Array 1 411674-412130 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001984.1 Dickeya sp. MK7 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 411674 29 100.0 31 ............................. GGATTATTTGAATCCTTTCTTGCCCTGAGGA 411734 29 100.0 33 ............................. ATAAAAACCCCTCTTGTAGCGCGAGATGAAAAT 411796 29 100.0 32 ............................. TTGAAATGGTCTATTCGCAGGTTGAAAGCGCC 411857 29 100.0 32 ............................. GACCACCTGGGTGGCTGGAAAAATACGCTGGA 411918 29 100.0 32 ............................. GACCACCTGGGTGGCTGGAAAAATACGCTGGA 411979 28 96.6 32 .................-........... CAAGGCCGCCCGTAGCCATGCCAATGAGTCCG C [411984] 412040 29 100.0 32 ............................. GCGAAAATAGCGATCAACAACTGGGACGGCAC 412101 29 100.0 0 ............................. | C [412106] ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAAGACGTGCTGGCCGCCGGCGAGATCGCGCCGCCACAGGCGCCGCCGGACGCGCAACCGCCGGCCATTCCCGAGCCGACGCCGTTTGGCGACGCCGGTCACCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTCACCGAGAATGTGCCGCCGCGCCTGCGTGGTCGGCTGGCGATCTGGCTGCTGGAGGTGCGCGCCGGCGTATATGTGGGCGACACCTCGCGTCGGGTGCGGGAAATGATCTGGCAGCAGGTGGTGGAACTGGCGGAGCAGGGCAACGTGGTGATGGCCTGGGCCACCAATACCGAATCCGGTTTTGAGTTTCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGACCTCGACGGACTGCGGTTAGTCTCATTTCACCCTGTTGAAAATCAATAGGTTAGCGTTCTTTAACAACCGGAAAAAATCGGTGGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATATTTTTAGA # Right flank : GACATCGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCGCCAGCGGGGATAAACCGGATGCAATGGGCACCATCCTTACCGTACTGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGTTATTAAGTCCGGCTCGGTTAACGATACGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTTCCGCGAGCAGGCGCTTGCATCAAACCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGGTTTGTACGCCGATTGGCCGACCAAAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAATGTTCCGTGGAATTACTGGAATGAGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGACAACGGCAGCTGGCATATGGATGCGTATGTGTTCCCCGCGCCAGCGGGGATAAACC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 412297-412813 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001984.1 Dickeya sp. MK7 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 412297 29 100.0 32 ............................. TGGTTATTAAGTCCGGCTCGGTTAACGATACG 412358 29 100.0 32 ............................. AGTTCCGCGAGCAGGCGCTTGCATCAAACCTG 412419 29 100.0 32 ............................. GCGGGTTTGTACGCCGATTGGCCGACCAAAGC 412480 29 100.0 32 ............................. TTAATGTTCCGTGGAATTACTGGAATGAGCGG 412541 29 100.0 32 ............................. TGGACAACGGCAGCTGGCATATGGATGCGTAT 412602 29 100.0 32 ............................. AATGGCTGGAGTGGGTCGCAGGCGATAAAAAA 412663 29 93.1 32 ............AG............... GTGCAGAAACGGGCTTTAGTGGATGGGAATCG 412724 29 100.0 32 ............................. ACACGACGGCCGTTTACCTGGTTGTACAGGGC 412785 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTCCCCGCGCCAGCGGGGATAAACCGTTGAAATGGTCTATTCGCAGGTTGAAAGCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGACCACCTGGGTGGCTGGAAAAATACGCTGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGACCACCTGGGTGGCTGGAAAAATACGCTGGAGTGTTCCCCCGCGCCAGCGGGATAAACCGCAAGGCCGCCCGTAGCCATGCCAATGAGTCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGAAAATAGCGATCAACAACTGGGACGGCACGTGTTCCCCCGCGCCAGCGGGGATAAACCGACATCGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCGCCAGCGGGGATAAACCGGATGCAATGGGCACCATCCTTACCGTACTGGA # Right flank : GTTGATTAAGATAGCCTGATCGGCGACCGGTTACGGAAAAAGCCACTACTCAGGTTTGGGTTAAAACGCGTGCCAGTCGTCCTCGCTGCCTGATGCCTTGCCCGATGATGCCGCCGGTTTTAACGCCAGTGTTTTCGCGGCGGGTGGGGCGGAAAGCCGGGGTTTGTTGCCGGGTGCGCTATAAGCGCGGTGGCTGGTTTCTTCCTGATGGAAGATGCTGACCACCTGTTTTAACTGTTCGGCCTGCTGTTGCAAGGCTTGCGTGGCGGTGTTGCCTTCTCTGACCAGCGAGGCATTTTGCAAGGTGGTTTGCTCCATCTTATTGATCGCCATATTCACCTGTTCGATGCCAAGCGACTGCTCCTGACTGGCGACGCTGATTTCCCCCACCAGCTCGCTCACTTTGCGCACGCCATCCACAATTCCCTGAATTGAGGCGCCGGCTTTTTCCACCAGTTGGTTCCCGGCGTCCACCGTTTGTACCGAGTGACCGATAAGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 671513-672254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001984.1 Dickeya sp. MK7 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 671513 29 100.0 32 ............................. TCAGGCTGAACAAAATCACACTCCCGGAAAGC 671574 29 100.0 33 ............................. ATGGCAGACGCTGCCGCGAAAACCGGGGTCTGC 671636 29 100.0 32 ............................. GTTGAATGTTTTTTCATACGGACCCCGCCAAC 671697 29 100.0 32 ............................. GCTCTTTCAGTCGTTCCAGAAGATAATTCATA 671758 29 100.0 32 ............................. CGGGATATTTCTGTCGCCGATAGCGTCTTCGT 671819 29 100.0 32 ............................. ACGTTGTCGTTGCTGTAATCCGTCTGCTCGAC 671880 29 100.0 12 ............................. ACCGGCGATCTG Deletion [671921] 671921 29 72.4 32 ..CC..GA.C.C.TT.............. GTGCCCCCGGCTTTACTGGGGCGGTATTATTA 671982 29 96.6 32 ............C................ CGACTGACAGTAAACCGCTCGAAACTGCTGAT 672043 29 96.6 32 ............C................ GGTCACGCGCTGGTGTCGTTTATGGATGGTAC 672104 29 96.6 32 ............C................ GATTTTGGCACGCTGGCGAGTGAAGTCGATCG 672165 29 96.6 32 ............C................ TCTTCCGGGAGTTCTGACCAATAACAACTACC 672226 29 86.2 0 ............CT...........G..T | ========== ====== ====== ====== ============================= ================================= ================== 13 29 95.8 30 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TTCTGAACAGGGGCATAAAATCGGTAAGCGTCGGAGGCTGGTGCTGCACCAGCCTTTCTTTTTGCATTTTGCTTAGCTGTTTGACGCGATATTCCCATTTCAGCGCGGTGGAACGATCGCCCGCCACGCAGTGATACGCCAGCGTCAGCGGTCCTTTGCCGCGCAACGCGCGCGCTCCTTTCCCGGCCTGATGCTGCGCCAGCCGCCGCGTCACGTCGGTGGTGATGCCGGTATAAAGCAGCCCGCTGTCGGTGCGCAGCAGGTACAGAAACCATGTGGTCTCACTGTTTTTCACGTCATTTCCTTTTCGTGGGTCCGCGCTTATCTTACGGTGATATCTCGATAAAGGCTGCCTGTGCTGCCGTATTCGTCGGTGGCCGATGGTGGAAAAATTTGAGGCTTTTATTTATCAATAAGTTAGCGCTATTTAACAACATAAAAAAGTTGGTGGAATTTTCCAGGCTTTAAAAGTCATTAAAAAACAAGTATATAGTTTTAGA # Right flank : TGCATTATCAGGCTTCATATAATTCGATACAGTGCTTACCTTCTTTGGTGTTACAATATTCACACAAATGATGATTTATGTGCGTTTAATTTCTTTTTGGTGTGAATAAAATCACATAACAGAGTGCGTTATCAGGGTTAAATGCCAGGAAACGCAATAGTGTGGCTGAGAGCGGGAGTGTTGTATGAGTGATTTGACTGCGGCGGCGCAACGCGCGCTGGGACTGATGGATTTAACCACCCTGAATGATGACGATACCGATGAGAAGGTGATCGCCCTGTGTCGTCAGGCTAACAGCCCGGCGGGAAAAACCGCCGCCATTTGTATCTACCCGCGTTTTGTGCCGCTGGCGCGCAAGGTGCTACGCGAGCAGGGCACGCCGGATGTCCGCATCGCTACCGTGACCAATTTCCCGCACGGCAACGACGACATTGACATTGCGCTGGCGGAAACCAATGCGGCTATCGCTTACGGCGCCGACGACGTGGACGTGGTGTTCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3986969-3987477 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001984.1 Dickeya sp. MK7 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3986969 28 100.0 32 ............................ ACAGCGAGAATACTGTCACCTGGCCGGATGAC 3987029 28 100.0 32 ............................ ATGTATTCAAAATGTTCCCCACATCGTGGGGA 3987089 28 100.0 32 ............................ ATCCGGGAGTACCACATAATGCCAACATGGCC 3987149 28 100.0 32 ............................ TCCCCGGAACTGCTTGAATCACCGCAATACGC 3987209 28 100.0 32 ............................ CACCCCGCAATCGGCAGCCAGAAATTCGGAAA 3987269 28 100.0 32 ............................ TTGTTAAATAAAACGCCGGGGATATATGAAAC 3987329 28 100.0 32 ............................ TTGATGTGCTCCAGATTGACGCGGGCACCGCG 3987389 28 100.0 32 ............................ TGTGGTTTGTTGCCGCCGAATCGCGTGCCGAG 3987449 28 75.0 0 ............AC.......A..TCCC | A [3987470] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACGGAAATCCCACCCATAGCAATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTATCCACTCCACTCTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCGTAATCGCCATTGGCGCTCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCACACCTTCAGCACCCCTTGTTCCTGCACCTGATCGAGATGAGACGCGGCGCCGGCGCTGCCGGCCAACCCCAGTAACAGAATGAATGAAAACCGTTTTTTCATGATAGTTCCTTGCAAGTCACGCCTGTCTGGCAAAAGCGTCACTGTAGCACGCCGCTTCCTCGCCCACCGATTTTGACCCTTTTTTTCGCCCATTTATAACTATCTGATTTTTAACGATGATAACGATCGGCTTTAAAAAAGGGTTTTCAGACAAAAATCCTCGTTTCTCTTTTAAAATCAGCCCACCAGCGATAAATTGCTACG # Right flank : CGCTGATGCCGTTGCCCCGGCATCAGCGGATTCAGGTTTATTCTGCCGCCAGTGCGCGAACCGCCCCTCTTTTCTTTTTGATGGCATAACCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGGATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGCACGTTGGTAAGCGGGTAGCCCAGACTTTTGAAGCGGGTTTGCTGTTGCGCGCGCTGCTTGGCCTGACGGAATTTCAGATGGGTGATGCTGATCATCGCCCAGTTGATCACCAGCGCCGACACCACCAGCGCCATCAGCAGTTCAAACGCCTTGCCCGGCATCAGGTAGTTGAGCAGCACGCACAGCGCCGTCGCCAGCGCAGAGACACCGAGCGACACCAGCGGAATGCCGCGGCGATTGACCGTCAGCAGCGCGCGCGGCGCGTTGCCCTGCTGCGCCAGCCCGAACAGCATACGGCTGTTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3993050-3992240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001984.1 Dickeya sp. MK7 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3993049 28 100.0 33 ............................ CAGAACATAAACAAACGCCAGTCCTAGGACTGA 3992988 28 100.0 32 ............................ CGCCCCGGCGACAAATCTTGTTGGCCTACCCC 3992928 28 100.0 32 ............................ CTGAATTCAACACGCACGATGACCAGCTCGAT 3992868 28 100.0 32 ............................ AGCTGACGGCCACGTTGCGACCGTTCCAGAAT 3992808 28 100.0 32 ............................ TACGTGCAGCACCGGACCCAGGTCAGCCAGGC 3992748 28 100.0 32 ............................ GGAGTACACCCACGCACCGAACTGGTCCAGAA 3992688 28 96.4 32 ............A............... GCATAGGATATTAGTCACATGAAAACCATCAA 3992628 28 96.4 32 ............A............... TGAAACGCAAAAAGATTTTGCTGGCGATCGAA 3992568 28 96.4 32 ............A............... CAATCCTCAACTTCGCGTTTTAACTCCCTGAT 3992508 28 96.4 32 ............A............... ACTCAGGATAAGCCATGACGCTTTGTCTTATT 3992448 28 96.4 32 ............A............... AACATCCATCGGGATGATCGCTGCAGCGAATC 3992388 28 100.0 32 ............................ TTGTTGTGCGGGCTGCGTTGTTGAGGCCGCCA 3992328 28 100.0 32 ............................ AGTCAGGAGTTACACAGAACTGTTCTGAAAGG 3992268 27 78.6 0 ....T.......AC.........-..CG | GG [3992245] ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.2 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCGGCGCTGGAGCAGACTGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCGGCGGGGGCGAAGCACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCCGAACGGTTGCGCCGCCGCGCGGTGAATAAAGGCCGGATGACGGAGGATGAAGCCATCGCCCGCATTCCCTATGCGGTAGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTCTCCAACGGACAAGCGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGATAAACCGGTCGCCGGGGCGTTCTCCAGCTACGGGTTAAGCGCCGCCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGAGCTAACGTATTGATTTTAAATACCGAAATCTGGCCGCCAGAAAAAAGGTTTTTTTCGTCAAAATAGCGTTTTTTCTTTAATAATCAGGTGATAAGCGATAATTCACTACA # Right flank : GGGTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGACTCGCTACCCCGGCATATATTCACCAGTAACTCAAACTCCCGATATTTTTCAACAGCCCCATTCCCGCACAGGAATAAAAAAATCCCCCACCCGTTATCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTGTGATGGTTTAAACCGGCGATGCAGATACGGCCGCTGGCGATAAGGTACACGCCGAACTCTTCGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 4002347-4003636 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001984.1 Dickeya sp. MK7 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4002347 28 92.9 32 ...........GA............... GCTGAAAAATGCCTGAATGGGTTGCCAGTATT 4002407 28 92.9 32 ...........GA............... GATCAAATCAGCCAGGCCACCGCCCGCTATAA 4002467 28 92.9 32 ...........GA............... GAAACCTACAAAAAAGGGCGGATGCCAATAAC 4002527 28 100.0 32 ............................ AACATGACGCTGGCGACATCTGAACGCTGGAA 4002587 28 100.0 32 ............................ TACAACCCGCAGGCCGGCAGCAATGAAACGTT 4002647 28 100.0 32 ............................ GCAAGAATCGCGCCTTTTTCCAGACGCATGAA 4002707 28 100.0 32 ............................ AGCTTGTCGAGGTGGAAATGCGCGGGCGTATT 4002767 28 100.0 32 ............................ CGGTGCCACCGCTGGAAGACCTGACGTTATAC 4002827 28 100.0 32 ............................ TGGCGGCGCAACTCTTCTTCACGCGCAATTTG 4002887 28 100.0 32 ............................ TGTTGCGGGAAATAATCTCGTCAGCGCGGGCG 4002947 28 100.0 32 ............................ CAGTTCTACAGCAACAGGCGACATCCCGTCAT 4003007 28 100.0 32 ............................ GCCGTATATCCCGCAAACGCCAACGGCCAGCT 4003067 28 100.0 32 ............................ TCAGGCAGTGGCATGTAACTAATGACCCTGAA 4003127 28 100.0 32 ............................ GCCGCGCTCAAGCCCTTTATCCGCTATTGCTG 4003187 28 100.0 32 ............................ AGAAACCGCGCTCGTTGTCGATGCGAGCGATA 4003247 28 100.0 32 ............................ AATGACGTAGTTGTGCGTGCAGAGGATAGTAC 4003307 28 100.0 32 ............................ GTCAGGCGCAGGCGGGCAGCAAAGGGCTATCC 4003367 28 100.0 33 ............................ CCTACACTTAATCAACGCCTGCAGGATGCCTGC 4003428 28 100.0 32 ............................ TGACTACAAAACCGTAGAAATGACGGTTGAAA 4003488 28 100.0 32 ............................ AGCACAGCCGCATCGATTGCGCCGTTCCACGA 4003548 28 92.9 32 ...........GA............... CGAAAGGGGAATAAGTCCGCGGCTTCACTGAG 4003608 27 82.1 0 ....................A..G.CG- | GG [4003629] Deletion [4003635] ========== ====== ====== ====== ============================ ================================= ================== 22 28 97.9 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTCACCGAGGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACAGACTCTCTGACGCAGTGATAGACAAACACCACCCGCGTAATAAAACGCAGGCTAATAATGAATTAGAAAACACGTAATCTACTGGAAAGTAACGAAAATCAGCCTAGCACAGCCCAAACGGGAAAGTGAATGACGCCAGAAACACTTTTCCCGCTTCGATACCCTTTTTTTCAGCCGCCTTTTTCGGCATTGAAAAATCAATAAGTTACCGAGGGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGCCAATTGTGGGCCGAGATACAAAGGGTTAGAGTCAACGAGCTACA # Right flank : GGGTTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGCGGCGTTTGAGCCTATCCTTGTCGTGCGTGCGATGAAGTGGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTTCTCTCTATCCTCATCCGGCAGTATTCCCTCCCCCACTCGGGGAGGGAAATATCACTCAGAACGACGTCCAGTCGTCATTGCTACCAGCGGTGGCGGCGGCACGTTTTTCAGTCGCAACCGGGCGAACGGAAGCGGCAGACGGCAGCGCGTGGGATAGCGCCGCTGACCGGCGGGCCGGCGACGGCGCGCCGTTGTTGCCCTGCGGCGTCAGGCGGAACGCGCTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //