Array 1 13221-8269 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIMI01000036.1 Sulfolobus sp. B1 NODE_36_length_14383_cov_69.835985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 13220 25 100.0 40 ......................... TAGCCCACGCGAAAAATATCATATCGATAAAATCTCCCAA 13155 25 100.0 42 ......................... AAATAATAGTTTTCAAAATTCTGTGGCGTCCACAAGTCCACA 13088 25 100.0 39 ......................... ATTTCTTTCATGTATGAAATACACTGTGGGTCATTGATT 13024 25 100.0 40 ......................... AAATTTACATTATTTTGTAATCTATTACAGACACAAAAAT 12959 25 100.0 42 ......................... ACCCATTAAGCCAATACGGATATAATAGTAACATAGGGTTGT 12892 25 100.0 42 ......................... GAAGTTTTTATTTGATTATATATATCTTTCCAGCTCGTCATG 12825 25 100.0 40 ......................... AAATTTCCCGATAAACTCATCATACCTAAATAGTAAAAAC 12760 25 100.0 39 ......................... CTCACTATATAAAAATAATTTTAGCAAAAGATTTTCTGA 12696 25 100.0 36 ......................... TTTAGAAATTGCATTCCTATCACCATTGTTGTAATG 12635 25 100.0 37 ......................... TATTTTTTGGTATTGGCAGTTATCGTTAGAAAGTAAG 12573 25 100.0 42 ......................... GGTTCAACAGTCTACCCAGTTTGAATCTTTAGCCTACACAAC 12506 25 100.0 40 ......................... TTGATGAAATTGTATATTAGTAAATACAAACTCTGTCCCA 12441 25 100.0 39 ......................... TACGCTTTTTCGATCTCGTTCTTTATTTCGTCCAAACTT 12377 25 100.0 40 ......................... TTTGGATATGATTTCGCCGAAACCCATAACTTGTTTAACT 12312 25 100.0 39 ......................... CTCACCTTGTAATACATACACTTCTTGAAGTCAGTAAAA 12248 25 100.0 41 ......................... TTATCGATTTGTTAATCGGCTTAATGGTCGCAGGTCTCGTA 12182 25 100.0 41 ......................... TGTTTGTTGAAAATCTTTACAGCAATTTCAAAGTAAGACTC 12116 25 100.0 39 ......................... CTTTTCACTAAAATTTTTTAGTTTATAAATGTCTTTACG 12052 25 100.0 39 ......................... TCTTTCACGATAAAAGTCTACAATAGAATTGCTGGAAAT 11988 25 100.0 39 ......................... AACCCACCTATTACTATAGGGGTTTTATCTGGTTTACTC 11924 25 100.0 41 ......................... AAATAATAACAGTATTATTCCCATAACCATGCCTGCTCCGA 11858 25 100.0 40 ......................... AAATCAGCTACAATCCAGAAATGTATTCCAATTTTTTACG 11793 25 100.0 39 ......................... TCGGGTACCCAGATCTCACGGTTTTTTATCTTGAGGCAT 11729 25 100.0 40 ......................... ATAAAGATATTTAGAAAAAGGGAAATAGAAGAAATAGAAA 11664 25 100.0 40 ......................... CTATTAAATTTGTAAACCTTTACTGGATTACTGTGCGAAG 11599 25 100.0 40 ......................... CAGTTCATAGTTTCTAAGATTTTCTTTTTGTAATCTCTTA 11534 25 100.0 38 ......................... GCTGGTATTAGCCTTAAGTCACTATTAATTACATTCAA 11471 25 100.0 40 ......................... ATATGTAGCCTTTCCAATAGCTCGTCTATGTCGCCCTCAG 11406 25 100.0 41 ......................... ATATCAAAAACCCTTAAGTCTGTTTCACTATCCTTTATAAC 11340 25 96.0 39 .................G....... ACCGTTTCCAGTATTTCTGAGATAATATCGCCCTTCATT 11276 25 100.0 40 ......................... TAAATTCACCGAGTTATTGCATCTTTCGCGTCTGGGCTTT 11211 25 100.0 40 ......................... TCTTCAGCCTTTGCAATAATAAGCATATTTTGGTCTTCGT 11146 25 100.0 39 ......................... TTACCGTTCCTCAAGTGCCACAAGTAGTACACTGCATCA 11082 25 100.0 39 ......................... GTCCTACTTTGGTTATATTGTTTTTATGCATATACCTAT 11018 25 100.0 37 ......................... ATAAGAAATACAAAGACTACACGCCGGACTTCTACGA 10956 25 100.0 39 ......................... ATTGGAAATTTTTCTCTTATCGGTTTTGGTATCGTCATT 10892 25 100.0 40 ......................... TAATCTCCTGCTATCGCCCTATTCATTGTAACGGTATCGC 10827 25 100.0 39 ......................... GGTAAATAGTCGTAGCGAGTCGTTTTCTCGTAAGTAAAT 10763 25 100.0 40 ......................... AATTACTTCAGCTATATCTTCAGCTACGTTAAAAATACTA 10698 25 100.0 41 ......................... TCAATTTTCCAAACTTTGAATTTTGCAAACCGCAAAGTCTT 10632 25 100.0 40 ......................... TAAGTGTTCAATAAGGGAGTACTGAAATTAGAACTGGAGT 10567 25 100.0 40 ......................... ATTTTGTCACTTTGCACATTTAGATTAAAGTTGTCGAACA 10502 25 100.0 42 ......................... TAACGGTTAGCGAGATACAGTAGATTATTAATCTCATTCTCG 10435 25 100.0 44 ......................... ACGTAACTTTTCCCCGTTTTTCTCATGAAGTTTACGAGAAACTC 10366 25 96.0 40 ..T...................... GTTTTAAAATTTTGTTTTGAAAAATTATGTCCCCATATCT 10301 25 96.0 41 ..T...................... GTTAAGAAATTTACTAAATAATCGCCCACACATGTTTTCGT 10235 25 96.0 39 ..T...................... GTATTTTATTCGCTACATGTACTTAAAAATTGTATTTTT 10171 25 96.0 41 ..T...................... AACTTATAGACCTTCACTAGATTACTATGTAATTCACGCCC 10105 25 96.0 39 ..T...................... TTATCTCCCTCTTTTTCACCCTCAAATTTATCGAACTTT 10041 25 96.0 38 ..T...................... ATGATTTGTTGAACTATGTCCATAATTTTGTCGTTTAA 9978 25 96.0 43 ..T...................... ATTTCCAAAAGTTCTGATTTCTCAACATGATAATTTGAGATAA 9910 25 96.0 41 ..T...................... ATTTTGATTAATGTTAATTCCGCCAGGTGATGGATTATAAA 9844 25 92.0 39 ..T.....................A ATTAATATAAGTATACATATAGTCACCCTGAGCAGAATT 9780 25 96.0 36 ..T...................... TGAAGATTGAGAAGACCCTGAGGAGCCAGAACTTTG 9719 25 96.0 40 ..T...................... CGCTAAACGGCAAAACACAAACAGTATTTACAATAACCAA 9654 25 92.0 39 ..T......G............... GATATTCTTCATGAAACCCTTCTAACTCTGCAACACCTA 9590 25 92.0 37 ..T...C.................. TATTCGCCGGTTTTGTGATAATAATGTATTGCGAATC 9528 25 96.0 41 ..T...................... TTATTCCTTCGTTTTCATATCTAACCACAAAGTAATATTGA 9462 25 96.0 39 ..T...................... ATAATAGCCCTTGACGCGTTACCGTAATGTCTCCACCAA 9398 25 96.0 40 ..T...................... CTCATTTTACTGGGGAGTAAATTGAATTAAAAGGCAAGAA 9333 25 96.0 38 ..T...................... TCTCTCTCAAATTGAATGATATGTGTAGCCCCTCTTAG 9270 25 96.0 40 ..T...................... GTATCATATGTTATCCATAACGTTATTAGTGGTATATAAA 9205 25 96.0 41 ..T...................... GATACCATTCTTTTATTTCAATGTCCCTCCCTATTTCCTTC 9139 25 96.0 41 ..T...................... GTATAATTTATTGGTTTTATGTAGGCTGTAGACGCTATACT 9073 25 96.0 38 ..T...................... GTGAAACAACCGTCTGGAATTTCTAATGAGACGATTTA 9010 25 96.0 43 ..T...................... ATACAGCACAGCACAGAAAACTACAAACCCCTGGTCCACCTTT 8942 25 96.0 39 ..T...................... TCAAGACCGCAATAAACTCAGATTTGGAATCAATTGATT 8878 25 96.0 38 ..T...................... TGAAGATGTTGAAGAGCTAATAGATTTTGTCAAAAAAT 8815 25 96.0 37 ..T...................... GAATTAATATACATATGCAATATTTTATACTTCATAA 8753 25 96.0 40 ..T...................... AATCCATTAGCCCGTAGTACGGGTGAATATTGGTCATTAT 8688 25 96.0 44 ..C...................... TAAAGTGAAATATTAGAAACACTAATTGGAATTAATAGATTTTT 8619 25 96.0 37 ..C...................... GTTTTGTTGTAAAAGCTTATCTTTATTGAAAATTATG 8557 25 96.0 41 ..C...................... ACTGTATATAGTACGTTACCCGTAGCTTGTGTTTGAGATAC 8491 25 96.0 40 ..C...................... ATGTTTTGTAGTTTAAGAAATGGAACCTAGGTACTCTCGG 8426 25 96.0 40 ..C...................... GTTTCGTATGAATATACTTTGTTATCGATAGGATTTATTA 8361 25 96.0 43 ..T...................... CTATTCTTGATGACGTCCATAATGAAATTAGTATCGACTTCAT 8293 25 72.0 0 ..TT.......A....A.C.A...T | ========== ====== ====== ====== ========================= ============================================ ================== 77 25 97.8 40 GAAGCATCCCATAAGGGATTGAAAG # Left flank : TTAACTACTGCAAACCAGTCAAACATGGTAATTTTTATTTGAGGGAAATATAGATTTTATAATGTAATAAAACCTTTTTATTTTAACGTCAATCCAATTTTTACGTTATAACGCGCTTATTTAAGCCCCTTTATAAACATAACTATAACGTTATGTTAAAAATCGTTTTATATATTCTATCATTTTCAATAAATCTTTAAACGCCTTATTACGATATAATAACCTTATAACGCGTAAATTCAAACAGTATTTGTCAGTCTTCATTAAGTGGTTTAAAAGTGTAAAAGTATGAGTCTCAATGCGAGAGTTGCGATAATCATTTGGTGAATTAAACGTTTATAAATTAACCCAAACTTTCAAATAAATTAAAAGTCCATGCGAGAGAAAAACGTTAAAGACTATTACTAGGAAAAACACTCGCATGATAGGGGAAGGTGACTAAAGTAAAATTTATTATAGGGGAAGGAGAAGATAAGGAATATGGGTTAATAAACAAATCA # Right flank : ACATTTAAAGCTAGTAAAAACCCAGTGAAGTTTTTATGGTATATTATAAATAGAAAATCTATTAACTTCTTCAGAAGCTAGTCTCTTCAAAAGTTTCCTCATATATGTCTTTATATATTATTTTTATACTTTCTAAATTCCTCTACGTTTTTTATAGCAATATTTTTCATCCAATAAAGTTTTGTGCAAAATTGTTTCCCTCTGTATTTTATCCGTGCATTGCCCTTCTCTTAACTATTGGTATTTCGTTTTCTTTTACTAATATAACGCCCCATTTTCCTAGTATTTCTATCTCTTCTAATACAATAATCTGAAACTCCCTCTCCTTAAACTTTTCTGCTCGCTTACTGTCTTTAATTGCCAATACTATGATGAAATAGATGTTTAGGAAATAACGCATTTTAAAGGTACAAAATATAAAAAATTTTATTTCACTTTACATTATCTTATTCATTACATCATCTAGGTCCTTTGTTAAACTCCCTTTTACATACTCCTCT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCATCCCATAAGGGATTGAAAG # Alternate repeat : GATGCATCCCATAAGGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 3149-12006 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIMI01000003.1 Sulfolobus sp. B1 NODE_3_length_33890_cov_285.636767, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 3149 24 100.0 36 ........................ TTTATACTCAAAAGCCTTCTTAATTAAATTTACATA 3209 24 100.0 35 ........................ GAGTAAGGAAATATCTTATGCGGACTTACGGAAAG 3268 24 100.0 38 ........................ ATCTTTTTGCTGGCACAATACCTTTCAATGCGATGGTA 3330 24 100.0 38 ........................ ACGGCACCAGTAAAGTCCCCACTTTGTGCTAATTGATT 3392 24 100.0 33 ........................ CGGGAGGAGATGCGGGAGGAGGAGGAGGCGGAG 3449 24 100.0 38 ........................ GAAGACATAACGCACACTATCCACTTACCGGGAAGCCC 3511 24 100.0 36 ........................ ATTAAGAGTTAACGAGTTGAAAAAACAGCTTAAAAA 3571 24 100.0 35 ........................ AATTACTAAATGGATTCATAAGGGGAATAGTAAAA 3630 24 100.0 34 ........................ AGTTTTCTGAATACGTCTATCTCTGATGTTAAGA 3688 24 100.0 36 ........................ GAAGCATAGGATAGAGAGCGCAATAGTTACTGTATT 3748 24 100.0 35 ........................ TCAGTGCAGACATAGGACTGTTCGGGATTTGGAGT 3807 24 100.0 34 ........................ ACAGACAACTGATAAGTGCGGTAGACTTACGCGT 3865 24 100.0 35 ........................ AACCTTCTCTTTGGGCATCTTAAGAATTATCATCT 3924 24 100.0 37 ........................ ACAACTTTGACATGACAGCTTGCATCTTTGGTTGTGC 3985 24 100.0 35 ........................ TTGGTAAACTGTATGATATATGAATGCGTATAGGT 4044 24 100.0 36 ........................ AGTGGTGGAGGTGCTCTCAGGGATGAGGCTGTATGG 4104 24 100.0 36 ........................ AAATAAAGCTAAAACACTGGGATAAACTACCTCCAG 4164 24 100.0 34 ........................ TAAAGAGCGTGTTTGATAATTTTATTAGCTATTT 4222 24 100.0 37 ........................ GAGTATGCTCTTTACTACCGTAGACTTGCCCATCCCC 4283 24 100.0 39 ........................ TGAAAGTAAGGGCTCAACTATAGCTTTTACTATCATCAT 4346 24 100.0 39 ........................ TTCGTGGTAGTTGCTCCCAATGCTGTTATTTCTAATATT 4409 24 100.0 35 ........................ ACCAATGAGTGTGGTGGTCAAGGTGAAAGTGGTTT 4468 24 100.0 36 ........................ ATTGATATCTTGCAAGGAGGATTAGACCCACTCACA 4528 24 100.0 31 ........................ GAAAATGTCCCTAGCATTAATATAAATAGCC 4583 24 100.0 34 ........................ TATCTTTGGGAGTAATCTGTCCTTCAATCCAATT 4641 24 100.0 36 ........................ AGTTCCAGCTGGAATCTGAAAAGAGTTAGGGTTTTG 4701 24 100.0 34 ........................ CGAGGGGCTTCGTAGCAGATAATTATGGTCAAGT 4759 24 100.0 34 ........................ CCACTCAGGATTAACAGTCTACTGGGGAGTGTAC 4817 24 100.0 35 ........................ AGGTAATCTGTCAGTATCTTTCGGATAGCCTCTGA 4876 24 100.0 35 ........................ AGTATTGCCACATAGGACGTCCAGTCTGTTCAAAT 4935 24 100.0 36 ........................ GGTATCCCTACTGTCCAAACAAACGTGTCTGCGATT 4995 24 100.0 27 ........................ TAGAGCCCCCAGACCCCAGACCCCAGA Deletion [5046] 5046 24 100.0 37 ........................ AATAACTTGTTGTTGATGAAATTGCTAAAATACTCCA 5107 24 100.0 38 ........................ CTATTGGCACTGATCTAAGTAGATTTGCATCTCCTATA 5169 24 100.0 37 ........................ CATCTTCAGCTGCATTTGGAAACAGATTCTCATTCCT 5230 24 100.0 36 ........................ ATAGCTACTAAATGTGGTGTGGCATGGGCTTCTTGA 5290 24 100.0 38 ........................ ATAGATACATATATTACTGAAACTTCACATCAAGCATT 5352 24 100.0 34 ........................ AATGTTCTTAACAACCTTAGTTTTTTTGAACATC 5410 24 100.0 34 ........................ TTAATTCCAACCAAATATAGGTATAAAGTACTCC 5468 24 100.0 36 ........................ ACGAGACTGCTGAAGAACTAGCCCAAGCCTTAGCGT 5528 24 100.0 35 ........................ CTATCTGATGCCACAAAAGCACCTACTGGGTCTAT 5587 24 100.0 36 ........................ ATCACTTTCGATAATCCTCAAGAAATGGAAAATTAT 5647 24 100.0 34 ........................ TTACATCAATGTTGATGAGAATAACAATATCAAA 5705 24 100.0 36 ........................ TGTGTTAAATTTCCTCCGACTTCATTTCCACCACCT 5765 24 100.0 37 ........................ TACGTGACACCATTAACTGTCCATTTATTTGTATTTA 5826 24 100.0 33 ........................ CGGGAGGAGATGCGGGAGGAGGAGGAGGCGGAG 5883 24 100.0 38 ........................ GAAGACATAACGCACACTATCCACTTACCGGGAAGCCC 5945 24 100.0 36 ........................ ATTAAGAGTTAACGAGTTGAAAAAACAGCTTAAAAA 6005 24 100.0 35 ........................ AATTACTAAATGGATTCATAAGGGGAATAGTAAAA 6064 24 100.0 39 ........................ TATGGATCCCAGTCGCCAGTATAACCGTTACAAAAGAAA 6127 24 100.0 36 ........................ TCTAACGCTGATTTTACTGAATTAGGGCTAGTCATA 6187 24 100.0 35 ........................ TAGAAGGTTTGCATTAACAGTTCTGGTAACCTTCT 6246 24 100.0 36 ........................ TTCGGTAACCTAGAGAAGGAAGCATCTACCGCGGTT 6306 24 100.0 34 ........................ ATATTTTATATATTTCGAAAAGTACTAAAAAGTA 6364 24 100.0 37 ........................ ACCACTTCTGGTACATATACCTTTAATAGTAGTACAA 6425 24 100.0 34 ........................ ACATATACATTAACGTAAGCAGCTATTTCGATTT 6483 24 100.0 35 ........................ GGTGAGCGTTTTTGCTATGCCGAATGGTTGTCCTA 6542 24 100.0 35 ........................ AGTGGTGTCCAATCTGTAAATGCTAATATACTAAA 6601 24 100.0 35 ........................ CCGGAGTTCTCGCGGTAAAGAGTCCTCCCACATTA 6660 24 100.0 37 ........................ TTAGGAGCCACTGTTCCAGAACCACCTGAGCCAGAGG 6721 24 100.0 35 ........................ TCACAATAAAACACATTTTCCTTACCAGCTACAGT 6780 24 100.0 35 ........................ GTTATAATAGTTGTTACATCCAAAAAATGAATAAA 6839 24 100.0 38 ........................ GGAGGAAGTGCTAAGCTGTTGAAGTTCTGGGTCTTCAT 6901 24 100.0 36 ........................ TTAGTAAAAAATTCTACATTTGATGTAAACATTTTA 6961 24 100.0 31 ........................ TGCGTAAGATTTCCACCAACTTCATTACCAC 7016 24 100.0 34 ........................ TTATGTCTTCAACTCCCCTTATTATAGGAGAAAG 7074 24 100.0 38 ........................ TGCAGACGTCTGTAGTTTTACAGTATAATAATATAGAA 7136 24 100.0 36 ........................ TTGAACAGTAAGCCTTATCAAACGGCATATCCAGAT 7196 24 100.0 36 ........................ CTGTAGTTGTTTCCCGTATTGGTAAATAGGAGAAAG 7256 24 100.0 35 ........................ TCAAACTTCTCGGTGAAGAGGACATGGAATGCAGG 7315 24 100.0 34 ........................ GTGCCGGTAGTGCCGGTGCCGGTGGTAGTGGTGG 7373 24 100.0 40 ........................ TTTCCACCATTAAGCGTATATGATGTGCCGTTAAGCGTTA 7437 24 100.0 33 ........................ CCGAAGTGTAGACAGTCTGAGTAAGATTTCCAC 7494 24 100.0 36 ........................ CCCTGAGTTCAGTTTGAGTCTGGTTTGGTAAGGTAG 7554 24 100.0 36 ........................ ATATGGCTATTTTTAGAGCTACAATTTCAACTGTTT 7614 24 100.0 34 ........................ ATTTTCGAAATGCCTTAAGCCCTAACTCGATTTC 7672 24 100.0 35 ........................ AGAAATTTTAATGTGGGGGGTGTATTTACCGCGAG 7731 24 100.0 36 ........................ GAAAATCCCGAGAATTTTGATCCGCTTTTAGACTTT 7791 24 100.0 34 ........................ TACAGGCTAGCATGCCCAATCATCTACCTTCAGG 7849 24 100.0 35 ........................ TAGCTCCAATTTGGTAATTCTACAGACCAGTTGAA 7908 24 100.0 34 ........................ AGAGATCGACAAAGACATTAGGGAACCTAATGAA 7966 24 100.0 34 ........................ ATAAAAATTTCCACAAGAGAAAGCTGAAAAAAGA 8024 24 100.0 39 ........................ AATAACTCTGGTACTGGTATCAGTAATTCTAATCCATAT 8087 24 100.0 36 ........................ TTACATGGTATTGGGTAGGTACAGTTTGGGACAGAG 8147 24 100.0 36 ........................ AATCTTGTTTCCATTAACGCGAGAGCTTCCTCTTTT 8207 24 100.0 35 ........................ TGTACATAGAGAGATGGGGCGATTTTGTTAGAAGC 8266 24 100.0 38 ........................ CTAGTAACCTTCTGGTATTCATATAATAATGGAATATC 8328 24 100.0 35 ........................ TATCTACAAATCGTGTTGTTTAACGATCTCAAAAG 8387 24 100.0 35 ........................ AATCCAAATGATATTATTCAGATGAAATTAATTGT 8446 24 100.0 35 ........................ ATAAACGTAATTGAATGGGACGGCGTATCGGACAT 8505 24 100.0 38 ........................ GCATCAGAAAGGACTTCTGGTTTAGTGGGATATTATGT 8567 24 100.0 35 ........................ CCGACACTGTATCGCTCTCCGTGGACTGACCCACA 8626 24 100.0 35 ........................ GTTAACCCGTTAGATACTAGTGGAAACATTAAGGT 8685 24 100.0 33 ........................ TGGTCGCTACCCGCATAGACCTTCCAGGCAGCC 8742 24 100.0 34 ........................ ATGAAAGATGTTACCATGTGGGATAATCATACCT 8800 24 100.0 36 ........................ ATCTCTAGTTTCCAAAGTAATAAAGGGGTTATCAGA 8860 24 100.0 36 ........................ ATGAGAGATGGAAGATTGATGATAATTCCAATAAAA 8920 24 100.0 37 ........................ AATACTCATATGATTAAGATAACCGGGGTGGTATATA 8981 24 100.0 36 ........................ TCCATCCCCTAAATTCTGCGTTTTGTTTCTTTACTT 9041 24 100.0 37 ........................ AAAATGAATCTATCAATAATATATGGTTTTCTCCAAT 9102 24 100.0 36 ........................ TCGCCAAGCATCGATGGTTACGTCGTATTTTACAAG 9162 24 100.0 36 ........................ AATTAGTGCGGTAGATTTAAGGGTTAACGTATTGCA 9222 24 100.0 34 ........................ AACACAACCACATTGAACTATAACTATACAAAAC 9280 24 100.0 36 ........................ TCTTTTTCATTATTTTTGCTCTGGTATAGACGTCTT 9340 24 100.0 36 ........................ TAAGACTTATCACGCCAGTAACAAATATCCGCTTAT 9400 24 100.0 33 ........................ CCTTATTTACCCAGTAAACATAGAGTCCACTAA 9457 24 100.0 34 ........................ GAGTATCTAAGGGGGTCAAGATAGGATATATTAA 9515 24 100.0 33 ........................ TCACGATGAGAACCGAGGGAAAAAAGGCATATT 9572 24 100.0 34 ........................ TATTTCTGAAATCACTGGCAACTACATCAGCGAA 9630 24 100.0 42 ........................ TTTATGTTTTTGAACCTCCGGATCATCAAAATCGATAATCTT 9696 24 100.0 35 ........................ GCCATTGAGTCAAGTTAGAGACATAGTTGCTACAA 9755 24 100.0 35 ........................ ATGTGAAAAAAGGGAGACAGCGAAAAAGATAATAG 9814 24 100.0 42 ........................ TGGCTTAGGGACTTAATATATCCATGTGGTTCCGTTCCAAAT 9880 24 100.0 37 ........................ CTCTCATCTCAGCAAATAATGCCACTTTCAACAGGGT 9941 24 100.0 34 ........................ CTAACACCCCCACCACCAAAAAACCCCGGTAAGG 9999 24 100.0 40 ........................ ATCGAGAGGAATAAGCGGATATTTGTTACTGGCGTGATAT 10063 24 100.0 33 ........................ TCCATGGGTTGTCCTAGCATTTCGTAATCCTCA 10120 24 100.0 36 ........................ ACACTACACAATAGATATCGCTGATCGTGAAATGCT 10180 24 100.0 33 ........................ TAGTTGCTGCTCTAATTTCTTAAGCCTTAGTTT 10237 24 100.0 36 ........................ TTCTGGATCGCTTGGACTGCTGTGGTAGTAGTCTGT 10297 24 100.0 36 ........................ ATTGCTTGCCAGATCGTTGAGCAAAGGTGATGATGT 10357 24 100.0 36 ........................ TAGCGCATATTCCAGTTGCTTGTAGATTCCTAAATC 10417 24 100.0 38 ........................ GCCAATTCTCTGTTGGTAGCATCTCCTAGTGTAAAGTT 10479 24 100.0 35 ........................ AGTGGAATCCAGGCTACAACCAATATATTAGTGTA 10538 24 100.0 38 ........................ ACTTGGACTGATGCAGTACCCCCAGTAATCGCCTCATA 10600 24 100.0 35 ........................ CTAAATCCAAACATCTCTGAAAGCTTATCGGTAAA 10659 24 100.0 35 ........................ TAAAAACGACACGATGGTAGTGCAAACGGTTGAGA 10718 24 100.0 37 ........................ ATAATGAGGGCTGGCGCTGCGCGGTTTGAACTGAAGG 10779 24 100.0 37 ........................ GCTCCTAGGGACTATTGGAGGGGCATTTATCTTAAGC 10840 24 100.0 34 ........................ GAGGAGGGTAGGTTTGTGGGATGGCGATATCTTA 10898 24 100.0 34 ........................ TTGTTCTCCCCATCTGACACTGTACCTTTCAGAA 10956 24 100.0 34 ........................ CAAAATCCTAATTCTTTTCAAATTCCAGCTGGTA 11014 24 100.0 34 ........................ ACCTTAATATTATTAGTTTGGTAAATGATCTCTT 11072 24 100.0 36 ........................ TGGCTTTTCCAATACCCCCACAACAACAATATCATC 11132 24 100.0 38 ........................ ACGAGTATGTCTGCATAAAAACAAAACAAAGGTATTTT 11194 24 100.0 36 ........................ ATTACTCACAATTGGTGTAGTTATAATTATCCTATT 11254 24 100.0 36 ........................ TGTTTTAATTTAGGATTTATTGGTGAATATGCAATT 11314 24 100.0 35 ........................ TTTCAACGTATTTGTATCCAAAATCTTGTTGACGA 11373 24 100.0 36 ........................ ATGAAAATGAGATACGCCGTCTTAGATCAAAACAAT 11433 24 100.0 35 ........................ ATTAGCCGTAAAGCATTTACAAGGACAAACACAAT 11492 24 100.0 37 ........................ TGGTAACCCAACTTATGAAATTGCCCCCATACCAATT 11553 24 100.0 43 ........................ GCAAGCTGCCGGAGTACCAGGTTGTCTCCAGGCTAGGCTTGTA 11620 24 100.0 44 ........................ GTGGTTACAGCAGCTTTCCCAGTGTTATCTTGTACCAATATATT 11688 24 100.0 35 ........................ ATTTCAGGGTTCTCTCCTAGCTCGATCCACGCTTT 11747 24 100.0 35 ........................ ATAGCAGAAGGTGGTATGTTAAACATAGTAGCAGC 11806 24 100.0 36 ........................ TACTTGCCGTTAAGCCTGAAAACACTGCCATTGATT 11866 24 100.0 35 ........................ TTTGACGCTCCTGCAGGACTTCGATTCGAGATAGT 11925 24 100.0 34 ........................ ACATAAATCTGGGGGCTACTGATTTTCATGGCTT 11983 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 149 24 100.0 36 GTACTAACGACAAGAAACTAAAAC # Left flank : CATCACTCATCGTGTAAAACTTCCTCCTTACGTTGACAAGTGAGTTTAGAAATGGGGAAACGAGGACTACGTCTTTCCTCTTATTGTGTATGAGGACAGGTATGTTAAGGCTTGAAAGAAACAGAATTACATCAGACGTGAGCCTAACATTACTACCAACAATGACTACTAACTCTAAGTCAAGAGTAGAGATAGTCAAGTTCTTTCCTTCAGACCATACTACTTGAATATCCGAACCCTTCCTTGTAACTGTTGCGTTTTTTATAACTAATATAGACATAATAGAAAATTCTGTCTCAAAGATATAAACATTACCGTCAGCTATCGTTCTCTTTGGTATTATGGACTCCCTTCCGGACCCGTGCGGGGATAGCTTTAGGGTTACCCTAAAATTGCCTAAAACCCCCTTCCGTACCTAAGGGAAGAAAATGGATAAGGAAGGAAAGAAAATATTTATAAACGAGGAAATAAGAATGTAAAAATGATGAACACAACGACCA # Right flank : CTTGTAGGGAACAAGATGTTGAGTTTGCCGAAGAGATTGTACTAACGACGAGTGTGTGGACAACAATTTCATCCACCCCCTTAAAATTCAATTTTATTCCAACTTATGTCAATAGATTTCGAGTAAACTGTGTTGAGGAATATTTTTAACCATCTCGTCATTGTGTTTCTTGTTAAGTAAGGTGAGTGCTAGGAAATCAAACCCATTCATCTTCTCGCCCTAATAAAATAACTTAACCCTAAAAATACTTTTCCACAATAAAGAAAATTCAATTTATATCAACTAAATTGTTGTCCACACACACGCTATGAGTAAATCAAGTTAAGTAGATATAGATCTAAAAATAAACTATGGATGTAAGTGTCTTAAATACTGATACTTAATTTACGTTGCCATTACATAAGTAGTTGCTAAAGACTAAAAAGGATCCGACCAAAAACTTAAGTGTAACTTATGCATGTTAGACATTCTTGCTTCATGCCTTTTGACTCTAAATTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 24340-20470 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIMI01000003.1 Sulfolobus sp. B1 NODE_3_length_33890_cov_285.636767, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 24339 25 100.0 42 ......................... TTACGTGGATATGATTTCCCATTTGATCCGCTGGAATGATAT 24272 25 100.0 39 ......................... TTATTGGGACAAAAGAGGAAATTCAACAGTTTATAGAAG 24208 25 100.0 40 ......................... AAAATGTCAGAGAGTTTATAAGTATACGCACTTTGAATAT 24143 25 100.0 40 ......................... ATAATGCAATGAAAGATGTAGCTTCTGTCGTTGGCCCAGC 24078 25 100.0 39 ......................... TTATTATAAAATGGAGGGCAAAGATCTAGATTATATTAG 24014 25 100.0 37 ......................... TCCTTTTTTTATTAAGTGTACACTGGGGAGTAAACAA 23952 25 100.0 40 ......................... AGGGAAGGAGTCACTATATAGTCTGAGGGTTTACCTTGAT 23887 25 100.0 39 ......................... CTATTTTTTATCCCGTGCCAGAGTTCCTGCAGGTTCTTT 23823 25 100.0 38 ......................... AGATTTCGCAAGATTTCGCATAAGATCACAAGAAATCA 23760 25 100.0 39 ......................... GTATAACAGTTTCGGTGTACCTTCTGGCGATGTATCTGG 23696 25 100.0 38 ......................... ACATCTTGAAGTTTAAGGGGTTAATTTTCCATAGGTTT 23633 25 100.0 40 ......................... TTAATCTCTTTATTGCCGAAAAGACCATGTCGTGAGTAAC 23568 25 100.0 37 ......................... TTAAGCCTTTTTGAAAAAATCGAAAAATTAGTTTTTT 23506 25 100.0 39 ......................... TATAAGCTCGCTCCTAGTGATGTTACGTTTCAACGCTAG 23442 25 100.0 37 ......................... TCTAATACGTACTTTTTACCCTTATCCGCACCTTTTA 23380 25 100.0 42 ......................... AGAGCAAATATATCAAACCCTTCCCTAGGTCTTACTCTCAAC 23313 25 100.0 38 ......................... ACTCCATATTTCTCTTTAAACTTCTCAGCTATCCTCTT 23250 25 100.0 41 ......................... AAATGTCCAATAATTTTCCTATTACCAATCACTGACTTTAA 23184 25 100.0 38 ......................... TCATTTGTTTCACCCTTATAATAAGGTAATAATCTTTA 23121 25 100.0 37 ......................... ATTGATTCGATTGCTGGACTCCTTTCCTTATCTCGCA 23059 25 100.0 38 ......................... GAGATTGGAATGATAAAGTATAAGATCAGTGAGATATT 22996 25 100.0 40 ......................... GGTTCACAAAATTTAGGGGGCACATCAAGAGAAAAATAGT 22931 25 100.0 39 ......................... CTAAAATCTAGGGGCTCATAACGAATAATATTCATCACA 22867 25 100.0 38 ......................... ACGTAAACGTTGAGCTCATCTTTAACTACTAGCCTTTT 22804 25 100.0 36 ......................... GCCCATCCTCTGGGATCCTTAATGTTAATAGGGATG 22743 25 100.0 39 ......................... CAACACATTAGAAGACTATGAAGTGTTAGAAGAGAATAT 22679 25 100.0 37 ......................... TCATGACAGTCACAGCCAAGCTCATAGCTCTCTTTGT 22617 25 100.0 41 ......................... GTATAATTTTGTAAAAACATAGGTCTAAAAAATAGTGATTT 22551 25 100.0 42 ......................... ATCTCTGACATTAAGTTTGTAGACCAACACATTTTGTTTACT 22484 25 100.0 36 ......................... GTCTTTTAGTTAACTTGTGACCTGTGAACTCTGCAA 22423 25 100.0 39 ......................... TTGTTAAAGGTTCTTGGCTAAGCGCTATTAGTATGTCCG 22359 25 100.0 37 ......................... TATCTCAACAGTTTCACCATCTCTCATTAGCCACCCT 22297 25 100.0 39 ......................... AAAGAAATTATGAAAACGTATATTAATAAACCTTTTATA 22233 25 100.0 38 ......................... TATCGTTCTTGACTACGGTGCAGACCCAGCATCCAAAC 22170 25 100.0 40 ......................... TAAACTATTTTCAGTTTATTAACATCTGCGTATAAAAAAA 22105 25 100.0 41 ......................... TAAAAAGAATTCATAGCTGTTACTGGGTCTGCTCTCATCAA 22039 25 100.0 41 ......................... AGGATTTTTTGTTTAATTTGGGTTTGTGTGGTTTGAGACTG 21973 25 100.0 42 ......................... AATAGAAATCTTTTGTATAAAAAGTTTATATCATATTTTTTT 21906 25 100.0 40 ......................... ATTTCTTCTAAAATCTTTATACTATAGAAATTGATTTTTT 21841 25 100.0 39 ......................... ACATAAGCAACATTGTGACTCTGTGCCCCATTCGGTATG 21777 25 100.0 41 ......................... AACTGTGTGCTCTGCTGAACTAGAGCAAATGTTTGTTTACT 21711 25 100.0 38 ......................... GTTTACAAAATTGTATGGCAATCATACAGCTTATATGA 21648 25 100.0 38 ......................... TCAATTTTAACATTGGTAATCAGTGACATATAATAGAC 21585 25 100.0 40 ......................... TATGTACTTGTATTTTTGCTAAAGCATAATATTGTGGCTT 21520 25 100.0 40 ......................... TGCTTATCCTCATTTTCCCACTTTAGTAATCCCAGTTCAC 21455 25 100.0 38 ......................... CCTAGGAACGATAGACCGTAAATTACATCAAAGATCCC 21392 25 100.0 38 ......................... TCTCTCTTTCCGTAAACTTAGTAACGCTAGGTGGATCT 21329 25 100.0 38 ......................... TTATAGTTTGATTTAGGTAAAGGAATGTCTCACCACCT 21266 25 100.0 39 ......................... GTCCCCCATGCCCTATGTATGTATTCCTTATACGGTTCC 21202 25 100.0 39 ......................... ATGCCATCAGTTACGAGGATCAGTGTCCTTATCTTCCTC 21138 25 100.0 40 ......................... CTAAATTGTTCCAACCCATGCTATTCCTGTGTCTGCTCAA 21073 25 96.0 40 ....T.................... TCACTTTGTTATTTGTTGTACAAATTGGCTAAGAACACGA 21008 25 96.0 40 ....T.................... AATTCCTGGATTTGGGGATCGATTTGTGCTTCACACATTT 20943 25 100.0 41 ......................... TCAAATTTTATACTTTTACCTTCTTTTACCAAAAAAACTCT 20877 25 96.0 42 ....................A.... TTAGATTTATAATTTTATTCCCTATTTCCGCAGTACTTTTTC 20810 25 92.0 35 .........CA.............. GTAGCTTACTATGTTGAAGGAGTTGGAGAATTAAA 20750 25 92.0 37 .........CA.............. CCAGTAGGCAGTTGAACATATGCTGTTATTGCGTAAA 20688 25 96.0 39 ..........A.............. CCGAAGAGGTCAAGTCCGAATGTGGACTCAAGTAGAAGA 20624 25 92.0 40 .........CA.............. CTTATTAGCTTATAGATATCGTCTACTGTTAAGTTGTCAA 20559 24 92.0 40 .........C...-........... ACAAAACTTGATACATTGAAGTAAACTGGGAATATACTAC A [20550] 20494 25 76.0 0 .....G...CAC.A.......G... | ========== ====== ====== ====== ========================= ========================================== ================== 61 25 98.8 39 GATGCATCCTTAACGGGATTGAAAG # Left flank : TAGTATATATAAAAGGGGGAAAATATAGATTTATTTAGATATAAGAAGAATAGATTTTATATCCTAATAAAACCTTTTTATTCTAACGTCAATCCAATTTTTACGTTACAACGCGCTTATTTAAGCCTCTTTATAAACATAACTATAACGTAGTCTTAAAAATCGTTTTATATATTCTATCATTTTCAATAAATCTTTAAACGTCTTATTACGATGTAACAACCCTAATGTACGTTAATTCAAACAGTATTTATCCGTCTTCATTAAGTGGTTTAAAAGTGTGAAAGTATGAGTCTCAATGCGAGAGTTGCGATAATCATTTGGTGAATTAAACGTTTATAAATTAACCCAAACTTTCAAATAAATTAAAAGTCCATGCGAGGGAAAAACGTTAAAGACTATTACTAGGAAAAACCCTCGCATGATAGGGGAAGGTGAGTAAAGTAAAATTTATTATAGGGGAAGGAGAAGATAAGGCATAGGGGTTAATAAACAAATCA # Right flank : ATATAACACTTCCCCATAAAAAATGGTTCTCTGATTCTCTCGATACACGAGAAATATAAAGATGAATCGATGAAGTAAACTATCTAAGGGGAAAAGGACAGTTAACATGACTGACAATCAGATAAGGAATAGAGTTGTGAAGAAGAGACAGTTGAGTGTGCACTCTTTGGTGGGGGGAGACTCTTCAAGTTTTTAGCCGGTTTAAAGATGTATTATAAAAAGGAGAAAGAGGTTTAATTCTCTAATTGTCTCAGTTCCGTAAACCTAGTTTATTAGTTGAATGGTTGTAGTAAGAGGAGACAATGAATAACTAGTATTTTGTGGTGAGGTTTGAGTTTGTATAAGCCGTCATAATACGAAGTAATTTATTGTTTTGGGAATCTAATAGTTAAGTTACGAAAAAGCTAATAAGTTAACAATTATTACGTATGTGGTCAAGTTAGGGGGGCCGTATACAGATTAAGGGCTTAGGGTACGTACCTTAGAGTAATAATTGTCAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCATCCTTAACGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 4864-11937 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIMI01000018.1 Sulfolobus sp. B1 NODE_18_length_19453_cov_154.948655, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 4864 24 100.0 36 ........................ TCTTGAGAACCCAGCGTACGAATCGCTGGACACTGT 4924 24 100.0 34 ........................ GCCACACATCCACTTTATCACTGTCTGGTAGGTT 4982 24 100.0 36 ........................ TACATGAACGCTATGGGTACACAAATTGTTTCTACA 5042 24 100.0 37 ........................ AAGTGGAATTTGAGTAATGTAACTAATTGGCTAAGGT 5103 24 100.0 36 ........................ ATATTATAGTTTTTGACGTGTTAAAGTGGGGAATTG 5163 24 100.0 35 ........................ CTGTTTTGTCTTAAAGAAGCCTTTAGATACCTCAA 5222 24 100.0 37 ........................ GCAAATTCAAATTGGACACTGATTTTCCGATTATATG 5283 24 100.0 36 ........................ AAGATTATTTTTGCTAGCATAAATCTCTAGAAGATA 5343 24 100.0 37 ........................ CCCTATTTGTCGTGAACTCGACCTCAATCACGTTTTG 5404 24 100.0 35 ........................ GATTTCCGATGATTAGACAGATTAATCCTAAATAT 5463 24 100.0 35 ........................ GATTATTCGCAAGCTGGAATATCTCAGTCGCATAT 5522 24 100.0 36 ........................ TAAAAGATATGGAAGAAATACTAAAGGAGATGAGAA 5582 24 100.0 36 ........................ ACTGACCTAGTAATTCGTAATCCTCATACTTGAGAT 5642 24 100.0 36 ........................ TAAAAATCTTAGCCCCTGGAACACCACCAATACCTC 5702 24 100.0 35 ........................ AAATATCCTTATTATATATACTTGCTCTACGCAAG 5761 24 100.0 34 ........................ ATAAGGGTCTTGTTCGTGAGTGGTGATTCATAAT 5819 24 100.0 37 ........................ TAATAGGGTTGTCCCGAGGGACAACGCTATCATAAAA 5880 24 100.0 34 ........................ AATATCACGCCATTTTTTTCAGACGGATACTTAA 5938 24 100.0 35 ........................ GGGGGCTTTGATGGGCACGGGAGTATAAGTTCTAT 5997 24 100.0 36 ........................ AAAACAAATGATGAGAGAAGAAGGATTTGAAGAATT 6057 24 100.0 36 ........................ AGAAAGGTCTTAACAGAGAAATACAAAGGAGAAAGA 6117 24 100.0 37 ........................ ATTTCACACTTCTTTCCGTTTCGCTCTTTCTCATAAT 6178 24 100.0 33 ........................ TCAGTTAGAGAACACGTTAGAAGCGAGAGGAAT 6235 24 100.0 37 ........................ AACCAAAGATGGGAAATATCTATATGAATGTGGAAAA 6296 24 100.0 35 ........................ ATATTAGGGCTATCACTGCAGCGCCACCACCACCT 6355 24 100.0 37 ........................ ATTGCCAAAAAGCTAAGGCAGGCAGGAGTGCAAGCAT 6416 24 100.0 37 ........................ AACCTTCAGAATTGGACTATTGCGAGAAAATAACGGC 6477 24 100.0 35 ........................ AAATCGCTTATTTTAGGACGCATCACAAAGTTAAG 6536 24 100.0 35 ........................ CAAAGATTTTACCCCTATTATATCTAACCTTAAAC 6595 24 100.0 36 ........................ ACAAGAAATGATGGGACATCCCGCCCAAGAGGAAGG 6655 24 100.0 38 ........................ TAACCACAGCTCCATCTGGTTCTCATTTCAATTCTCCA 6717 24 100.0 35 ........................ ATTTACCAAATAATCTCATTTGAAAATCCACAAGA 6776 24 100.0 37 ........................ AGAAGGATTCCACTACCTCCTGTAACTGCTGAGAGAT 6837 24 100.0 36 ........................ ATCTCTTACTCGAGACCGTGTCAGAGAAATTAAATA 6897 24 100.0 35 ........................ TATTGTGGGGTCTAGTGAAATCATCAGTACATCAC 6956 24 100.0 39 ........................ CTGGTACAGCGCCGGGAGCTGGCACAGCAAATACCGGTA 7019 24 100.0 35 ........................ TGGGCTAGCGCCAGTCAAGATGAGTGTGGATTCCC 7078 24 100.0 35 ........................ ATTTCTTATGATATAAGAATCCGCTCTTACTCCTA 7137 24 100.0 35 ........................ ATTTATAATTCCAACCGCGACGGGTACGGGCATTC 7196 24 100.0 36 ........................ ATCCAGACTGGAGGAGGTAACGCTTTTGGTAACCTA 7256 24 100.0 35 ........................ AGATAGAAATACATGTTTCCAAACCTAGTAATGTT 7315 24 100.0 36 ........................ CCAACATCGGAAACACTATTCTCAACGGGCTAAATT 7375 24 100.0 34 ........................ ATACTTACGTTTTGTGTCGCGGGGAAATTACTTA 7433 24 100.0 34 ........................ ATTAACGGATTACTATAGCTTACTGTCCATGTCG 7491 24 100.0 35 ........................ AACGATAAGGATAGATCTTCTGAAGAATGATTTAG 7550 24 100.0 34 ........................ CTCTGGGTTTCTGTGTGTGTATATATGAGAGAGA 7608 24 100.0 38 ........................ TCTTCTGTCTTAGGTCTATACGTTTCTATGTCGAAATA 7670 24 100.0 36 ........................ CTGCACAACCTAAGATGCAAGCCGTGATGAGCAAAT 7730 24 100.0 38 ........................ GCTGGTAAGCACAGCACAACAACTACAGACTGCAGTCC 7792 24 100.0 36 ........................ TTGAAGAGTGTCAATCTCGCTTTGCACTTCTGAGAT 7852 24 100.0 31 ........................ ATCAACTCGGAGGAGGGGGAGGAGGAGGTAC 7907 24 100.0 36 ........................ AGAAAAAGGGGTATCTGATATACCTATATAATATAT 7967 24 100.0 35 ........................ CCATAATCCCTCTGAATTAAGCCCATCTACCCTAT 8026 24 100.0 37 ........................ CCACAACGGCTTAATCGGAAGCCTGTACCCAAACTTC 8087 24 100.0 34 ........................ TGTGACCACAAACTGCTCAAGGTTGATTGAACCT 8145 24 100.0 35 ........................ ACAAATATAATTACAGGATCTCCAACTGGTTACGT 8204 24 100.0 35 ........................ CTGGTGCCTGTCCTACTATTGGGATTAACCCACTG 8263 24 100.0 37 ........................ TTGGCTTTTCCGATACCGCCACAACAACAATACCATC 8324 24 100.0 36 ........................ TCACTTCAATTCTCCAAATGCATTTTATGCAAATTC 8384 24 100.0 33 ........................ GTGCTAAAGAGGCTCCATAGAAGTTCAGAGTGT 8441 24 100.0 37 ........................ TTTTGATATCTCTTCAATATGATAATGCGATTTCAAA 8502 24 100.0 35 ........................ TCGATAAAGTTATTTATAGCATTAAGAGCGTAGTT 8561 24 100.0 35 ........................ ATTGGAATGAAATACCTAGCCTCAAGTTCTTCCCT 8620 24 100.0 35 ........................ TTTTTGCCAATTTCTATATCATTTACAATATCATC 8679 24 100.0 34 ........................ TTACTGGTAAATAGAGACACTTTCTACTATCAAA 8737 24 100.0 39 ........................ ATCAAGTGTTTTCAGAGTTTGAAAGCGGGTGAGAATAGT 8800 24 100.0 37 ........................ ACAACCCTGGACTTACAGATACCTTAAAGAAGGAAGA 8861 24 100.0 35 ........................ TTTATCTCAAGTGGAATGTTGTGACATAATATATC 8920 24 100.0 34 ........................ AGAATCTCATTCTTTGCAAAATCAAACTTAGTTT 8978 24 100.0 35 ........................ AGGCTTGAGGAACTCCCAGCTGATTACTATACATG 9037 24 100.0 36 ........................ TGGTAAAGTCTGTAGCCACATTAACACCCACAAGAG 9097 24 100.0 36 ........................ TTCAAATCGCTATAAAGTCGTAGAGATGTTGTGTAT 9157 24 100.0 35 ........................ GTGTAAAGTGCGATATAAGTCGATATTGAAACAAG 9216 24 100.0 34 ........................ GTGGAGGGGCGGGTGGTAGTGGCGGAAGTTCTCC 9274 24 100.0 42 ........................ ATTATAATTATCCTATTGTTGATATGGTTCTTATTCTTTAGG 9340 24 100.0 37 ........................ CCAAATGCCGTAAAGTATCTATCTAGCCTAGTAAGAT 9401 24 100.0 36 ........................ CTAAAGCATCAAATCCTTTTAATGTAAATGCCCCTA 9461 24 100.0 36 ........................ TGTAAGACTGCAAGCGTTAGCTGGGGAAAACAATGC 9521 24 100.0 37 ........................ AGAGTTATCTTGAACCTCCGTTCAACCTAGATTTATT 9582 24 100.0 38 ........................ ATCTGTTTTCTGATTGTTATTGTTTGCATTTTGCTGTA 9644 24 100.0 36 ........................ TAAATGTCCTTTACCCCAGTCTTTATTACGATATCT 9704 24 100.0 37 ........................ ATATCACACAAAGATTTCAAAAATTATACTGTACCCC 9765 24 100.0 35 ........................ ATTATTACGTTGTTTATCGGGACAATTGATAAATC 9824 24 100.0 36 ........................ AGAGCTAGGGCTTATCTTCCTCAAATGCCTACAGTC 9884 24 100.0 37 ........................ AGGTGATTCGATCTCGATTATAACTGCTTCTGAATAT 9945 24 100.0 38 ........................ ACTTATCTTCTGAGCTAGCCACTTCATTAGGTAGGTTT 10007 24 100.0 37 ........................ CATAGTCTGGAAAGCTTTTTCGGTAAGTTTCACATAT 10068 24 100.0 35 ........................ AATATCAACACTGAAAGAGACACTACCTAGCGCAT 10127 24 100.0 35 ........................ TATCGGATTTTCAGTATTCTGTCCGCATATGGTAA 10186 24 100.0 36 ........................ GGTTATCCTGTATCTCGCTGTGTCCTCGTCATACGA 10246 24 100.0 34 ........................ AAGCTGATCTATCGCCTCGTTGTACGCATCTATA 10304 24 100.0 36 ........................ GAGTAATTGTACGCTACGAAGACCCTGGCGAGCCCT 10364 24 100.0 34 ........................ AGATGAAGGCTAATGGTATAGAGATATCCTATAA 10422 24 100.0 34 ........................ TTTACAACAATTACCTGGTATATACAGCGAAATC 10480 24 100.0 37 ........................ CAAACGTTGCAGAGGAACATTAATAACTTACAGCAGG 10541 24 100.0 39 ........................ GTTTGCGCCATCTGTTGTACAGCGTTACTGAATGTATAA 10604 24 95.8 35 .......T................ ATTGTATCCCTGCGCTACGTATTGTAGAATTTGTT 10663 24 100.0 36 ........................ AACACTACATTACAGCCTTTCCCATTAAACCAAAAC 10723 24 100.0 40 ........................ TTAATAAAGCTGTGCAGGTAATGTCAGACAGTGCAGAAGT 10787 24 100.0 34 ........................ ATGGCAGATCGTGAATAAACTTGAAGAGATAATA 10845 24 100.0 34 ........................ TGCTAAAAGTCACCCTATCTGGTGTGCAATCAGT 10903 24 100.0 37 ........................ ACTTTTATGATGCTGTTGAGAACATTTACATCAAAAG 10964 24 100.0 34 ........................ ATTTGGGTTGCCAGTGACAAATAAATACAACAAT 11022 24 100.0 40 ........................ TCAAATATTTTACAAAAACTGGTAAATTATTGCTTTTAGT 11086 24 100.0 35 ........................ ATAGCCTTTTGGAAGCCTTCCTATGTAAAACCCTA 11145 24 100.0 34 ........................ TCATAATAGAACTCCATTAAGCTGTTAACCCCTT 11203 24 100.0 36 ........................ TTTCTCAAAATTGTGTATTGCATAACGTGAAATATC 11263 24 100.0 35 ........................ ATTAACAAATAACGTAGAATATCCCCTGAGAAAAT 11322 24 100.0 38 ........................ GTTATAAGTAGCTTCTTATCTGTCCTGGCTAGCTCTTT 11384 24 100.0 34 ........................ ATTTCCGAGAAATACTGAAAAGGATTACAGAGGT 11442 24 100.0 34 ........................ GTATAAATGGCTGTTCAGGAATCAAAAAGATACA 11500 24 100.0 35 ........................ TTCTTTTTCTGCACTCAATAATTTAAATGTTAAGC 11559 24 100.0 36 ........................ TTTGTGAAATTCTTAATTATATTAATAGGATTTATC 11619 24 100.0 34 ........................ AAAATAAGTTGGGTCTAATCATAATTACCGGAAG 11677 24 100.0 36 ........................ CTCGCATCGTAATGGGTTTGAAAGATCACGAGGCAT 11737 24 100.0 36 ........................ TACCTGTTCCGCGATACTCTCTTCAGGGCTGTTCAG 11797 24 100.0 35 ........................ ACTGTTACATACATAGGTGAAGTGTAGTTATAAGT 11856 24 100.0 34 ........................ TAAGCTTTGCTCTGAGAAACCTAACGTGGCCTCA 11914 24 95.8 0 ......................C. | ========== ====== ====== ====== ======================== ========================================== ================== 119 24 99.9 36 GTACTAACGACAAGAAACTAAAAC # Left flank : CTGGCAAGGAAGAGACTACCTTCAAGGAGTCAAACCCAGGATTAGAAAATGTAATTTCGGTAAGGGTGACAAATTTATTGTCGTATAAATAAATAACCCAAAAATACTTTTCGACTATAAAGAAAATTCAATATTTATCAGGTTGTCTATACACGTTTTTCCTCTCTACGATGTATGTATTAAAAATCTTCTAATTATTAACGGCTGTTATATAATTAAGAGTAGAAATAATGTGAAAATGTGTTATGAAATATTTAAAGGTTATCCTATTCCTATTGTACATTTATTAGCCCCATCCGGGTTTAGGCAAAACGGTGAACAAAGAACGAGTAAAGAGTATTATGGACTCCCTTCCGGACCCGTGCGGGGATATCTTTAGGGTTCCCCTAAAACTGCCTAAAACCCCCTTCCGTACCTAAGGGAAGAAAATGGACAAGGAAGGAAAGAAAATATTTATAAACGAGGAAATAAGAATGTAAAAATGATGAACACAACGACCA # Right flank : CTCCTAATTGCCAAATCTTTATAAGGGGGAGAGATTAATTATGTCTATGGAGAAATCCGTCACGATTCACCTCCCATACAGCAACTCTCAGCTGTACTCAGTCCTTTCGGACCCGGAGTTTGTGCTCCCCAGGCTCTTCCCACCTATAAAGGAAGTGGAGGTGACCGGCGACTCCTTTAATGCATACGGAAGGTTCATGGGGATGAGGTTCCACATCTACGGGATACTCAATAAGGGAGAACAGATAACCTATAAGATCTACCTCACAGCCGGTACCGGGAAAGGGGAGGGGAAACTCGTAATAAGAGTTGCTGACTCTCAAGTGGAGCTCAGGTTCGAGTACGAGGGTTGGATGGAGAGGTTCTCTGGGATCCTCTTCATGGATAGGTGGTTCGACCAGTTCGTCAAGAGGCTAAAAGAGGAAGGAGTTACCACAGGAGGTAAATAGGAGGCTGTAGCTGGACTTTCGAACCTGTTGGTCTTGCTAGCCTAGAGAAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 19453-16054 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIMI01000018.1 Sulfolobus sp. B1 NODE_18_length_19453_cov_154.948655, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 19452 25 96.0 40 .............C........... TTACTTAATTCGAATGTTCCATAATTCACAAAGACTTTAG 19387 25 96.0 40 .............C........... AAATAAGCATGACCTTTTATCGTGCCAAACATATAATCAT 19322 25 96.0 40 .............C........... AAAAGTAAAACTAATTGGGGGCTAATAATAGGCGTAGTAG 19257 25 96.0 38 .............C........... CTGTTATCGAGATATAATGATATTCTCCCATTCTGTAT 19194 25 96.0 39 .............C........... ATAATGTCTTTATTTGAACTACAGAGGAATGGATGTCTT 19130 25 96.0 39 .............C........... TACAATTTCCAGCACGTCAGACATACCCACTATGTCTAG 19066 25 96.0 37 .............C........... TAATTTTTATAATTTCATCAGCAGTAACACGATAAAA 19004 25 96.0 39 .............C........... ATGTCTCATCGTCGGCAGACAGTGCTCTATTCATCTCAA 18940 25 96.0 38 .............C........... ATCAGTGGCTTCAGTCTTCTCTTATAATTCTCATACCT 18877 25 96.0 41 .............C........... TATGTAAAATTTAGGGAAAATACCTAGAGGTCCAGTAAGAG 18811 25 96.0 39 .............C........... AGTATATGTTCAACAGCTGAGAGACATTAACATTTTGCT 18747 25 96.0 38 .............C........... AATTAATATATCTTCTGCGAGAGTTAGAGCCATTTTTT 18684 25 96.0 39 .............C........... TCCCCATCCCCTTTGCTATCTCTTTTACCTGTGTCGCCG 18620 25 100.0 40 ......................... TGATTCGTTAAATCGGGGAATTTAACGCGTTCAAACATTT 18555 25 100.0 39 ......................... TTTTCTTCTTCATTAGCAAAGCGTACGCAGCTATACCAA 18491 25 100.0 37 ......................... TTTATATCATCATCTTTCCGCATAGTCTCGGCGACCC 18429 25 100.0 36 ......................... ATATTAGCCAAAAGCCCCTTAAAGACTGACTTTCTC 18368 25 100.0 39 ......................... GCGTTTCCACTGGCATAAGAACCACCTAGCTCTATTGGC 18304 25 100.0 39 ......................... GATATATATGTACGACCATCACGAAACAAACCTAAAGTT 18240 25 100.0 41 ......................... CACGTTACCAGTGCAATAGCGAGTGACTACAAACGAATACT 18174 25 100.0 40 ......................... CGGTTTGACAATTATGAACGTATCGGTTTGCTTAAGCAAT 18109 25 100.0 43 ......................... ATAGATGAATATTATAATCCTATAATTCCCCCATTAATCTTTC 18041 25 100.0 40 ......................... CATCATGGCAGGGTCTTGACGCTGAGATAACAGCAATAAA 17976 25 100.0 40 ......................... AAGATTTCTACTAACTTTTGCATTAACATCTCTCGCTTTT 17911 25 100.0 40 ......................... TTGTCAACCTCGAAGTAGTACGGTATGCTTGCTAAAACCT 17846 25 100.0 40 ......................... ATTCTCGAAAATTGCAGTTGTGTTAGATGCAAAAATTACG 17781 25 100.0 42 ......................... TTACAAAATCTGTAAAGTAGTTTTTCTGTAAAGCTAAACTGT 17714 25 100.0 41 ......................... AGTTCTGTCTTGAACGCTGTTCTATTTCTCCATGTCTCTAG 17648 25 100.0 40 ......................... ATCGTCAACTACAACATATAACAATTTACAGATTACATTT 17583 25 100.0 41 ......................... CTATATCTTGTGTTGTGCTCTTTAAACATGGCTTTGAAAAA 17517 25 100.0 43 ......................... TTATGAATGTGGTAGATGCCATCTGGTATTGGCATTAGAACAA 17449 25 100.0 41 ......................... TCTTTTAACGCGTTCAAAAATATTTGCCATACCCCTATTTG 17383 25 100.0 43 ......................... AAGAAACAAAATTATACATAAGTAATGCCAGCTTACTTTGTGT 17315 25 100.0 40 ......................... TAACTAACATAGTAACCATTCTGTGCCCATGGCTCCCACT 17250 25 100.0 37 ......................... CCAACCCCAGCTGTTAGGGGGGAAGAGCCAGCAATCG 17188 25 100.0 39 ......................... GAATAACACTGTTTATATGATTGATCACCATGAATCAAA 17124 25 100.0 41 ......................... ATTGGGATTAGCTAGAACTTGTGCACTTTGAGGGATAACAT 17058 25 100.0 39 ......................... ATTCCTTTCTGCATTTTTACGTAATCTGGTTTATCGTAA 16994 25 100.0 39 ......................... ACCGTATAAGGCTGATTTTGTGGTTGTGCAGAGATTATT 16930 25 100.0 42 ......................... TTGCAGCTACATTTGGATGGCTCAGTGCGAAGAATGATACGT 16863 25 100.0 40 ......................... CCTAATTTCTCTGTTGGTCTATTCCAGCCTAGTAGTTCCT 16798 25 88.0 41 ..........CA.C........... CTGTGATGTTTCTCATGTTATATATGTCCAGCTTCCATTCT 16732 25 88.0 36 ..........CA.C........... TTATTTCCTAAAATTTGGATGTGCCTACTGGTATGA 16671 25 88.0 40 ..........CA.C........... AGACATCCCCCTTTCTTTCCCTAACCACTCTGGCTTAAAG 16606 25 88.0 41 ..........CA.C........... ATTGCTAACCAGTACTCATCTGTTCCTTTTCTTTTTCCCGC 16540 25 88.0 41 ..........CA.C........... CTCTACTATTTGATTTGCGATGTTCATAGCGTCGTTTTCAT 16474 25 88.0 39 ..........CA.C........... CGTTTGAATATATTGTTGTAGTATGTCTAACGCCTTTAA 16410 25 100.0 39 ......................... CCTAGACTTCCTACTGCCACTAAATATACCGTAACTCCT 16346 25 92.0 40 ...........A.C........... ACTACTGATCTCTATAGTGATAAGGGAAGAGATAGGATAT 16281 25 88.0 44 .........A.AT............ GTGAAACTGTTCTGCATTGATGTCACTGCAGTGACAGTCGTATT 16212 25 92.0 44 ...........AT............ TTGGACTTATATCCTCTTCAGGGGTTTGGGAAACTTGCGGGTTC 16143 25 88.0 40 .........A.AT............ GTAGAGTTGAGTAATCCCATAGTATGGAAAATACTGTAAC 16078 25 84.0 0 ....T...T..A...A......... | ========== ====== ====== ====== ========================= ============================================ ================== 53 25 96.6 40 GATGCATCCCATAAGGGATTGAAAG # Left flank : | # Right flank : GAGCTGTCTATAGCGCATTTGTGTTCAACTAATCTACGAGAGATGCATCCTAAAAGGATAAAGCACATAAATCCTTTTTACATGGTAGCTGGAGTTAGGTTTAATTCTGTAGCTTCATCTCTTCACAGTTAACCCTTACGTAACCCTTATCTAATGAACTTGGAAAAGTTATATTCTTATTCTGATAAAGTGGGGGAGTCAGAGTAGCTTATCATGAAAATTTTAAAGCAGTCAAAAAAAGTTGGCGAAGAAAAGATAGAAACCATTAATTTATCTTGAATTTTATTATTAATGTACGAAATCAATATATGATACCGTGTTTGCTTTGGTTTTAATAATCCTTCCATTCAATACTCGAAAACTGTTACCCTCAGTCTCCCTTATTAAGTTCTCTAAAATCTTAGATTGCTGGGTTTGAAGGGAGTATATTACCGGTAAGTTTTAAGAAAGTTTTCATCTCATTAATTTTATACGGATTATTATATACACAGTATAGCTCT # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCATCCCATAAGGGATTGAAAG # Alternate repeat : GATGCATCCCATACGGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //