Array 1 7592-7805 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000001.1 Spongiactinospora rosea strain LHW63015 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7592 30 100.0 31 .............................. GCCTCCACCAGGTCCACCACGGTGGCCACCC 7653 30 100.0 31 .............................. ACCACCACTGGGGTAGGTTCAGCCACCCCCA 7714 30 93.3 31 .........................C...G TCTCCATGGCCACCGCTACCCGCGTCGCTGC 7775 30 80.0 0 .......T.............GC..G.T.T | G [7797] ========== ====== ====== ====== ============================== =============================== ================== 4 30 93.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CGAGGTGGACTGGTGACAATCGTCGTCCTCACTCGCTGCCCCTCTGGCCTGCGTGGGTTCCTGACCCGCTGGTTGATGGAGATTTCTCCAGGAGTCTTCATCGGCGGTCCGTCGGCCCGGATCCGAGAAGCGCTGTGGGCGGAGGTCCGGCAGTACGCCGACACCGGCCGGGCCTTGCTCGCCTACACCACCAACAACGAGCAGGGTTTCACCTTCGAGACCCACGACCACAAGTGGCAGCCCATCGACCACGAGGGCCTCATCCTGATCCGCCGCCCGAAGGAAACCCCGGCGGTCGCGTCAGTGCCGCCGCCTCCCAGCGGCTGGAGCAACGCTTCCAAACGGCGCCGGTATCGGCAACGCTGAGCGGCGCTGATGTTCGAGTGGCGCGGTGTGGATCATAAGCGGAGAGGCCGCATACACCTATGGGCGAATTGTCCGAATCAATGAAAGTGCTCGAAAACCGCGCTCGGGCCGTACAAACCCGCAGGTCGTCGAGT # Right flank : TGTGACTGGTACTCGGCGCCTCTGCGGCCGGTGACATTCGTGTGTTCTTCGTGTCTGCGAGGGGAACTCCAGTAGGGCGGCGGCGTGGCAGCAGGCGCGGTAGCGACAGCTAAGTGATCGCGAAAGGGGCCGACAGCGGGTGGTGCTCGGGCAGTTCAATATCCCTTGATCGCCGCTCAGGCCGTCGGCGAATGGTTAGGGCTGAACAAGGTCATCTTCGGTCGTCTCCATCTGCTCAAGATCAACTCTTAGTGTTGCCGGAGGGTTGCCAGAGGCGGGTCGTAGACCGGTGGCGAGATAGCGGAACTTCTCGCCTGGAGCGATCTGATGGCCAACGAACTGATGGACGGCGGCGGTGGTGGATCCTCGCCGTTGGACCTGGCGGAGCACCTGTTTCGGCTGGTGGCAGCCGGTGGCGGCAGTCTTGCCGTTGATGGTGCCGCGCTCAGCCCCGAACTGCCACAGCGGCAGGTACCACTCAAGGAATTGCGCCATCTGCT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44785-43666 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000036.1 Spongiactinospora rosea strain LHW63015 scaffold36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================== ================== 44784 29 96.6 32 ............................G GCGGGGGCGGCGGGGTGCTGCTGGGTGTCGGC 44723 29 96.6 32 ............................T CTGAGTGCAATACTCCCTCGCCTCGTAGGCGA 44662 29 96.6 32 ............................T CGGCCGGCTGTCGGCCCGGCCCCGGGCGGATA 44601 29 100.0 32 ............................. ACCACCCCGGCCGCGGCGGCCGACGTGATCAC 44540 29 96.6 32 ............................G CCCTGGTATGGGCCGTCGCCGTCGCGCTTGCC 44479 29 100.0 32 ............................. CCCCTCGGCCCTTCGGGCCTAATAACGATTCC 44418 29 96.6 32 ............................G GCCGGCACGGCGGGCGGCACGATCAGGGGGCT 44357 29 96.6 32 ............................T CTCCGGAGTTCCACGAGTTCATCGAGTTCGTG 44296 29 100.0 32 ............................. CCCTGATCACATGATGGACGGGCAGGTGAGTC 44235 29 100.0 32 ............................. GTCTCGTTCATGACCATGACCGGGACCTCGGG 44174 29 96.6 32 .....................G....... GTCCCCGCTTCGCCGATCCGCTTGTCGAAGCT 44113 29 100.0 32 ............................. CTGTCCTACGGTCTGTGCATGGCTCAACTCAC 44052 29 93.1 32 .......................A....T GGGTAGGAGTCCGATGCTGCCCGATCATCACG 43991 29 100.0 32 ............................. CTCTGTGTCCAGGCCGCGCTCGGTGACAGCAA 43930 29 96.6 146 ..........................T.. CCCGACATCGTCAACGACATCGCGGCCAGCGCGGTGCTCCCCGCATGCGGGGAGCCCAGCGACGACACCGCTGTGATGGTCGCCCTCCCTATGCTCCCCGTGCGGGGTGGTCCCCGGTCGGCGGGGATTTCGGGCACGAAGCGTTC 43755 29 75.9 32 A.....T.....T.T......G...G..T TGGTCACCAAGCTGCAACCACTCTGGGCCGGC 43694 29 72.4 0 .....TG.....G.T.T....G...G..G | ========== ====== ====== ====== ============================= ================================================================================================================================================== ================== 17 29 95.0 39 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CCAGCGGTCAGCCCACTCCGCCACGCCTGACACCGCCCCGCTCCGCGCCCCCTCGAACCTCGCTTCGCTCGGCCCGTGCTTTCCCGGTGCCGCGCTACGGCGCGTCGCCTCATTGCGCGCTACCGCGTGCAGGAGGACGGGCCTCGCCCAAGGCCGCACTCCCGTGCGCAATTGACCTTACTGACGCTCGGCCTGCTTTTCCTAAGGCCGGTCTCCCGGCGCCACCGCCATCAGCACACCGACACCCACCTCAACCCACCACAGCCACCACCCATGACCACGCCCTCCAGCCACCTATCCCATACGGTCTTGATGAGCATGAATCTTCACGACACCGGGCAAGCCGCTCAGCCTGTAGGCCCTCGCGAGATATCGTTCCTGCGTATCCCACAACCAGAGAGAAGATCGTCCTCGTCGAGTCACGATCGGTCCGGTGAGCGGCCGTTTTCGAACTAAAGGAAATCGCCACCTACGCCGGGAAGACCCGCAGGTCAGCAAGT # Right flank : ATGGCTTTGGGCGTGCAGCCGGCGCGGATGTTGGGGGTGGGGGAGTGCCGCCAGGTGGGGTGTGGTGCTTCGTTTGGGCGCCTTTGGCGGGGGTTAGGGGGGTTAGGGGGGTGGGGGCATGGGGGCGGTGGTCGGGGGGCCGGGGGAGCGGCCGGGTGGGGGGTATTCGCAGTCGAGTTGGCTGACGTCGATGTCGCGGCCGGAGCCCCAGCCCTGCCCCTCGGTGGAGGTGTAGACGAAGGTGCACGCGCGGCCGTGGCTGTCGGTGATGTTGGAGACGAAGATCTGTTCGTCGATGGCGCATCCGGTGAGGAGCAGGACTCCCGCGGCCACGGTGGCGGCTTTCCAGAGCTTCATGTGATCACCCCCTTCAGCGGATGGTAAAGCCCACTGCCGGCGGTGATCCAGCGACCCTGTCGGGAAATGTTGGTGAATGGGTGGGGTCAGGTGCGCCAGATGAGGACCAGGGCGCAGTCGTCGCGTTTGCCCGCGAGGGTCTT # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.64, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27766-27536 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000037.1 Spongiactinospora rosea strain LHW63015 scaffold37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 27765 31 100.0 36 ............................... CGATGCAGCACATGGACAGTCTCCACCCGATCACTG 27698 31 100.0 37 ............................... GCCGACTCTCGCGCTGACCCCCGGCCGTGAGTCGGCT 27630 31 100.0 33 ............................... GCGCACCTCACGCCGCGGCGATGGCCGAGCTGG 27566 30 87.1 0 ...................G.A..G-..... | G [27539] ========== ====== ====== ====== =============================== ===================================== ================== 4 31 96.8 36 GGTCACCGATCATCCCTGGAGGGATCGCAAC # Left flank : CGACCCATGAACCTGCTCCCAGGCCATCACCGACTCACTCGCGGCCACATCAACCCGAAAACGCAACCGCCCCTCCCCAACATCGGCCAATAAGACTGGATCAGTCCTACCAGGCGCCCCCGACAATTTCCGGGTATCGCCAAGCCCGGCCCAAAGCGAGTCATGGACAATGGGGCGCGGGGGGCGATCAGGTTACTATCGCACAATTGGGGCGAATTGGCACTTATGTGTCGGGTAGGCGGCGAGTCGGGCGACGGAAGTGGCCCGCCCCGATCAACGATCGGAAGTCTGTGGATGGAGCCGACCGATACGCCGACCTCGAGGCATGTTCGCCTTAGACGGCGAGCCTTTAAGATCCCAGGTACGGGTCACTGATACCGATGCCGGGACCGTACTTTGATCAACGCTCTGACCAGCGCAGATGCACTACCGCCGGATCGCTGCAAAAACACGCTCGACGCGGGCCTGCTTCGCCATTCTGACCTGCGGCGTTATCCTCG # Right flank : CAATTGCACACCCATTAACTGTTACCCGCCGCCTCCTACTGGGATTCAGGTGATGCCGATATCTCCCAGCTTTTCGGCCGCGCGCCGCATCCAGTGAGGTGATCTCAACGATTTAGAAGCGGACAACGAGCGATCCAGCGGAAGAAAGGTGCGGCCCGGATAGGCGCCGGACATATCACCAAACCCATAGAGAGGCGTGGAGCCCTCGGTAGAAGAAGGAATCACCACAAAACCGTCTTCACCCGGAAGGCTCCACGTGATTCACCATCGTGCCACGCTCGACGTCTCCCGTGAACTCGCTCAGCACACCGGGCGGCTGCTACACAGTTTGAATTCGTAGGGTCGGTCATGTCTTTGTCGAGGTATCGAGGGTGAGTCCGGTCTGGACCAGGCAGCCGGTGAGCAGATGGGGCCGGTACTGGATCTTCTTCAGCTTGCGTTTGACGATCCGGACGAGTCCAGGCAGGTCGGCGACGGCGAAGTGGGCCAGGGCCCCGGCG # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCACCGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 37306-36296 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000037.1 Spongiactinospora rosea strain LHW63015 scaffold37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 37305 30 100.0 36 .............................. ACAGCAGCACGCTGGACATGGTGGCCAGGTCGGAGG 37239 30 100.0 34 .............................. CTGCCCCACAGGTCGCCCATCGACCCGCCGCCGC 37175 30 100.0 37 .............................. CGCTGACCCTGCTGCCGCCCGGCTGCCCGCGAGCGGA 37108 30 100.0 34 .............................. CAGGGGCTGACCTGGCTACGCAGCACCGGGCGGC 37044 30 100.0 33 .............................. CCGCTGCCGCGCGCAGCCGGTAGGCCACCTCCA 36981 30 100.0 35 .............................. GAGCGCGATGTACGCCTGCTCGGCGTCGGCTTCAG 36916 30 100.0 37 .............................. CCCTCGCCGCCGACCGGGAGCGGTCCCGCCAGAGGCG 36849 30 100.0 38 .............................. GACCTGTTCCACGACGCCATTCCAGACGAGTTCATCGT 36781 30 100.0 34 .............................. CGTCGTCGGGCTGCTGCTCCGCCAGCCGATCCGC 36717 30 100.0 36 .............................. GTGGGCACAGGCTTTGGATGATGCCCGGGCAGCGAT 36651 30 100.0 35 .............................. GTGCCGCCAGGGGGAAACCCTGGGTCTGACATGGC 36586 30 100.0 36 .............................. CCGCCCGGGGTTCGTGTGGACGGGATCTTGCCGCGC 36520 30 100.0 36 .............................. CTCCTGGGCCCGCACGCCCATCCGCTCCGAGCGCAC 36454 30 100.0 35 .............................. GTACCGACGCCGGTACCCGGCAGGACCTCGCCGCC 36389 30 100.0 34 .............................. CCGTTCTCCTGACCTCTCATGATCTTGTTCACAC 36325 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 100.0 35 GTTGCGATCCCTCCAGGGATGATCGGGAAC # Left flank : CTGTCACCTGCCCCGCCGGTCACACTGTCCCCCTGGCCGCACCCGGCGGCCGCTACCAGCAACGCCGCGCCACCTTCACCGGCTTATGCACCGCATGCCCGCTGCGCGAACGCTGCACCACCGCCAAGACCGGCCGCGTGGTGACCATTCGCCCGCATCACGATCTGCAGACCGCCGCCCGTCATCAGGCCGCCACCGACCCTGCCTGGCAAGACGACTACCGACGCTGGCGGCCCATGGTCGAACGCGCCGTGGCCTGGCTGGTCGCCCGAGGCAACCGCCGCCTGCGTTACCGCGGCACCGCTGCCAACGACCGCTGGCTCCACCACCGCGCCGCCGCCCTCAACCTCCGCCGCCTCATCAACCTCGGACTCACCCACACCAGCGGCACCTGGACCCTCGCCCCGATCACCCCATAGCACGAGGGTGAGCCAGCTCACGCCCGACTCACCCATCAAGATCTTCAGGACATTCCTAGGGACAGCTCCGCTTCCGCTGCC # Right flank : CCGAGGATAACGCCGCAGGTCACCGCCGCAGTAGAAGGACTTGGAACGGCGGATTTTGCAGCGGTTCGGCGGTAGTGCAGATACGCAGGTCACAAGGGGTGTGGTCACAGAATGGGGTCGGTGTTGCCGAGGGGTTGGCCGATGAGGTCGGTTTGGATGTGGTGAGGGCCTTGGGTGCGGTAGATCAGAACGCTGTCGTAGGTCGGGTCGATGTGCTGCTTGATCGCCGACAGTAGCTTGCGGTGCTGCGCGGCGGAAAGCTCCCCTTGGAAGACGCTGCGTTGTACCCAGTGCAGGTACTGGCGGCAGGTTCTGAGAATGCCCGGGTTGCGTTCGGCGAGGGTGTCATAGACGACGATGACGAACACGGTCACCACCAGGGGCGGAACGGCTTGTACGGGGTGTCCTCCAGGCACAGCCGCACGACTTTGAGGGCTTCCAGGTGGATCAGCTCCTCGTAGGACACTTTGCGGCGCAGGCTGCGATGGTGGACCGTGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCCAGGGATGATCGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 41425-41786 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000037.1 Spongiactinospora rosea strain LHW63015 scaffold37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 41425 30 100.0 36 .............................. ACGACGTGGCTACCGTCGTCTCCGAGCTGGTGACGA 41491 30 100.0 40 .............................. AAGGCCCGGCCGACCTGCTGGAAGGCGAGGGAGTGGGCGG 41561 30 100.0 34 .............................. GCCCTACCAACCGCGGGTCCCGCCGCGGTTGCTG 41625 30 100.0 37 .............................. GCTGGGTCCCACCGGAGTGGGAGCTGACCGAGCGCGG 41692 30 100.0 35 .............................. CCAGGAGGTCACCCGGGACGTGCAGGCCCGGGTGT 41757 30 83.3 0 ...........C......G.....TC..T. | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 97.2 37 GTTCCCGATCATCCCTGGAGGGATCGCAAC # Left flank : CGATCTACCAGGGTCCGCCCGGCGCTGGTCGCGTACGCCAAGAACACCCCCAACTGGCAGTTCTCGATTCGGCCGGCAGTGCCGGAGTATTGGCGCTGGACCCCGGCGGACTTGTCGCCCTTCTTGATGAACCCGGTCTCATCCACGATCAGCACGCCATCACCCGCGCCCAGGTGCTCGACCGCGTAAGCCCGCAGGTCATCGCGTACCGCATCAGCGTCCCACCGGGCCGCGTTCAACAACCGCTGCATTCCCAGTGGATTGCTCTCACCCGCAGCCTCGGCCAGCGTCCATCCGTTCTTGCCCTCGATCGGCGCCAGCAGCCCCCGCACATACGCCCGCGCCCGCCGCCGTGGCTCCGGCCGCCCGAACCGGCTCGCCACCCGGGCGAACAGGTCATCCAACCCCGCCACCCACGTCGCGACATCATGATCCATCACAAGAGCGACACATTACACACCAGAGATCACAAAGTGATGCTGGAGTACTAATGGCACGAG # Right flank : CATGCAACGGGCGCTGGAAACGAGATGGCGATCTTTGTTATATCGATTTCTCATTCTAGTTCCCCCGCAAGCCCGGCCCTCTTTATCCACCGCCCCCATCGGGGGCTGCGAGAAAAGTTCTCAGCGATTTCCTTCCCCGTTGGCAGGGCCCCATCAGAGCGGCGATTCGCCGTAGCCCAATGCCACGCCATCCGCTGAAGATCACCGGCAAGGCGCCCACTCACGTGGGATGGACCGGCGCTCTGCCGCGGCTCATCGTCCGCGCTTGGAGAAACGCTGCACATACCGTCCACGGCATCTTCATCCACAGAATGCCCGTCATCCACCACATACGTGGACAGGCGGCGAATCTGGGCCATCAAGAGCTCATAGCTCCCAATCAGTGCTGCGCTCGGCCAAGCGGCGATGATCCGGCCGACCACGGTGGGCTCCGCAACAGCGACGTTGGCGCCAAGACTGGCCAGGCTGCCAGTGACCAGCATCGCCCAGGCAAGCGCCCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 10632-10481 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000055.1 Spongiactinospora rosea strain LHW63015 scaffold55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10631 29 100.0 32 ............................. GTGGATCGCAGCCCACATGATGTCCAGGCGAG 10570 29 100.0 32 ............................. GTCTCGTCGATTCCGGCATCGTCGCATCGATC 10509 29 93.1 0 .............C..............C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 ATGCTCCCCGCACGCGCGGGGGTGGTCCG # Left flank : ACGCTCGGCCTTTTCCCAAGCCAGGCTTGCCCGGCCTGCACTTGGCCGATTTGAGCGTTCCCACAACACCGCCCAGCGAGACATCATCCCGCCTCCTGGGCTCCCCCCTCTGCCCCGACAGACAAGCGCACCCAGCACGCGCTAACGCGCACAATCGCCCTCGCTGACGCTCGGCCTGTTTTCCCAAGGCCGGGCTCCGCCCGGCGCTATCGCCACCAGCACACCCACCTCAACCCAGCACACCCACCGACCACGACCAAGCCATATAAGCACCCACCCTCACACGGCTTTGATGACCACGAACCTTCACCGAATCCGGCAAGCCACCCGCCCGTGCGCCCTCGCGAGATATCGTTCCTGTGTTTCCAGTCGCATCCCTCCAGCCGAGGACAAGATCATCCTCGCCGAACCGCGACAGTCGGAGGCCAGTCAGTGGTTTGATCGTTTTCCAACTAAATGAAACCGCCGTCAGCGCCAGGAAATCCCGCAGGTCAGCAAGT # Right flank : ACGACCCACGGATTAGGAGTTTTAGGATGCGGTATGCAGTCGAATGCGCGTGATCGCGTATGAGTGCAAAACGCCTTGTTGGCTAGTGCATGCGAGTACACGTGAGCGCACGGTGTGCCCTGTCAGCTCAACTGTCATTCGGCCACAACGCCGTCCCGATCTTGTCGGCCGCCTCGCGCTTGAGCCGCGGACGGACATGCTGATACGTCGCCTGGGTGAACGCCGGCGTGACGTGGCCTAGGAGCTCCTGCACAACCACAACGTCCACCCCCTCCTCAAGCAGCGGTCGTGCTTCGCCTGCCGCTCCGGTCGGTGAGCAGCCTGACCCGGGCTAGGGGGTTGGACTTACCGAGGTGGGAGGCGGCGGTGGCGAGGGCGGGTTTGGCGGTGACTCACCGCCCTTGTTAGCAAGCGCAACCAGTACCACCACCGCCCCGATGACCAACAGTGCACTGCCGCCAGCGAGCGTGGTCCGCCCTCGCTTAGTGTGAGGTGAGACC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCACGCGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6412-5956 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000060.1 Spongiactinospora rosea strain LHW63015 scaffold60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6411 29 96.6 32 .........A................... ATTTCTCGCATGTCATTCCTCACACGCGAAAC 6350 29 100.0 32 ............................. ATCAGCACGTCGCCCTTGGAGCCGAGAAGCTC 6289 29 96.6 32 ............................A TGCCGGGAATTGCACTGTCGGCCGATCCCTTC 6228 29 96.6 32 ............................T GAGCGCTGCCACCGCCCGCGCCGACCTGGAGA 6167 29 100.0 32 ............................. GGCGTGCCATGCGCCAACGACCCATAACCCTC 6106 29 96.6 32 ............................G GAGAAACGGCACATACGGCGGGAGGTCAATCG 6045 29 96.6 32 ............................G GAGTGCGTCCCCGAGCTGATCGACGGCCAGTA 5984 29 86.2 0 .................A...A...G..G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.2 32 GTGCTCCCCGCACGCGCGGGGGTGGTCCC # Left flank : CGTTGGGAATCGGCTCGCACTGGCCCTTTGACCAGTGGGGACGCTTCCTGCCCGAGCACACCACCGCGGTCAGTCTGCTGGACCGGCTCCTGCACCACAGCATCGTGGTGGTCACCGAAGGTGAGTCCTTCCGGATGAAACAGGCACGAACCAGGACACCAGCACGCTTGATCAAGAAGTAGTCAACTACGAAGAGGTGGGGACTTCTACATGGCCACCAGCGGCGACACGCACTTGGCCGTTGACAAGACCCGCAGGTCAGCAAG # Right flank : AGAGACGCGCTCGCCCTGGCGCCACTGCATCAGTGCTCCCGCACCTTGCTGACGCTCAGCCTGTTTTCCTAAAGGCCGGGCTCCGCCCGGCGCTGCCGTCACCAGCACACCGACACCCACCCCACCGGCTGGCAACCGAACCACCGCCCCCGGCCGCCACCCCCGCCTCCGGCGGACAGCACGCTTCGCGCGCAGGGACCGGGATCCGCCCGAAAGGCGATAACCCCGAGAACGCCATATGCGCAAGCTCATCAACATCGATCACAACCCAGCGTGCCGCTGCGGTGCCTTCCATCACCACCGAATATGAGACAGAGCCGTTAACCAGACAGACCCTGCGCGGCGGCATCCTGGCGATGGCAACGTGGATGCTCAGCACCGCCTCACCGCGCCCATGGGTATGACCGTTCGGCCATCGTCTTGTGGCGAAGGTCGGTGAATCGATCCGGGTGTCTGGATGCGGGGGTGGGCCCGTGTCATGGTTCGTGTGGCGGCCAGTC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 189689-189419 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000014.1 Spongiactinospora rosea strain LHW63015 scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189688 29 96.6 32 ............................A GCTGGTGGCCGTCGAGGTAGGCGATGAACGCC 189627 29 100.0 32 ............................. CAGGGGGCCGCCAGCAACTTCACGGTCCTGGC 189566 29 89.7 29 .......................GG...T CATCCAGGCCGGGGAAGCGCGGGAACGCA 189508 29 69.0 32 .AG....A.A.A..........A.A.T.T GTCTCTTGCTGGGGCTTGATGACTTGGCGCAG 189447 29 69.0 0 .......T........A..AC.CCAC.T. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 84.9 32 GTCGGCCCCGCGCACGCGGGGGTACTCCC # Left flank : CGACCTCCTCGGCGGCCCTCAAGAGGAGCGGGCGATACCCGTCCTCACCCACCTCCTTGAGGAAATCCGACATGCCGCTGACGGATACGCGGCCAAGGAGGTGCTGACCGGCTTCGGCAGCGACGTTCTTCCCAGCCACACCAGGCAGGAACTGACCCGGATCGTTCACTCCTCCGGGCTGCACCAAGCAGGCGTCCCAAGCCATCTGAAAGCGGAATTACTCCACGCCGCGAATACCGGCGAGCAGGCTCTCCGCCGGATCCTCAAACTCACCCCCGGCGGGCGAGCAGGATAGGGATATATGGCCATCCCGCCCGTGGAACGCCCGTAAGATCAGCTGTCTCAGCCTCCGGCGGCCAGCATGGTGGCCGCCGAACTGATTGACCACGGCACGCCAAGGGAGGCCACAGATGCTGCCCACGCTGCCGCCGACCAGCCTGCCGACAAAGCAACTGAATGAAATCGCCACCTCCGCCCGATAACATCGCAGGTCAACAAGT # Right flank : GGGAGCCGTGCTGGCTGGACAGCAGGGATGGACATCGACGCGACAACGATCAAGCCATCCACCGCAAGCGGGATGAGCACCGCCGCCAACTGGCCTTCATCTTGCCGCATGCACAACTCATGCACGTACCGAAAGGACGCCACAACCGCGACCACTACCGAGAGACCGCCGCCGGCAATCGTCATCCATCGAATACGCCGCACACCAGTCACTAGACGTCACCACCGCTCCCGCTCTTCACCGTGCTCCGCAGGGAACGGGTCCGGCGGCGCGGGAGAGGCCGGATCGCCTCTAGCGTCAGCCGCCGAGAACGAACTTCTCGGTCAGAAGGGAATGCCTTCGGATTCCCTAGCTCTGGGTCCCTGGCCGGGGGCACACACTTGACCAGCCATTAGCCCTCTGAACTGGGGCTTTACGTATCCCCTTCTGGCGATCATGTGCAGGCGAGTGCCATCGAATGCAGCCGCAGGTCCATGATCCGGGGACATACGCGGGATGAT # Questionable array : NO Score: 3.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.25, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGGTACTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 201761-200207 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000014.1 Spongiactinospora rosea strain LHW63015 scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201760 29 100.0 32 ............................. TCGTTTCACCACTGCGCCGAGCACGGTCCGCC 201699 29 100.0 32 ............................. GGCACCAGGGCCTCACGCTGCCGGGCGGGCCA 201638 29 96.6 32 ............................G GGCCCCGGAGGGAAAGAGGTCCAGCGGTCCAC 201577 29 100.0 32 ............................. ACCTGCTGCTGGGTGACCTTGATGCCGCGCGG 201516 29 96.6 32 ............................G ACCACATCCTCGCGCTGGCTGGAGCATGTGAA 201455 29 100.0 32 ............................. TCGTTTCACCACTGCGCCGAGCACGGTCCGCC 201394 29 100.0 32 ............................. GGCACCAGGGCCTCACGCTGCCGGGCGGGCCA 201333 29 96.6 32 ............................G GGCCCCGGAGGGAAAGAGGTCCAGCGGTCCAC 201272 29 100.0 32 ............................. ACCTGCTGCTGGGTGACCTTGATGCCGCGCGG 201211 29 96.6 32 ............................G ACCACATCCTCGCGCTGGCTGGAGCATGTGAA 201150 29 100.0 32 ............................. CCGAAGCTGGCCGAACGGTCCCACGGTGTCGA 201089 29 100.0 32 ............................. TTCTCGCACAGGCCAGAGCAGAGGAGGCACAC 201028 29 100.0 32 ............................. TCTGCCGCTCGTAGCGGCGGTGTTGCTGGAGT 200967 29 100.0 32 ............................. CTCAAGGTCGGCAGCCGCGGCCGACTCGTCCA 200906 29 100.0 32 ............................. CGGACGTACCCGGTCGTGGACCGCTGGGCGAT 200845 29 93.1 32 ..................A.........G GGATCTCCCGCTGTGAGTGAGCCACAGGTGTT 200784 29 100.0 32 ............................. TCCGGTGGGAGGATGCACTCGATCTGATCGCC 200723 29 96.6 32 ............................T CGCGGGGTTCCTTGTCGGGCTGGTCTACCCGT 200662 29 96.6 32 ............................A CGGCATCCATGGACTTGCCTCTCTGTGAGGTG 200601 29 100.0 32 ............................. CCTGCCGAGCCTGCGCAGCCGACCGACTCGCA 200540 29 96.6 32 ............................G CTGGAGCTGATCCGCAAGCTGCTCGCGCTCGC 200479 29 100.0 32 ............................. CGTACTGATGGTGCGTCCCTCCGAGTGATGCG 200418 29 100.0 32 ............................. GCGCCCGCCCCCGTGGGACCGGATGCTACGAG 200357 29 100.0 32 ............................. CAGGTGTCGCGAGTGATCGCCACTGCTCAGCT 200296 29 96.6 32 ........................C.... GAGATCAAGGCGTGTGCCCCGGGTACCGGCGG 200235 29 93.1 0 ........................C...T | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.4 32 GTCGGCCCCGCGCGTGCGGGGGTGTTCCC # Left flank : ACCACCGCTGGCCCCTCACCATCGCCACCGTCAAAGCACTCCTGCAACTCGGCGCCCTGCACGAGCACACCGGAGACAACGAACGCGCTTTGGAAGCCTACGATCAGGCCTGCACCCTGGACCCTGACACCGAAACCGCCGCCCGATCCGCCATCCGCCTACTCCACCCCCTCGGCCGCACCGACGAAGCCCGCCTCCGCGCCCGCCAGCTCAAAACCCGCCTCGACACCCTCGGCGTCGCGCCTGCGCCTGAGACTCAGACCCTTCTAGAGGATCTAAGCACCCCTGTTTAGGGCTCTCTTCCATCTCCTCACCGTCCGGGAGCCGATCACCAATCGAATGGGCCCCGCAAGCCACCTGCATTATCGTTGAACGCGTCTAAATCGCCGGCCTTCAACCAGAGGTTACAGATGCTGCCCACGCAGCCGTCGGCCAGCCCGCTGGCGAAGCAACTGAATGAAATCGGCACTTCCGCCCGATAGCATCGCAGGTCAGCAAGT # Right flank : CGGACGACTGATGGCTCCTGACACAGTGGTCACTGTTGTGGGAAAGGCGTGCAGGCGACCCTCGACATCAAGCCCTGCCCGTGCCGATCGGTGAGGCTGGTCAGAATCCTTCTGTTGCCACCATAGGGCCGCCACGCAGGTAGTTCACCAAGGCGTCTCGGGTGGTCGGCACAAAAGGTACCGGGATCTCATCGACTGGCACCCACATCACCCGCGAGTGCTTGTGGGGTTCTGCGTTGACCGGCCGCCCCTCCCACTGATGGGCGACGAACACCACGGTCAAAAACCCGTTGGGAGCCTCGACCCCCCACGCGCCGTGGATCAGCCCGGCCACCTTCAAATGGCCGGGATCTGCCACCAAGCCGGTCTCCTCTCGCAGCTCACGGGCGGCGGTCGCGGTGATGACCTCGCCCTTGTCGGCCTTTCCGACAGGCAGGTCCCAGTGGCCGGCGGCGAACTTGGCTTCGGACGCCCGCTGCAGGAGGAGGACGTGCCCGGCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 159608-159875 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000016.1 Spongiactinospora rosea strain LHW63015 scaffold16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159608 29 100.0 32 ............................. CGTCGGACACTTGACCGGGTTGCCGCAATAGC 159669 29 96.6 30 ............................T TTCTCGCGCTCGCCGTGGTCCTCGGGTCGC 159728 29 79.3 32 TGA.A.T.....T................ GACGGCGCGGATGGGCCACCGCGTTACCCCTC 159789 26 72.4 32 .T...T...ATG....---.......... GCGGTCGCCCTTTGGATGGGGCAGGGTGATGG 159847 29 89.7 0 .T...T......T................ | ========== ====== ====== ====== ============================= ================================ ================== 5 29 87.6 32 ACGCTCCCCGCACGCGCGGGGGTGGTCCG # Left flank : CCGCAGTGAAAATGCCACGGTCACTCTGTGCCACACCGGCACCCAGGACCTCGCCGCCCACGTCCGCCGCGCCGACATCGTGATCGCGGCGGCCGGAGTGCCGGGCCTGATCTCCGCCGACATGGTCAAGCCGGGCGCGGCCGTCCTCGACGTCGGCGTGTCCCGGGTGGACGGCAAGATCGCCGGCGATGTCGCCCTCGGCGTCGCCGAGGTGGCCGGCTTCATGGCCCCCAACCCCGGCGGCGTCGGCCCCATGACCCGCGCCATGCTCCTCACCAACGTCGTCGAAGCCGCCGAACGCCAGCCCCACTGACCCCGGCGACCGGTGGAGTGCCTGCCGTAACAGGCAGGAGCCTGCCGCCCCGGACCCACGCATCCACACAATCGGCGAGAAGATCTCCTAGCCGAGTCGCGATCATCTGGGAACGTGTCGGCGAGACATCCAATTCGAACTGAACGAAGTCGCCTTCTGCGCCGCGAAGACCTGCAGGTCAACAAGT # Right flank : GGGCGACGTCGGAAGCCGGGGCCGAGGGCGGTGGTCGGCCTGCCAGTGGCACCGATCACTTCGTGCCCGGGGCGGCGGCCTGTACCGGCAGACCGCCGTCGGCGGCCTGCGGAGCAGATCTGTTGATGTGGCCTTCGCCCCTGGCGATGTGCGGCCGCCCCGCCCGGGATATGGGCGGGGCGGATTGGCACGTTCCTGTGCGGGCCGGTCAGGAAGCCCGGCGGCCCGCGGTGGTGGGGGCGGTGCTGGTGGTGTGGTTGCCGCCTTCGGGTTGGGGGGCGGGGGCGCGCTGCGGTGGGACCACCGGGGTGGGGCGGACCAGGCCGAGGGCGACGACCTCGTTGGCCAGCCGGGTGCGCCGGTTGGTGCCCTCCGGGATGCGGAACTTCTGGTACAGCCGGAGCAGGTGCTGTTTCACCGCCGCCTCGGTGACCACGAGATCGTCGGCGATCTCGCGGGCCGTCGCGGGGGCGACGAAAGCCTCGTCCGACAGGGCCGGA # Questionable array : NO Score: 3.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGCTCCCCGCACGCGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCCTGCGCGGGGATGGTCCC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 189845-190239 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000009.1 Spongiactinospora rosea strain LHW63015 scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189845 29 100.0 32 ............................. TCGGCGGTGGCGGTGGCGGTGGTCGTGGTGGT 189906 29 100.0 32 ............................. TCGGCGGTGGCGGTGGCGGTGGTCGTGGTGGT 189967 29 100.0 32 ............................. TCGGCGGTGGCGGTGGCGGTGGTCGTGGTGGT 190028 29 96.6 32 ............................G GTGTCAGGCGGACGCGCGGGCCATGCCCTGCG 190089 29 100.0 32 ............................. TCACCCTCCAGGAGCATCCGGGGCTGCTGCGC 190150 29 89.7 31 ..................A........GC TGGACTTCGGCGCCCTTTGAGGGGCGATCTT T [190176] 190211 29 86.2 0 .C...........T............T.G | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCT # Left flank : CAGATCTCGGCTCTCTCCCGGCGGGCGTGAACTACGGCGACGACCTGGCCAGCGGCGACATCCCCTGGTAAGCCTCAACCTCGTCGGTGTGCGGGGCGTCGCATTCCTCAGAAGGTGTATCTCGCATGGCATCCATGATCGTCATATCCACCACCGCTGTCCCCGACCATGTCCGCGGGGCCCTCACTCGCTGGCTCATCGAACCGGCCCCCGGCCTGTACGTCGGCACCGTCTCAGCCCGCGTCCGCGACGAGCTCTGGTCCGCTCTCGGCGCATGCATCGCCGACGGCGCCGCCGTGTGTCTTCACCCTGCGGAAAACGAGCAAGGCTTCACCATCCGCACCGTCGGCGAACGCCGCCGCCACGTCGCCGACTTCGACGGCCTCCAACTCGTCCGGTTCCTTCCAGAAGTACCTGTCCAACCATGACCCCTAAAAAATCACCGACAAACACCGACATCACATCACCGCAGGTCGCACGAGTTTCCGCACTTCACGAAG # Right flank : GCGAATGTTCGGCCCCATCGATGTAGCCGTGCTGTCCTCCCGCGCTCGTAGGGGCTGCCAGGTGCATGGGCCACCTATTCCCGTGCAGGAACCCGGCTACAACAGGCGCATCGCCTTCTGGGCGTTGTTGGGCGCGCCGTGGGCGCGCCTGGGTGTGCGCCGGGTGTTCGCCTGGGGGCGCTGGGTTTCTTCGCCGGTGGGGGCGGTGGTGAGCTTGCTCTGCGCGATTGGACGGACTGGTCCCGTCCACCCTGTCTGCCAGGGCGGTGTGCTCTGGTGGCCCCGGGAAGATCACTGGGAGGAACGCCATGAGCAAGGACCAGGCAGACACCGTTGTCCTCGCCTCGGGCGGGCTGGACAGTACGGTTTTGGCCTATCACCTGCGGGACAAAGGCCGCCGGATTCGGATGGTCTCGTTCGACTACGGGCAGCGGCATCGGCGTGAGCTTCAGGCCGCTGCCCTGGTGGCGACCGCTCTGCGGGTGACTCACGATGTGGTG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 202058-202879 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000007.1 Spongiactinospora rosea strain LHW63015 scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202058 29 96.6 32 ............................C GGTACTTTCATCTCCACTTTCGTTCTGCATTA 202119 29 96.6 32 ............................T CATAGGTCGCAGCATAGGATGATCCAATGCCG 202180 29 96.6 32 ............................A GCGGAGCGGGTTCGGGTGGAGGCTGAGGCGCG 202241 29 100.0 32 ............................. CGGTCTATCGGATCGTCGCGCTGGAGATCGGC 202302 29 100.0 32 ............................. CCCCACCGGGTTCCCAGAGTTGGCGCTCTAGG 202363 29 100.0 32 ............................. CCCACCTCGACGACAACTCCGTCGATCCGGTG 202424 29 96.6 32 ............................A GACGGGCGGCTGGTCCTCCCCCCCTTGGACGT 202485 29 96.6 32 ............................C TGCCGATCGAGGGGGACGTCCACCCCAAGGAG 202546 29 96.6 32 ............................T GCCATCAGCGTCTGGCATCCCACATCAGGCCC 202607 29 96.6 32 ............................T TTGACCTTGAGATCGAGTGGGAGCTGTCCTTG 202668 29 100.0 32 ............................. GACCTCCAACCTGAGCCGAGCGGTAGTTTGAT 202729 29 96.6 32 ............................T CGGGTAGGCGGCAGATGTGCAGCTACACCGTG 202790 29 100.0 32 ............................. CTCGGCCACCCCATCGCCCGCCTCCCCGAAAC 202851 29 86.2 0 ...........GTA..............C | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.1 32 GTGCTCCCCGCACGCGCGGGGGTGATCCG # Left flank : GGCCATCGGCCCCACCAAAGCCCAACGATCTTACCGACCTGCGTCGCCCCGGCCCCACGGCCGGCCACCACCAAACCGCCCCAACCAGACGCTCGGCCTATGCTTCCCCGCCCCCGCACTACACACGTCGCCCCAGTACGCGCTACCACCCACACCGGCACCCCGCCCAGTACGCGCTACCGCGCGCAATCGCCCTCGCTAACGCTCGGCCTTTTTCCCAAAGCCGGGCTCCGCCCGGCGCTACCGCCACCAGCACACCCCCATACCCACCAACCACGCCCAAGCCCTCAGAACCCATCCACACGGCCTTCGGACCATGACCCAGGCAAGTCCTCAACCTGCGCTCCCCTGCGAGATATCGTTCCTGCGTTAGTGACTGCATCCTCACAGTCGTAGAGAGGGCCACCGTCGCCGAATCGCGATACCCAGCCAGCGAGGTCATCGTTTTCGAACTAAATGAAATCGCCCCCACCGCCCGGAAAACCCGCAGGTCAACAAGT # Right flank : CGCGCGGCGGATACGCCGAGGTGGCCTTGAGCAGTACGGCGGGTCGGTCATCTTCCCATCGGGAGCGAGGCATGGTCGACGATGCAAAGCGCACCATCACGGCGTCATCTGCCGGTACGGCATCCAAGTGGGCGCTATGCCAGGCTGTGCAGCACTCGCCGGGTCGGGTCGGCCGCCTTCGGGTTACGCAGCCGGTCGGTCACCAGGAAGCCGGGCAGTTCCCACCCTGCGGCGTGCTCCCGCTCGGTCAGCACGAATGTCCCGCCCTTTGCCGCAGGGTCCCAGCCCGCTGCCAGTGCGCGCGTCACGAGCGCCCGCACGTCGCGGGGAAGCGGATGGGCGACATCGGTCGTGCAGAATCCCCATGGCGACGGGCCGCTCGTGGACAGCAGGTCCGCCTGCAGGAGACAGCCGTTCTTTCCGCCACCCCACACCCGCAGGCGAAAGCCTCGGTGACAGTCAGTGGAGCCGGGGATGTGCCGGATATCGGCGGTCCAGGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 286076-285681 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEY01000007.1 Spongiactinospora rosea strain LHW63015 scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 286075 29 100.0 32 ............................. GTGCGGATGTGTTTCCGAACGCCGGAGGGATC 286014 29 100.0 32 ............................. CTCACGCCGATCCCCGCCCTGGCGACAGGCGG 285953 29 96.6 32 ............................T TGCCCGCCTTGCAGGATCAGGAACTTGATGTC 285892 29 96.6 32 ............................A GGATCATGCATTTCCGGTCCGGGTCCGCCTCC 285831 29 100.0 32 ............................. GAGGGCCGCGGCAGCGATCGCCCCGGCCCCCA 285770 29 100.0 32 ............................. GCGAGGGACCCGCGCCGGGTCGCCGTGTACTT 285709 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGCTCCCCACGCTCGTGGGGGTGAACCG # Left flank : GCGCTTCGCGCCGTTGGTGCCGTCTGCGGCGAGGTATGCGCTCCGCGCCTGGGGTCCGCCTCCGGCGGGGTGTGCGCTTCGCGCCCTGTGGTCCTCGCTGTCGCTCGGCCTGTTCTTCTCATGTCGGGCTTCGCCCGACGCTGACGCCACTGGTCCGCCCATTGACACCTGGTGACCAACAACGACAACCCCCGCAGGACGCACTGTGCCCCGCCCGCCGCACACCGGTAGAGGTGACGCGCTCCGCGCGTGAGGTCCGCCTCCGGCGGGGTGTGCGCTTCGCGCCCTGTGGTCCTCGCTGTCGCTCGGCCTGTTCTTCTCATGTCGGGCTTCGCCCGACGCTGACGCCACTGGTCCGCCCATTGACACCTGGTGACCAGCAACGACAACCCCCGTAGGACGCACTGTGCCCGCCCGCCGCACGCCGCTAGAGTGGATCACCGACAAACCCCGACATACATAACGCCGCAGGTCGCGTACGTCTTGCCTGCTCGCAAAGG # Right flank : GCAACCACCTCTCCCGTCCAGGTCGCCGTCCCAGCAAGGTGTGGCTGAGGTCTGGTGTCCTACCAGGGGCCGGGGTGATGTCTGCGAAATGTCCGGATATCGACGTAGGCTCGTCAGTGACTCTTGGTGCGATTGGTGGGGGATTGAACGCTGTGACGACGCTGCCATCGCTTCCCGCGATCCAGAAGTCGGTCCCAGGTTGGTGATCCGCAAGCGCGCCGAGCGAGCCGCGCAGCGGATCGACGTGAGCCGCCTTCCCGAGGACGTCGTGGCGCTCATCGACGCCCTTGAACCCGGCGAGGCCCTTGCCGTCACACGGGACGGCCAGGCGATCGCGACGATCTCCAGCACCGTCGCGGTCATCCAGGGCACCATCGTCGATCGCGACGCGGCCGAGGGCACCGATGCGGCCGAGGAGCGACCGCCGACCGACTACGACGGTGTGACGGTCGTCGCCACCGCGATGGAGTTGTCGGCGAAGGCCCGGACGTCGCTGTCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCTCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGATCCCCACGCGCGTGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //