Array 1 77405-78287 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAQ01000003.1 Apilactobacillus timberlakei strain HV_28 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77405 29 100.0 32 ............................. TTCCGTGGGGTCAATATGCACCTGCAAACTCA 77466 29 96.6 32 C............................ TAATTTGTTCATCACTTAATAATTTACCGATA 77527 29 100.0 32 ............................. CTAGAAAATGTGGAGACTTTCTTTTGTACTTC 77588 29 96.6 32 ..................A.......... TTAATTCATTATTCATGTGTATTGCCTCCTAC 77649 29 100.0 32 ............................. TTAGCTGCAATACTATTTATATTAGGATTTAT 77710 29 100.0 32 ............................. CCTAAATCAATCATCAAATTTTTAGAAAAAAT 77771 29 100.0 32 ............................. CAAGGCAACCTAGTTGATGCAATTAAGAGTGA 77832 29 100.0 32 ............................. TGATGTTTATAGTAGGCTTGTACTCAACTTTA 77893 29 100.0 32 ............................. CCTTATTATCCGAAGTCGTTAACTTAAACCTT 77954 29 100.0 32 ............................. TTGCACTAGCAGAAGCAATCCCAATACTTATA 78015 29 100.0 32 ............................. TGATTATTTGAATTTGATTGTTTGCTAGCATC 78076 29 100.0 32 ............................. CTTAAGTCTTTTCCTAAGCTTCCAACTGTATT 78137 29 100.0 32 ............................. CATATCGTACAGACGATGATCAATATACTTTA 78198 29 100.0 32 ............................. AAAAATGAAACTATTACTAAAACTTATCGAGA 78259 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 AGAATCACTCCCGCGTATGCGGGATAAAC # Left flank : CTAACTTAATTAAAAGTTTGGACCGGAATACCCTGAATAGAGCTATCCGTGAACGCATAATAGCGTGATAACTATTTTGGTCTATATTACTGGAACAGCTTAAATAAAAGAAAAATAAATAATAAAAAAGATAAAAATCTAAAAAGCTATAATGATCATAATAAGATAAAAGACTTGCTGATAAAGCAAGTCTTTTTATTTATCTTTCTTTTTGTTGGAATAATGAATACCTACGCAGCAACCAATAAAGATAACGATAAGTAATGTATATTGACCAACCGTATCCCAATCGACATCATCACCACCCAATAGGTTAAATAAGGCAATACAACATAAAATAAACAAGATAAATTTCCACATTCTAAATATTAAACCAATGCTATTGCCAAATAGTGATAGTAATTTTAAAAAGTCCATATGTATCCTCCGAGATTAATCTACTAATAATTATATTAGAATCAGCTTTTATTGGCAAAGTAAATATAATTATTTTTATGTAT # Right flank : CACTAAAAGAATGCTGAAATATCAAGCTTTTCTTTTTAACTTTCTACTAAATCCATTCACTTTCATTGCCAGTTTACACATTAATTTAGAATCCAATAAAGCTCGATGTGGAACCGTAGTATCAATTCCATAATCAAGCAAAGCAGTTTCTAATTTATAATTAGGTAAAAACATTTTTTCTTTTTTCACTAATGGTAAAAGATCAATATAATTATTCGTCAATGGTTTCAAATTATGTTTTTCTAAATTGTAATTCAAAAATTCAATGTCGAAATTAATATTATAACCAATTAAAATTTTATTTGAAATAAAAGATTGAAATTTTTCTAGTGCTGATGATAAATCTATTCCTTTATTTTCTAACATATCATTATCTATATTAGTAAGATTTATAATTTCTTCAGGCAAATTATATTTACTATTTATCAAATAATTAAATGATTTTTTATCACCATTAGACAAACTTAAAGCCCCAATTTCAATTATATGATTAGTTCTAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACTCCCGCGTATGCGGGATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 88729-89125 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAQ01000003.1 Apilactobacillus timberlakei strain HV_28 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88729 29 96.6 32 ...G......................... CCAGCAATATAGAGGGATGTTTTTTGCTAATA 88790 29 100.0 32 ............................. TTAAAGTTTTTAAGGGGAATAGTATTTAACTC 88851 29 96.6 32 G............................ ATAAAATACGTTCCAACTTTTATAGATAATAA 88912 29 100.0 32 ............................. TCGTTTTCTACAATACCTTGGGCAGTAGAATC 88973 29 100.0 33 ............................. TTCGGTAATCGCATTGAGCGGTTGCCCCCTTTA 89035 29 100.0 33 ............................. TTCGGTAATCGCATTGAGCGGTTGCCCCCTTTA 89097 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 AGAATCACTCCCGCGCATGCGGGATATAC # Left flank : AACAGACTCATATCCTCCATTTGTAGAAATTACGCCATACCAACCATTTTTTAGATGTTTATATTTATATTTTATAGTTAAACCCTTGCCATTATTCTGATTAAAATATGCATAGTTTTTTCTGATTCTATAAACAAAATTTTTACTAAAACCTTTTTTACCATACCAATTGTGTCTATATCTTAATGGAACAGAAATGACTTTAGACTTTGCATTAACATTATTAATGATAAATGATGAACCAAGTGTTAAAACAGAACAAATTGTTATGATAATTTCTAAAGCTATTTTTTTCATTAAATATCACCTTTCTAATTTTATTAATATAATTATACACTCTAGAATCATTAAAAAGATAAATAATAGTTAAATCCATAAAAAGGAGAACTTTATCTTGTTTTTTTATCTAGTTAATAATTATTATTTTTTATTAATATAAAAGCTAAACTAGTAAAGAAGATTTTGAGAATAAAGTTGTATAAATAATTATAAAAATATTT # Right flank : CACTAAAAGATTAGCGGCAAATCAACAATCCAGAATTGCAGATCAAGTATTTTCATTCACTTTTATTATGATAGCATATCCACAAATTAATTAATATAAAGTTATAAATGTATAAAAATTAATTTTGCATATATAATTAATTTTCTTATTTACACCCCACTCAAAAACCGCTATACTTATAAACATACAAAAATAAAACATAGAAAAAGAGCGTTGATCAATAATTACGACCAATAATTATTGACCAGCTAACAAAGTAATCGCACTTACTTGTTAACCTTTAACGCTCCTTAGTTATTATATAAGAGCTGAGGAGTAGTTGCAATATATCTAATACATATATGAGGGGACAAGTTTATTACTTGTGCCCTCTTTTTCTATCCCAAAGGATGGATAATAATGAACCAATTTATTAAATTTGATGTTGAACTACGTAAAGATGACCGTTTAAATAATGATACGCGCTTAGCTTATGCTTACTTATACGATCGGATGCATTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACTCCCGCGCATGCGGGATATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //