Array 1 9223-7141 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMZ01000009.1 Listeria monocytogenes strain NRRL B-33188 PROKKA_contig000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9222 36 100.0 30 .................................... TGATGTCATTGAGAGTATTCTTGAAGAATT 9156 36 100.0 30 .................................... TATTCTTTGTTCGCTCGTGAGTATTGGGAT 9090 36 100.0 30 .................................... TCATCCATATTACTCTCTCCCCCACATGTT 9024 36 100.0 30 .................................... TTTGATGAATTTATTGTAATATTGCAATGT 8958 36 100.0 30 .................................... TATTCAGTGCTTTAGCTTGTTTAAGTTGCC 8892 36 100.0 30 .................................... TAGATGCTGTTCATATTGAAGTATTACCTG 8826 36 100.0 30 .................................... ATTTCAACAAACGTTCTATAACCGTCAATA 8760 36 100.0 30 .................................... TGGCAAAAATTAAGAAAGCACAAGTAAGAG 8694 36 100.0 30 .................................... CTTTGAAATCGGTAACTTCACATAATAAAG 8628 36 100.0 30 .................................... TCGAAATTAGAAAGAATGACCGCGATTTCC 8562 36 100.0 30 .................................... TTACTAAGCTTCTTTTTTTACCATACGCTG 8496 36 100.0 30 .................................... GAAGCCATGCTTACGGTTGCTATTGCCTTC 8430 36 100.0 30 .................................... CAATTTACTACCCACCCCTTCCGATTTTCT 8364 36 100.0 30 .................................... TTAATCCTAACGCTTCGGAAAATCGGCACC 8298 36 100.0 30 .................................... TTTTTTTCGTTTTTGTATTTTGTGATATGA 8232 36 100.0 30 .................................... AAAGTAAAAACAAACTCAACACAAGACAGG 8166 36 100.0 30 .................................... ACGTCTTTACGTACGATAGTGACCTGTTCA 8100 36 100.0 30 .................................... TGAAACAAAGCTACTTGATAAAATTATTCC 8034 36 100.0 30 .................................... ATCCAATTATTTCGGAAAACCTTGCTCCAG 7968 36 100.0 30 .................................... CGTCATGTTCTAACTTCAAGTGCGCTTTCG 7902 36 100.0 30 .................................... CGTCATGTTCTAACTTCAAGTGCGCTTTCG 7836 36 100.0 30 .................................... GAACGTGGATTATGGAGTTAGCTGAGATGT 7770 36 100.0 30 .................................... TTACCGAAAATGAATTGGTTGCACCTGCTC 7704 36 100.0 30 .................................... CGTCTCAGGCGAATTCATCGACTCCATTCA 7638 36 100.0 30 .................................... AGAAATTTGTATAAAATATTGTCCAATGTG 7572 36 100.0 30 .................................... ACGGCGCTCGCAGACAACTTACAGTCACCG 7506 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 7440 36 100.0 30 .................................... ACCTAAGCGGCCGTGTCTAGTTGACGTGTC 7374 36 100.0 30 .................................... GGATGATAAATAATGGCATTAACAGAGGCA 7308 36 100.0 30 .................................... AGTTGGTAAAAAACAAGTTAGTGCGATACT 7242 36 100.0 30 .................................... CTTGATTTTTTGCAATAGACAAAACGAATG 7176 36 94.4 0 .........T................T......... | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATGGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCCAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GGGCTGGTTATTTTAGGCGGGGGAGCGCTTGTTTTAGAGCTATGTTATTTTGAACACCAACACACAAAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGATCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTATTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1171441-1171088 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMZ01000008.1 Listeria monocytogenes strain NRRL B-33188 PROKKA_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1171440 29 96.6 36 ..............T.............. CTTGGTAAAGGTTATAACATTGAAACACTTGACTCA 1171375 29 100.0 36 ............................. AGATTTTAGCAAAGTCAAAGAGCGTTTTATTGTTCG 1171310 29 100.0 35 ............................. ATCAATGACTCTACAGGGGGAAAGGCGTTCAAAGG 1171246 29 96.6 36 ..............T.............. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 1171181 29 100.0 37 ............................. AATCGTCACGATGGGAAAGTCATTGATAGCACGCCAC 1171115 28 75.9 0 A.....A.......TCA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 94.9 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCAGGAAACGCAACCGAACGCTTACAAAATTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCTCTTCATATACAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCGAGTTTGGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //