 100.0 42 ............................ TCATCCGCTGCATATTCTGCTCTCCTTTTTTGTGCGTACCTG 121911 28 100.0 42 ............................ GCCCTGCCATGCGCTCCTGAAGAGCGAGTAATAAAAAACCTT 121841 28 100.0 40 ............................ GGTCTAATTACACCTTGCCTTTTTTTGGATATGCCTCTGC 121773 28 100.0 42 ............................ AGCGTTTAAAAGTATACTATCCGCATCTCCATTGCGTGAGTC 121703 28 100.0 40 ............................ ATATAAATTTGAGTGAAAATAGCCGAATAGGATTTTTTTC 121635 28 100.0 43 ............................ CTTATTGTACTCACAGTCTTTGCTGCTTTCGGCAGATTGTCCA 121564 28 96.4 39 ................C........... CAATAGCTCCGACAATTACGCCTTTATTATACAAATAAC 121497 28 82.1 0 ....G...C......A..G..G...... | ========== ====== ====== ====== ============================ ============================================= ================== 17 28 98.7 42 GTTTAAGATGTACTAGTTAGTATGGAAG # Left flank : GGGATGGGATCACATGTATTAAAAATAAATTCCAGGAATATTTAGAAAACAGTGGAATAAAGCATATATTAGGAGGAATAGATCATCCTGAAACATACGGCAAATTAGAAAGATTAAAATATACGATGAAGAGGTAAAGGCGATATTTCTTCACATGGGATATACATTATAATTATAAAAGAAGGCCTATGCCCTTACGTATGAAAGGCCTGCAAACACTAACTATGGAATATGAAGAAAGAGGAGGCAAATTGTATGTTAAAGGGCAATAAATATGCAAGGGAACTAATTTCTGGATATAATGTAGTAACGATTACTACGCAAAATCTAAATATAAATTGATCTTTAAATACTAAGGGCAAAAAATCGATCCCCGCAAGATTTAATGTGGGATTAGTATTTTAGAGGTTTATTATCAAAATTTTCCTCTCTTTGGATCTTTTTACAATTTTTTAAGGAGAACCTTTAAATAACTATGTTTATTATAATTATTGATACGG # Right flank : AAAATTGTCATGACAACCATGAATCACGGACTGTATAGAATAAAAATTTTAGAAAAACTGCAAGGTCATTATCGGGGAAATGGGATCAAAAATCCCCATGATCGGTATCATGAATTAAGGCCGATTGCAACATGTTGCAACCGATCATGTTGCAATAAAATAAAATATGGATATGAAAATTAAAATATGGAATTAGGATAATACGGGATAAAATGAATATGCAACACTATGTTGCAACCGTTGCAACACCAGTTGCAACATCGGAAAATGCCTAAAATAGAGGGTCTTCTAACGAACGCTGGCTTTTTCATGGTGACATGTTGCAACATGATGCAACACCAATTGCAACATAAGAAATTGCGTATAATAGAGGGTTTCTTGACAAGTGGACATCTGCATGGTGATCACGTTGCAACTGTTGCAACCGATCATGTTGCAACCGAATAAAATTAGGAGATGAAAATTAAAATATGGAATTGGAATAATACGGGATAAAATGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGATGTACTAGTTAGTATGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //