Array 1 236598-236429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSO010000002.1 Bartonella sp. W8151 NODE_2_length_584754_cov_169.903823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 236597 36 100.0 30 .................................... GGGTGCCCAAACGTACCCGTTTATTGGTTT 236531 36 100.0 31 .................................... ATGAGAATGCATTGCTCATGCCGACAAAGTG 236464 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 100.0 31 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTGTTTTGCATGTCACGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTGATGCGATGGTTCGTTGCCTCGCCCGGTGTGACAAATTCTAGATTGTCAGGACGGATGGAAGTATCAAGTAGATTAGTCTGATAATTCTGCCGTGGTTCAGGATTGATGGGGTGCTCGGTGCGCCGTCTTATCACGTGCCCAAGCTTTCCTATTGCAGCGAAGCAGCACAGTATAAAGCCAACCAGAAGCCATATGCTCACTATTACATCCATTTTGTTCCTCCCCCTGCAATGCTACACCGTTTAAACATTTACACACAATAGC # Right flank : CGATATCCACTTAACCCTTTGTTTTATAAGGATTAAGTGGATATTTTTTCAAAAAAAATGCCGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGTGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 237728-237361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSO010000002.1 Bartonella sp. W8151 NODE_2_length_584754_cov_169.903823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 237727 36 100.0 30 .................................... AGTGACGTGCAACAAGTTGATTATGTCACT 237661 36 100.0 30 .................................... CTTTAAAAGTTCCAACTTTAAGCATAGAAA 237595 36 100.0 30 .................................... GGCGGTCAAGATCGGCGCGCGGCCAATCGG 237529 36 100.0 31 .................................... AAAAACGGCGGAAGAAGCACAGGCAGTCTTT 237462 36 97.2 30 ..............C..................... TTGGCTATCCGGTTGACGACGAAGAGGCAA 237396 36 91.7 0 ...............................G.C.G | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 98.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTTCCTAAAAATCTGACTATATTTTCACTTAAGTGAACAATCAATTTGCTTATCTGTAAGGTAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGTATTTTTAATCCGCAAACGTGAGCATCCTATCAAAGCGTCATCGGATATTTATTCGTCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATATTTCCACATTCAATTATTATGGCAGTAAACATTGGCTAAGCGACCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCAGAAATTTTGAGAAGGCGGAAAAAGAAAAAATTGACGACACCGTTGGGTCGGAAACCCCCGACACCAAAAAGGTGGCGCTCCGGATGGCTCTGCGTCCTAGGAAAATATACTGGAATTGGCAAATAAAATCAACAAACAGCATCATGAGGGAAGTAAAGATTGAGTATAACAAGATTTGGCTACCGTTCT # Right flank : CACAATCCAAAATCATCCTGTCAGGCAACCACTAGCCGCGCATTGACAACACGTCAGATGGTATTTAGCGACGCGTGTTTTTCGTGCCTTTGGAAATCCGAGCCCCAAAAAATGAAAACGTTGGCCATACTTCGCCAAACAACAACACGCAGCGATTTTGGAAAGTAAAAAGGGCACGACTATTTGTAAAGGCATTCGCGTCAAGTCGGAGTTTGTCCAACCCGCAGGCTGTGAAGCGAACACATGAAGAGAGTAAGTTCAGTATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTGTTTTGCATGTCACGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 241425-241257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSO010000002.1 Bartonella sp. W8151 NODE_2_length_584754_cov_169.903823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 241424 36 97.2 30 C................................... CTCACGAATAGACCGGAGTTCGTCGCCTTG 241358 36 97.2 30 ...................................C CTGTCATTAATGATGGACGCGGACGTATAT 241292 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 98.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAT # Left flank : ATTGATATTTTTTTAAAATTGAATAGTGTCTTCCAATAAAATTGAATTCAATTGGTTAAAGAGTAATCTGAAATGACTAAACGAGCAAAACTTATTTCCGGTATCTTTGCTATCGCAATCATTTTTTCTATCGTCCTGCTTTTTATCGCTTATTTATCCGGAGTCCGTGTTTTTGTTGTGCAGCCTATAGGCGCCGTTCCGGAGGGGAGAACATTAATTGTAAGTGGCGTAAGTAAATTACATGCTATCGACAGCCCCGATGCCGTTTGTGAACGTATTGGCACCGTCAATTTACTTTGCAGAGCAGGCGTTATAGCTGGAGTGGTCGATAAAGGCGAGATATTGTTGCGTCTGCCGTATAGTCAGTTTTTATATAATCTTTCGGGCGCTCCCGAAACCGAAAGGTAGATGATCATTATGAAAATCACGCTTAATTTGCGTCTTGTTATTTTTTCTGTTTCGATACCAACTGAACAGCTCTCGCTTGGCTCGTCCACTCA # Right flank : CGATACCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGTCATCCACGTTTTCTCTAAAAATCTAACAAGATTTTCTCATAAGTGCACGATCAATTTGTTGACCTGCAAGTTGCAAAAAGTATAGATATTTCATCGTTCGGGCAAGGTTGTTACGATCTTCCTAAAACAGGATAAGCCGGCATGTTCGGGCTTTTTTTTAGAAAGACCTCAAGCAATTTTGTGAACCGCTGTTTCCATTTTTTAGGAAAGCTTTCCGTTGTTAAAATGCTGGTGAATGCGTCGTGCTACTTAACAAGAAGTCCGCTTTGATAAAGCAGACTTTAAGATAGCGTGATAAACCGTAAGACAGCGAGTTAAACCGGTTTGGCACATCCGGTTTGCTTTTTTCAATTCGAGCGTGGCTAAAGCCGAACACGCCTGCCCCACTCG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 4 242908-242607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSO010000002.1 Bartonella sp. W8151 NODE_2_length_584754_cov_169.903823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 242907 36 94.4 30 A..................................T CTGCCGCGTCATGGGGCTCAAACGTGCACC 242841 36 100.0 31 .................................... ATACTGACTGGACAACTCGATGCTACCAAGT 242774 36 100.0 30 .................................... GCGATTATGAACCAGCTCCTATGCCGGTCT 242708 36 100.0 30 .................................... AAAGAAATTCATTTAAGGAAATAAGATTTT 242642 36 86.1 0 ..............A.....C.......AA..T... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 96.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTTCCTGGAAATCTAACAAGATTTTCACATAAGCACACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGTATTTTTAATCCGCAAACGTAAGCATCCTATCAAAGCGTCGTCGGAAATTTATTCATCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATATTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGCAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCACTCCGGATGGCTCGGTGTCCAAGGAAAATATAATGGGATTGAAAAGTATAATCAACGAACAACCTAATTATGGAAGTAAAGATTGAGTATAACGAAATTTGCCAGCGTTCT # Right flank : TTAAGCGTCATAGTAATATTGGCTTTAAATCGGGGTAGAAATGAAAAAGCTTATAACATCTTTTTTAACAATTTCTCTTCTAACGACATATTCCGTTGTCATTACCGGTTGCGGAAAGTCAGAAAAACAAAAGCAAGAAGATGCTGCAAAAGCATTTTTATCAGTTCAACCACGCCACGATCCAAGCACGAGCTTCTAAAAATGTTACTATTTCGTTTGCTTGATCCATTATTCTTAATCTTGAACATGTTCGCGGTTTTTATGTGGGGATTATATTTGCTTAATCCGTTTTTCGCATTTGTTCCATTTCATGTTTATACAGCGCCCGTTTCTCTTACTTTTTGGTTAGTTGTCTATGCTTTGGGAAAAAGATACTTACAGCGGCGGAAATTTTTAAAGTAAAACCAGTTGACATAATTAAGTTAATAACTGTGTGCGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACTCAGGCGGTTTTCACCTGTGACAGCTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 5 244093-243527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSO010000002.1 Bartonella sp. W8151 NODE_2_length_584754_cov_169.903823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 244092 36 86.1 30 ..C..AA.........G.......C........... GTCCGCTCATGATGGCAATGATCAACGGCT 244026 36 100.0 31 .................................... TTAAAATACATATTTCATAATCTTTGGTGAC 243959 36 100.0 30 .................................... CGAAGCTGAAAACGCAGAGAAAGCGGCGGT 243893 36 97.2 30 .........................A.......... AGTTCGCTGCATGACCGACGAACTTCTTTT 243827 36 100.0 30 .................................... ATATATGAAACAATATACGGCGTTTAACGT 243761 36 100.0 31 .................................... TTTATAGACGATATGTGCTTCCCCGCTTTTG 243694 36 100.0 30 .................................... TTACCAAGCAATGTATTTTAGTTAGATCAT 243628 36 100.0 30 .................................... GTTTTTACGCGGCTTGAGATTGGGCGAGAT 243562 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 98.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTCTCTAAAAATCTAACAATATTTTCTCATAAGTGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGTAATTTCATCGTTCGGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTTCTCAATCACCGAACACGAAATTTTGGAAAACGAATTTTAAAAAGTCAAAATAGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAATTTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAATTCAACAAACAGTATCAAGAAGTAAGTAAAGATAGATTATGACGAAGTTTTACCGGCGTTCC # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGCCTTTCACGTTTTTCCTGGAAATCTAACAAGATTTTCACATAAGCACACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGTATTTTTAATCCGCAAACGTAAGCATCCTATCAAAGCGTCGTCGGAAATTTATTCATCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATATTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGCAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 6 245341-244712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSO010000002.1 Bartonella sp. W8151 NODE_2_length_584754_cov_169.903823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 245340 36 83.3 30 ACA.TC........A..................... GAGCGGCAGCTTTCTTTTATGAAAACGAAT 245274 36 100.0 30 .................................... CAGAGACAAAAAACAACCGTGATGAGCTTT 245208 36 100.0 29 .................................... TTAATAAAATTTAAGCTTGTCTCATTTGT 245143 36 100.0 30 .................................... CGACACAAAAGAAGCGTTAAAAGCCCGTGT 245077 36 100.0 29 .................................... CCATAAGTTCCATTAAATTCGACATCTCT 245012 36 100.0 31 .................................... TTGTGTTGCCTGTTGCAACAAAGCGAAATTC 244945 36 100.0 30 .................................... TGTCGATGCAGGCCCTTTTGTGATTTTTGA 244879 36 100.0 30 .................................... CATGATTTTCACAATTGAATCAGCAAATCA 244813 36 100.0 30 .................................... CGGCCAACGTTTCGCCGAAAGTGACGGCAT 244747 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.3 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGCGCCAAGGAAGTTTATGCCCGTTTCGGCTTCCGCAAAGTATTGATGGCGGGTTCCCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACACCCTATTTGTTGATGATTATCGTGCTTTTGTTCGGCGGCTTTTTGCGCTCTCTTTTCTTCTCCGGTGTCAATGCCCTTGCCTTTTCCGATATTGCCAAAGAAGACATTAGTCAGGCAACGCCGATTGCCGCCGTTGCCCAACAGGCTTCAATGGCACTCGGCATTGCAATTGCCGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGAAGATTTTCATACGGGCTTTTTCGTCGTCGGCTTTATCTCGGCACTTGCTTTCTTCATCTTCCGGACATTGCCACGTGATGCAGGCCATGCTTTGAACGAAAAAAGCATACAAAATACGGCACAACACTGATTAAACCAAAACATATTCT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTAAAAAAAATGCCGTTTTTCATTAAAATAACACTGGTAAATTTCGATTTTTTTGACGTGTCTTTCACGTTTTCTCTAAAAATCTAACAATATTTTCTCATAAGTGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGTAATTTCATCGTTCGGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTTCTCAATCACCGAACACGAAATTTTGGAAAACGAATTTTAAAAAGTCAAAATAGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAATTTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //