Array 1 17-3647 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMSS01000263.1 Vibrio metoecus strain OYP5D09 Vm_OYP5D09_Contig_263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 ............................ AATCGCTAATTGAGGGAAAGAGAAACCCACGT 77 28 100.0 32 ............................ TGTAGCCTGAATAGACAAAAAAAGGTTTTTTT 137 28 100.0 32 ............................ TGCAAGCGTGGAGCCAAGTCTTGATGATGTTT 197 28 100.0 32 ............................ TGGTATCGCCCAGAACATCACCGTGACCAGTC 257 28 100.0 32 ............................ TCGACGTGCGCGGCTGAGATAGTCTTGCGGCT 317 28 100.0 32 ............................ ATAAAGGTGGTTCTACAAGGCCAGATTAATGA 377 28 100.0 32 ............................ GACACTTCGCCCGCCGTAAGTGACGGTTTTAC 437 28 100.0 33 ............................ GATTTTTTGATTTAATTACGAAGTCTTCTTCTT 498 28 100.0 32 ............................ AAACACCGCCAACGAAAAGTGATAATCACCAA 558 28 100.0 32 ............................ TTGACTCGTATCACGTCTACTATCCCGAAGCT 618 28 100.0 32 ............................ TCACTAACTGGGAGTTAATGCAGTTGGTGGAG 678 28 100.0 32 ............................ ATCAACCGCATACACCGAATTCTTGCCAATCC 738 28 100.0 32 ............................ TGACGCTCTCGGTACAAGTGCTTACAACGCAA 798 28 100.0 32 ............................ ATTTTTGAATCACTGAAAGATGAGTGCAGTAA 858 28 100.0 32 ............................ TCACGCAATTCTGTGAACTGAAAGGAATTAGC 918 28 100.0 32 ............................ TTCAAGCTCGTTCTGTGTTTTTGTCAAATCAC 978 28 100.0 33 ............................ CAGCGCCAGTGCCTCACTGCCTGACTGCAAGCG 1039 28 100.0 32 ............................ CTGCGCCAATCACGCCTATTGCTGCGCTTAAT 1099 28 100.0 32 ............................ GCCAATTGACACGCCAAGCGATGCCACCATAG 1159 28 100.0 32 ............................ CGACTAGAAACTGCACCACTTCACTAACCATT 1219 28 100.0 32 ............................ ACATTACGACCCCATGCATCCCAGTTAATCAC 1279 28 100.0 32 ............................ ACTAAGCCAAACGGACAGCTGGATACTTAGCG 1339 28 100.0 33 ............................ ATAATCAACTCACTGTTGCGACTATCTCAACCA 1400 28 100.0 32 ............................ CGGTTCATTGATCACTTGGTGGAGAATGACAG 1460 28 100.0 32 ............................ TGTTGGCGGTGGCGGTGGTGGTTCCGGTGGCG 1520 28 100.0 32 ............................ AACAAAAGAAAGTAGATGTTCGCCGCCTTTGC 1580 28 100.0 32 ............................ TATACCCAGTTTGGCCGCCGTTCTTTTCTGCA 1640 28 100.0 32 ............................ AAGACGAGAACACAACCAAAGCAAACGTGATC 1700 28 100.0 32 ............................ TTACAGGTTTGCGTACAACGCCGCCACGCCTG 1760 28 100.0 32 ............................ CATCAGCAGTCGCATAAATCGCATAATCAACT 1820 28 100.0 32 ............................ ACTTTAGGCTCTGGCAGTTCGTTTTTAAAATC 1880 28 100.0 32 ............................ ACGCTGCACGCTCAATGCCTTTGCCGCCATTG 1940 28 100.0 32 ............................ GAACAAAGTAGCCGGTGTGTATGACTTTCCTG 2000 28 100.0 32 ............................ TAGATCAGAAATCTGGTGACGTAACTGGTCGC 2060 28 100.0 32 ............................ ACTAAAAGCGTTGATGCAAATAATAAAGTTGC 2120 28 100.0 32 ............................ CGTTGAACCCGAACCCATAAAGGCATCTAAAA 2180 28 100.0 32 ............................ TTTCCATTCAAGCACTTCTTCTTATGCAACGA 2240 28 100.0 32 ............................ TATTGTTCGTGACATTGAGCGCAAAAAGAAAA 2300 28 100.0 32 ............................ TATCGGCTCTCGGGTGATGCGCCGCAATTATG 2360 28 100.0 32 ............................ ATCAACCGTCACGCTCTTAGCAAGCTTTCCAG 2420 28 100.0 32 ............................ CTATCAGTTTCAAGTGGGGGAGAGGTTAGAGT 2480 28 100.0 32 ............................ GTGTATGAAATGAGCCGCCGCATGGGCGCGCA 2540 28 100.0 32 ............................ GTATGTAAAAGTCACTGCTTATATGAAATCGG 2600 28 96.4 32 ...................A........ TTTTAAACAGGGTTTAAACGTGGCGGTGAATG 2660 28 100.0 32 ............................ AACTTGGGAGGGTGATCAACAAGCGCAGTTTG 2720 28 100.0 32 ............................ TAAAACAGTGGCTCAGGAAGATGGCGAACCAG 2780 28 100.0 32 ............................ ATGAAAAGGATAACGGCAAAGAAAATGAGAGC 2840 28 100.0 32 ............................ GATACATGACACTTTAAATATTTTATTTACTG 2900 28 100.0 32 ............................ ATCCGTAGAATGCGCAACCTAGAAGTTAGAAA 2960 28 100.0 32 ............................ AACTGAATCAATAAATTTCATTTTAGTCTTCC 3020 28 100.0 32 ............................ ACTTTCACGCCTCTCTGATTTAAGCTTTTGAA 3080 28 100.0 32 ............................ TGAGAGTATGGATAGTGATTACATTCCAGCGA 3140 28 100.0 32 ............................ GCGAGGATTTTGCTTAATTTTTGCAATTTCTT 3200 28 100.0 32 ............................ GTTCGGTTTTCGAGACGTCTTTCGCCGTGTTC 3260 28 100.0 32 ............................ AAGCGAGAACACGAAGACAAAGACCGCGCACC 3320 28 100.0 32 ............................ ACGTATCCCCGCTTCAGCAAAAAGCGCCCCGA 3380 28 100.0 32 ............................ GTTGAGTTCAGTCTTCAACATGGTAACTCTAA 3440 28 100.0 32 ............................ TTAATAATATTCTGACTAAGTGACTGACCTGA 3500 28 96.4 32 ...........C................ GAGAAAGTGTTTGATAATCTCGGTTTGCTCAT 3560 28 100.0 32 ............................ GCGCTAGGCATATCGAAATCAGACGTCAAAAC 3620 28 89.3 0 .............T...........TT. | ========== ====== ====== ====== ============================ ================================= ================== 61 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTAAACATGTGCATG # Right flank : AGAAAGTGAACCAAACGATGCAGTTCACTTTCAACATTTTAATGAGGTTCCTACTTTATATTGTGCATATTCATTATGACCTGCCTAATGGTGCTTTCGATATCAGGAGTCACCTCTTTTCGAGGTGTTGCGAGTTTTTTCAAGAGTTCTGCCTGGCGGTAGTCGGAAACATCACCATAGCTGTAAAAAGTAGTCAGTACGCCTTCATGACCTAAGTTTTGGCTCCAAGCTTTAAACTCTTCCGCGTTGCTACATAATTGCTCCCCTAAACGAGCTAGTGTGTTGCGAAAGCTATGTGGGTTGTAATAAGGCAATCCTGCTAGTTTGAAACTTTGCTTGAAGATTCTTCTGATTGGGTTTGCTGTTGTCCAATGCTCTTTTGTTAATCCCATGGCTTCAAACTGAAAGTTGGGGCTGTTCTTCACTTTCGTTTTTGGGAAAAGGGGAGCTTCTGGGCCGAATGAAAGCTCATTTGTTAGATAACTCACCCATTCGGTAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18872-15843 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMSS01000105.1 Vibrio metoecus strain OYP5D09 Vm_OYP5D09_Contig_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18871 28 100.0 32 ............................ ATTTAGCGGCGTATCGAATACAACAAACCGCC 18811 28 100.0 32 ............................ ACCCGCGAATGATTGACGGAATAAGAGGAACA 18751 28 100.0 32 ............................ TAACCGATTACGATATTGTCGTACCGCCTAAC 18691 28 100.0 32 ............................ GTGATCAGCAGGCCACGAACTTGCTCGAAGAA 18631 28 100.0 32 ............................ GTTTGATGTCGGAGGCCATTGTTGCGGCGGGT 18571 28 100.0 32 ............................ TAATACGCATCAAGCTATTGTAATTATGAACG 18511 28 100.0 32 ............................ ACCCACCACCGCCTTGCGGCGGCGGACTGCTG 18451 28 100.0 32 ............................ ACGCTGTCTAAATCAGCGATAACTGGCTTTTC 18391 28 100.0 32 ............................ AGAGACAACTTTTCTAACTTTGAGCAACTGTC 18331 28 100.0 32 ............................ AGCAAGTTCTTCGATATGGGGTTTGATGCTGC 18271 28 100.0 32 ............................ GTAACATAAACTCGTTGTTACAGCGTTGTAGC 18211 28 100.0 32 ............................ TAATGTTTCAACGCATCGTTGCATTACTAATG 18151 28 100.0 32 ............................ TCTGCGTGTACGTGATTACCTGCGTCAGATGG 18091 28 100.0 32 ............................ ACGCCAGACATTCTCAAAGTAAAGCCATTTGC 18031 28 100.0 32 ............................ GTTCTGGCGCGTCGATTGAGTTGTTATACGAG 17971 28 100.0 32 ............................ GCAAGAAAGTGAACCGCCTTCAGATAAAATGA 17911 28 100.0 32 ............................ TTGATACTCGTAATCATAAAAAGATGCCGTTC 17851 28 100.0 32 ............................ CCAAACATCGGGCGCGGTACAGCGAGCGTCAC 17791 28 100.0 32 ............................ AAACACCAGTCGAGCCCGTTCCCGACCCTGAT 17731 28 100.0 32 ............................ GCAAATGAGCGCGCACAAGCTCATGGAGCTTG 17671 28 100.0 32 ............................ TACGCTATGGGCTTGATAAGAACTTGGCGATG 17611 28 100.0 32 ............................ TGCCTTGAATCGACCAAACTCATCACGACCAG 17551 28 100.0 32 ............................ CACTCAGTTGCGTGCAGAGCACATCGAGTACG 17491 28 100.0 32 ............................ AGCCGTCCCAAGCTGAGTATCCGCATCCGCAC 17431 28 100.0 32 ............................ TACGCAACCTGCCTAGACGACTGTTTAACCCC 17371 28 100.0 32 ............................ TAAGAAATCCAGCTCCAACGAACGAGTTGCCG 17311 28 100.0 32 ............................ TTTTACAAGGAGTTTAGGGTCATAGTCAGATA 17251 28 100.0 32 ............................ AGAATCTTTTGCGCTTGGGCTGGCGTACCACT 17191 28 100.0 32 ............................ ACTGGCTGACCTGGATCTAACGTATCGAGCAC 17131 28 100.0 32 ............................ TGCATGGTCTTTTCATTCACTCTTAGCGGAAT 17071 28 100.0 32 ............................ TCGATGTATAGTTGAGAACCGATTCCAGCATT 17011 28 100.0 32 ............................ TGTAATTAACGGCGTATGGCTGATTCTGGTTT 16951 28 100.0 32 ............................ GTAGAGGTTAGATGCACCAGACGATGGCACTT 16891 28 100.0 32 ............................ AAAATGATGGCAGGTGGCTGGGCAGTTACCAC 16831 28 100.0 33 ............................ ATTTTCGCCTGCGCGACTAAACAGCTTTGATGA 16770 28 100.0 32 ............................ TGATCTAACGAGGTTTCAATGTCGATTAAACC 16710 28 100.0 32 ............................ ATAGTTTGACGTGATAGGCGTTTCATCCTTCT 16650 28 100.0 32 ............................ AACACGGTTATGTTTTTCATATCTAGCCTTGG 16590 28 100.0 32 ............................ AGAAAAACGCACTTGCGAAACTCTTTTAAAAA 16530 28 100.0 32 ............................ TTGCAATAAATGCGCGATCAAATGACTGGCGA 16470 28 100.0 32 ............................ ATTTGCGGCACCGACACCGGAGTACGTTATAT 16410 28 100.0 31 ............................ ACATACCCATATTTTGTATTTGCACCTACTA 16351 28 100.0 32 ............................ GTGGAAGGTTTTTTTAGATTAAAATGGAAGTC 16291 28 96.4 32 A........................... AGCATCGCTTTTGCGTTACCGTTGTTCGCTTG 16231 28 100.0 32 ............................ TGTTTGCGGTCAAACTCTAGCGCTTGGTTTGA 16171 28 100.0 32 ............................ TCATCGCTATCATCAAAAAGCATCCATAGCGT 16111 28 100.0 32 ............................ CTATTCGAGAAAGGCATCTATACCAATCGCAA 16051 28 100.0 32 ............................ GCATCCTGAATGCCTTCATGCACCGCTTGATC 15991 28 100.0 32 ............................ TGTAAAAATCGTTTCTCACCTCATCTTGAATT 15931 28 100.0 32 ............................ AAAAGTTTGGCCTTAGACGTTAGTTCTTCAAT 15871 28 92.9 0 ......................G.A... | T [15851] ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTAGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACGGACTGTTGTAACTTATTTTTATAGATTTATTCTATA # Right flank : TCTTTATATATCTTATGGTTGGGGTTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTTTCACCAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGCAACTACGATGTGACGTTAGGGGATACCGCTAAAGCGGTCGGTAGTGGCGCTCTGCGCTCTCTGGCTGGGCTTGGCGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCGGATGCTCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCGCTAAGCTCCCGTCTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //