Array 1 2255-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPSX01000020.1 Pseudoalteromonas phenolica strain S3898 S3898_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2254 32 96.9 34 .........A...................... AAAGTCTTTCAATGCATTGTTTATTTTGCCAGTG 2188 32 100.0 34 ................................ ATACGTATTAATGCGCTGTCTTGCCGTTAACGTA 2122 32 100.0 34 ................................ TGAGATAGGAGTAGTTAAATAATGGCCGAGCAAA 2056 32 100.0 33 ................................ TGGCACTTCATCAATAGAACGGTTCGCACCTAC 1991 32 100.0 33 ................................ AATGACACAGCAAAGCTGAATAATGCCATGGCT 1926 32 100.0 33 ................................ AACACACCTTCAGGCAGTGTAACTTTTCCATCA 1861 32 100.0 34 ................................ TACCCCTGCTAAGTAATCATTACCTTGCCTATCA 1795 32 100.0 34 ................................ TAAGTAAAGTTAATTTTTGGCTCGGTAGTGAAAA 1729 32 100.0 35 ................................ CAGTTATCAAGTTAACATTTGCACCAGATTGCGAC 1662 32 100.0 34 ................................ AAGTGCGCCGCTGTCAGGTCTAAGCTGTACGTCA 1596 32 100.0 33 ................................ TGGTACCTCGCCCGCGCTTTGGTAAATATCGCG 1531 32 100.0 33 ................................ AGAACAGCGATTGCTGCACCAAATTTACCTGCG 1466 32 100.0 34 ................................ CACCAATTGCAGCCACCAAAGAGAGTGATGAGCA 1400 32 100.0 33 ................................ ACGCGAATAAAACGCCACCTGGTACTTACTTGT 1335 32 100.0 35 ................................ CAACTAAACTTTTTCATGATTGAATGTGTCATGCG 1268 32 100.0 33 ................................ TAGAACTCTCTGAACATTCAAAGGTGCGCTCTT 1203 32 100.0 33 ................................ CAGATGCCAATGTTGATCCAGTCTTATCTGCAC 1138 32 100.0 33 ................................ AGAACAAGCTTATTACAACCCTGATATACATGA 1073 32 100.0 34 ................................ CAGTAAAAACCGCTGAAAACACCACCGTTGCAGA 1007 32 100.0 34 ................................ TTTGCCAGATAAAAATAGGACTGGACTCACTTTA 941 32 100.0 33 ................................ CCTGCAGCTCGCAATCACCGAAAACCTATCACC 876 32 100.0 34 ................................ TTGTCAAAAACGCTTTACCTGCTGTTGCGGCCAT 810 32 100.0 34 ................................ TTTGAAAAATTCCGGGTAACGTTCATTTCTAAAG 744 32 100.0 33 ................................ TATGATAGCGCGTCAAACCCAAACGGCATTGCC 679 32 100.0 35 ................................ TAGTGGTGGTGTAGGTAGAGCTGGTGTATTTTTGG 612 32 100.0 35 ................................ TTGATAATTAATGACTGGCGCATAGTTGCTCATCC 545 32 100.0 33 ................................ TGGTTCTTCACCGAGTTGAGCAACTTTGTGTTT 480 32 100.0 33 ................................ AAGTGGGGGGGCTTCTACATCATTGAAATCAAA 415 32 100.0 36 ................................ TGCTATCAGTGTATAGCTTCTGTTTCCTGAATCAGT 347 32 100.0 34 ................................ CAATTAAGCTTTTTGATTATATTTTTGGATTAAA 281 32 100.0 33 ................................ AAGAGTTAGGTTATCGCGCAGTTAAAGGCTTTA 216 32 100.0 34 ................................ CAGTTTAAGAACGCGGTTTGCAGGAACACCTTTA 150 32 100.0 33 ................................ AACATCACCCTCTTCTGGGTTTAAAGCTATATC 85 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 99.9 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : TTTGTGATAAAGAAATAAGGAATATGAATCATGATGGTATTGGTTACTTACGATGTCTCGTTTACCAGCGAAGATGGGCAAAAGCGACTCCGACAACTAGCAAAAGTATGTTTAGATTATGGTGTTCGCGTACAATACTCTGTATTTGAGTGTGAAATAGATGCAACGCAATGGCTTATTTTTAAAGATAAGCTTTTATCTATTTATGACCCTGAAGTAGACAGTCTTCGTTTTTATAAACTCGGCAAAAATTGGCATAACAAAGTTGAACACCATGGGGCGAAAGTCGCCTTAGACATATTCCGAGATACCCTTATTTTATAATCGCTAGGCTACAGTTCTCGGTAAAATACTGGGGATCTAGCGATGTTTTAAGTTCTTTAAAAATTTAGAAAAGTTTATTTTAGCTAAAAGTAACACAGACCATTATTGTTCTTTTGTTTGTTGATAGCGGAAAACAATGAATTGTGTTAGCTTACTTGCGCCTTTGAAAAAAGGCA # Right flank : CAACAGATTCATTTTGACTTGATATTTCAATTCCGGTCGCGCCTCCCGCAGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 1-626 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPSX01000138.1 Pseudoalteromonas phenolica strain S3898 S3898_contig_138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1 32 100.0 34 ................................ TAGAGCTTAGAGCAAACAGAGTAGCAACCCATAA 67 32 100.0 34 ................................ TGAGGTACTAGCTTGATTTCATCAGATTTTTTCT 133 32 100.0 34 ................................ CTGATACGGTGTTGGCAGATCCACGCCAAGTGAC 199 32 100.0 34 ................................ TACAGAAGGCTATATGTAGCTTACTTAATTGATA 265 32 100.0 34 ................................ CTGAAGTTTATTTCTCAGAAGATAGCCCAAAGGT 331 32 100.0 35 ................................ AAAGAAGATGAAGCATATAAAGACCTTATTTTTAG 398 32 96.9 33 .............T.................. AGGACCAGCAACGGCAAAATCATGCTGTTCAGC 463 32 96.9 34 ..........A..................... TCTTAAGTCTTTTGGTTTTTGGGCTCACTTTAAA 529 32 93.8 34 ..........AT.................... CAGTGTGTATATAAATATTCAAGTGCCATGCTAA 595 32 90.6 0 ..........A........T...A........ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 97.8 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : | # Right flank : CCTTGCTTATGCTACTTGTGCATAGCTGTGTTTAAAGGTAGTGACTCTCACAGAGTAGAAACCGGCTTGTTAACCGAGTGCCATGAATAGTTGTCGCCGTATACTGCGCTCCACAACTCACTGTCTATTAATAAAAAACGCCCTGAACAGCTCAGGGCGACTTTGACTTAAGCTTATTCTTCATAACCATTAGCAAAGGTTCTTACTAACACTTCTATTTCAGTAAATGTTTGTTCGCTATTTTCGTTAAACGCATCAGCATTGCTCAATAAAACAAAGCCGTTTTTACGTTTTAGGTCGGCAAATATTTTGTTGCGTACGCCAAAGTCGGTGCCGCCATGAGAAATAAACTGCTGGTCGATATTCCAAAAATAACCGTGGTGGATTACGGTTTGTGCAGGCTCATATTGTATCGACAGCATGTTTTTAACGGCGTTTTGGTCAAGTACTTGTTCATCACCGATTTTTCCTTCATGGATACTGGCAAGCAAAAACCGACT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //